Tan0011878 (gene) Snake gourd v1

Overview


Name	Tan0011878
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Glycine rich RNA binding protein
Location	LG03: 66280739 .. 66282834 (+)
RNA-Seq Expression	Tan0011878
Synteny	Tan0011878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTTGTCTGTGTAGGCCAAAACCCTAACCCCTTTGCTCTGCCTTGCAGTGTCTCCTCTTTTTCCATCGGCCGATCGAATCTGATGGCTTTCCTCTCCACTGTAAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCCTCCACTCTCCGATCGCAGTGGACTTCCATTCGTCTCAGCTCAACTCTCACAGCGCCTAAGCTCTTCATCAGTGGTACGTCTCGCAGAAAAAACAATCAGCTCGTTTCGCCTCCCCTAATTTTATTAACTTCACCCATCTGGATGATTGAAAATGGTATGAGAAATTGGTGATTAGGCTCTAATTTCTGTTTGAATGCTGAGAACTTTCTGAGATTCTTGCTCACCCTTTATCTCTTACACCCAACCGATTAGTTTCGGAGCAGTAAATGGGATCTCCTTAACCCACGATGCTCTGTTCTGTTGCATTTCCCCCCTTTATTTCTGGTTTTCCTCTTCAAGTGGATACTTATTTTCCTTTATTCACATATGAGATTGCTTCGCTCTTCAGGAAGTGGTGGGGCTTGTTTTGGCGTATGAAATTAGAAATCTAGACCGACCTTAATTGTGCCTATCATATCAATACGTAGATTTGTGAGCCTACTAACATATCTCGAGCAATTCTTGCAATGGAAAGTGCCAAGAAAACTTTGCTAATTCATTTCTTATGTGACTCGAATATGCCCTTTGCGTTTGAAGGTTTGCAATTTGGCTGACAAACCTTCTGAGTATCATGGGAGTACTAAAGTTTTTGCCCTCCCCCCACTCCATAGAAAAGCATTGATAGACCTTCTCGTTTCTGGGTTTGTATTATTGTCTCATTTCAGTGGAAACTTTTTTAGTACTATGGTAATTCGTACCTTTTCTAGTCACAATTTGCACATCACTGAGTGATATATTATTTTATTTCATGGGCCTACACTATTCTTAAACATTGCTATTATGGAAAACAATGGAGGCAGTATAGAAACGGTAGCTAGATATATTCCTTGTTTCGGTTGATGTTGAATGACCTCCATATGATGTTTTTCATCTAATATTCATCATGAATCCAGGAACATTAAAAAATAGAAATAGATAGCTTACATCAGCATAAATTTTGATTAGTTGCTGAACCATGACGACCTGTTTGATCTGTTTCGGATTGGATATGCCTGGTGAAAGTCCCATTCTTATAAAATGAACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGCCAGCTTGTAGAAGGTTTAGCTCTCTCTCTCTCTCAAATTTACAATTCTGTAAACATTTGTTGCAGAGTGCAACATATTGACATTGCCTCAACTTTTGTACAGCGAAAGTTATAACTGATAGGGCTACGGGAAGATCGAAGGGATTCGGCTTTGTAACCTACGCTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAACCAAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGCGGTTGATTGCTTGCATAATCTATGAAATCTCATATCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTTTAATGTATGTTCATCATCCATGGGTGCTATAGGTAAGTTTCATGAGACAACACCTAAGGAACTTCAAAGCCAGATAGAGGGGTAAATTTTTGTTATAGGTATGAATTTAGAAAAGAGGGGAAAGAAGTTTTTCATAAAAACTACTTACTGATCTTAGGTTTGTTCAACATACTTTAATTATTATTTCGTTTTAGTTTAGTCTTCATATTTAAATTATTCTATTTTGGTCTCTATTTTTTTTTAAAAAATCTATTTTGGTCTTTTATGTTTTTAACTTATATCTTAAATTAATGACCTTCCTTGAACAAGATCTGTTATTATAGGTAGTACAACTGTATCATTGAGTTCTAAGGAGACATGTTAAAGTAGCAATTAACTTTAATATCATCGCCTAATATGTGCAAATCAAATTATTAATCTTGGGGTGTTATTTAA

mRNA sequence

CGCTTGTCTGTGTAGGCCAAAACCCTAACCCCTTTGCTCTGCCTTGCAGTGTCTCCTCTTTTTCCATCGGCCGATCGAATCTGATGGCTTTCCTCTCCACTGTAAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCCTCCACTCTCCGATCGCAGTGGACTTCCATTCGTCTCAGCTCAACTCTCACAGCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGCCAGCTTGTAGAAGCGAAAGTTATAACTGATAGGGCTACGGGAAGATCGAAGGGATTCGGCTTTGTAACCTACGCTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAACCAAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGCGGTTGATTGCTTGCATAATCTATGAAATCTCATATCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTTTAATGTATGTTCATCATCCATGGGTGCTATAGGTAAGTTTCATGAGACAACACCTAAGGAACTTCAAAGCCAGATAGAGGGGTAAATTTTTGTTATAGGTATGAATTTAGAAAAGAGGGGAAAGAAGTTTTTCATAAAAACTACTTACTGATCTTAGGTTTGTTCAACATACTTTAATTATTATTTCGTTTTAGTTTAGTCTTCATATTTAAATTATTCTATTTTGGTCTCTATTTTTTTTTAAAAAATCTATTTTGGTCTTTTATGTTTTTAACTTATATCTTAAATTAATGACCTTCCTTGAACAAGATCTGTTATTATAGGTAGTACAACTGTATCATTGAGTTCTAAGGAGACATGTTAAAGTAGCAATTAACTTTAATATCATCGCCTAATATGTGCAAATCAAATTATTAATCTTGGGGTGTTATTTAA

Coding sequence (CDS)

ATGGCTTTCCTCTCCACTGTAAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCCTCCACTCTCCGATCGCAGTGGACTTCCATTCGTCTCAGCTCAACTCTCACAGCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGCCAGCTTGTAGAAGCGAAAGTTATAACTGATAGGGCTACGGGAAGATCGAAGGGATTCGGCTTTGTAACCTACGCTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAACCAAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGCGGTTGA

Protein sequence

MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of Tan0011878 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 7   VRRVLNGSSSSSSTLRSQWTSIRLSSTLTAP--KLFISGLSRLTTDEKLQEAFSSFGQLV 66
           +RR+   ++S  S L  Q  S   +     P   LF+SGLS+ TT E L+ AF+ FG++ 
Sbjct: 24  LRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVA 83

Query: 67  EAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQP 126
           +AKV+TDR +G SKGFGFV YAT+E++ K   GM+ KFLDGWVIF + A+PRE     QP
Sbjct: 84  DAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQP 143

Query: 127 QSETS 130
           Q+  S
Sbjct: 144 QNNMS 148

[Close]

BLAST of Tan0011878 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 36  APKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAR 95
           A KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ +EA+KA 
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 96  EGMNAKFLDGWVIFVDPAKPRE----------PRPPPQP 125
              N + L+G  IFVD AK ++           R PP P
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Tan0011878 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-16
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 8   RRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSFGQLVEAK 67
           RR + G   SS       +S   SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREP-------RP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R         R 
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

Query: 128 PPQPQSETSEF 132
            P+PQS+   F
Sbjct: 168 FPKPQSKPRTF 178

[Close]

BLAST of Tan0011878 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 33  TLTAPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of Tan0011878 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-15
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 38  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREG 97
           +LF++GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y T E    A + 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 98  MNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTNKTIG 141
           MN + ++GW+I VD AK R   R PP   S  S   +R+    G
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of Tan0011878 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 9.8e-68
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSS--SSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFS 60
           MAFLS+VRRVLNGSSSS  SS L+SQWT++RLSSTLT+PKLFISGLSRLTTDEKLQEAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTYATIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 144
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Tan0011878 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 8.3e-67
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSF 60
           MAF STVRRVLNGSSSSSS LRSQWTS RLSSTLT+PKLFISGLSRLTTDEKLQEAF+SF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQ---SETSEFGIRTNKTIGWCG 144
           PP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Tan0011878 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 137/145 (94.48%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSF 60
           MAF STVRRVLNGSSSSSS LRSQWTS RLSSTLT+PKLFISGLSRLTTDEKLQEAF+SF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQS-ETSEFGIRTNKTIGWCG 144
           PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Tan0011878 vs. NCBI nr
Match: XP_022962832.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >KAG6595304.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027314.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.5 bits (667), Expect = 4.1e-66
Identity = 136/145 (93.79%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSF 60
           MAF STVRRVLNGSSSSSS LRSQWT  RLSSTLT+PKLFISGLSRLTTDEKLQEAF+SF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQS-ETSEFGIRTNKTIGWCG 144
           PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Tan0011878 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 7.8e-65
Identity = 130/146 (89.04%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSST---LRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAF 60
           MAF STVRRVLNGSSSSSS+   LRSQW ++RLSSTLT+PKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTY+TI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 144
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Tan0011878 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.8e-68
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSS--SSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFS 60
           MAFLS+VRRVLNGSSSS  SS L+SQWT++RLSSTLT+PKLFISGLSRLTTDEKLQEAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTYATIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 144
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Tan0011878 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.0e-67
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSF 60
           MAF STVRRVLNGSSSSSS LRSQWTS RLSSTLT+PKLFISGLSRLTTDEKLQEAF+SF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQ---SETSEFGIRTNKTIGWCG 144
           PP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Tan0011878 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.0e-66
Identity = 136/145 (93.79%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSF 60
           MAF STVRRVLNGSSSSSS LRSQWT  RLSSTLT+PKLFISGLSRLTTDEKLQEAF+SF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQS-ETSEFGIRTNKTIGWCG 144
           PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Tan0011878 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.2e-64
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGS--SSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFS 60
           MAF STVRRVL+GS  SSSSS LRSQW ++RLSSTLT+PKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTY+TIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 144
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Tan0011878 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.1e-59
Identity = 119/144 (82.64%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MAFLSTVRRVL-NGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSS 60
           MAF+S +RRVL  GSS++SS L+S +TSIR ++TLT+PKLFISGLSRLTTD+KLQEAFS 
Sbjct: 1   MAFVSGIRRVLGGGSSTASSILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQEAFSP 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLV+AKVITDRATGRSKGFGFV+YATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR
Sbjct: 61  FGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120

Query: 121 PPPQPQSETSEFGIRTNKTIGWCG 144
           PPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 PPPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of Tan0011878 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-48
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MAFLSTVRRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSF 60
           MAF+S+ RR++ G   SSS L S    +R  STLT+P+LF+SGLSRLTT+EKLQ+AF+SF
Sbjct: 1   MAFVSSFRRLVAG---SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLV+A+VITDR +GRSKGFGFVTYATIE+AEKA+  MNAKFLDGWVIFVDPA+PREPR 
Sbjct: 61  GQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 120

Query: 121 PPQ--PQSETSEFGIRTNKTIGWC 143
           P Q  P   +SE G  TNKTIGWC
Sbjct: 121 PLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of Tan0011878 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-24
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 7   VRRVLNGSSSSSSTLRSQWTSIRLSSTLTAP--KLFISGLSRLTTDEKLQEAFSSFGQLV 66
           +RR+   ++S  S L  Q  S   +     P   LF+SGLS+ TT E L+ AF+ FG++ 
Sbjct: 24  LRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVA 83

Query: 67  EAKVITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQP 126
           +AKV+TDR +G SKGFGFV YAT+E++ K   GM+ KFLDGWVIF + A+PRE     QP
Sbjct: 84  DAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQP 143

Query: 127 QSETS 130
           Q+  S
Sbjct: 144 QNNMS 148

[Close]

BLAST of Tan0011878 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 36  APKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAEKAR 95
           A KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ +EA+KA 
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 96  EGMNAKFLDGWVIFVDPAKPRE----------PRPPPQP 125
              N + L+G  IFVD AK ++           R PP P
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Tan0011878 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-17
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 8   RRVLNGSSSSSSTLRSQWTSIRLSSTLTAPKLFISGLSRLTTDEKLQEAFSSFGQLVEAK 67
           RR + G   SS       +S   SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREP-------RP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R         R 
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

Query: 128 PPQPQSETSEF 132
            P+PQS+   F
Sbjct: 168 FPKPQSKPRTF 178

[Close]

BLAST of Tan0011878 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 33  TLTAPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

The following BLAST results are available for this feature:

BLAST of Tan0011878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.3e-22	48.00	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	4.8e-17	49.49	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FX45	3.1e-16	41.22	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FZ84	2.6e-15	53.09	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q6YWP9	4.5e-15	41.35	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of Tan0011878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143719.1	9.8e-68	93.79	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_022972736.1	8.3e-67	92.47	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_023517167.1	1.1e-66	94.48	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_022962832.1	4.1e-66	93.79	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >K...	[more]
XP_031739912.1	7.8e-65	89.04	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]

BLAST of Tan0011878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ59	4.8e-68	93.79	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	4.0e-67	92.47	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1HDN1	2.0e-66	93.79	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A1S3BHV3	4.2e-64	88.28	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A7N2LNA5	3.1e-59	82.64	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Tan0011878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	2.4e-48	69.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	9.3e-24	48.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	3.4e-18	49.49	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.2e-17	41.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	1.9e-16	53.09	glycine-rich RNA-binding protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 7..22 score: 25.83 coord: 57..69 score: 25.13 coord: 42..57 score: 35.83
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 4.2E-26 score: 102.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..105 e-value: 1.5E-20 score: 72.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 18.273893
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 14..138 e-value: 8.4E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..143
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..143
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..143
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011878.1	Tan0011878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding