Tan0011850 (gene) Snake gourd v1

Overview


Name	Tan0011850
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Arabinogalactan peptide 23-like
Location	LG03: 42083672 .. 42083860 (+)
RNA-Seq Expression	Tan0011850
Synteny	Tan0011850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGATCGCCGTTTCAGCCTTCGTCGTCGTTGCTGCCTCCCTGAGCATGGTTTTGGCCTCCAACGAAGCAGCAGCACCGGCACCTGGCCCGTCCAGCGGTGCTTCTGCTACCTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTTGTTGCATACTGCCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAAGATCGCCGTTTCAGCCTTCGTCGTCGTTGCTGCCTCCCTGAGCATGGTTTTGGCCTCCAACGAAGCAGCAGCACCGGCACCTGGCCCGTCCAGCGGTGCTTCTGCTACCTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTTGTTGCATACTGCCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCCGTTTCAGCCTTCGTCGTCGTTGCTGCCTCCCTGAGCATGGTTTTGGCCTCCAACGAAGCAGCAGCACCGGCACCTGGCCCGTCCAGCGGTGCTTCTGCTACCTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTTGTTGCATACTGCCTTCAGTAA

Protein sequence

MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ

Homology

[Close]

BLAST of Tan0011850 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          MEMKKIA    +  AAS++ V+A+ E  APAPGP+S ASA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGV-LFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Tan0011850 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          MEMK  A +AF+ V ASLSMVLAS+EAA+PAPGPSSG SATLPVVGTLLGASAASL+AYC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of Tan0011850 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 7  AVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ 63
          A +AF+ VAASLSMVLAS+EAA+PAPGPSS ASATLPVVGTLLGASAASL+AYCLQ
Sbjct: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

[Close]

BLAST of Tan0011850 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale])

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          ME+KKI++ A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY 
Sbjct: 40 MELKKISI-AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

[Close]

BLAST of Tan0011850 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii])

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          ME+KKI+ +A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY 
Sbjct: 40 MELKKIS-TAVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

[Close]

BLAST of Tan0011850 vs. NCBI nr
Match: KAG6603249.1 (Fructokinase-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 12  VVVAASLSMVLASNEAAAPAPGPSS-GASATLPVVGTLLGASAASLVAYCLQ 63
           +  AASL+M LAS E AAPAPGPSS  A+AT+PVVGTLLGAS ASL+A+CLQ
Sbjct: 589 IAAAASLTMALASTEVAAPAPGPSSAAAAATVPVVGTLLGASVASLIAFCLQ 640

[Close]

BLAST of Tan0011850 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-15
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          MEMK  A +AF+ V ASLSMVLAS+EAA+PAPGPSSG SATLPVVGTLLGASAASL+AYC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of Tan0011850 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-08
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          ME+KKI++ A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY 
Sbjct: 40 MELKKISI-AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

[Close]

BLAST of Tan0011850 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          ME+KKI+ +A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY 
Sbjct: 40 MELKKIS-TAVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

[Close]

BLAST of Tan0011850 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          ME+KKI+  A +VVAAS+S  LA++E +APAP P+SGASATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKIS-CAVLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 61

[Close]

BLAST of Tan0011850 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          M+MKKI+  A +V AAS+S VLAS+++ APAPGPSSGASA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKIS-CAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of Tan0011850 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYC 60
          MEMKKIA    +  AAS++ V+A+ E  APAPGP+S ASA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGV-LFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Tan0011850 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-05
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGP-SSGASATLPVVGTLLGASAASLVAY 60
          MEMKKIA    V  AAS++ V+A+ E  APAPGP +SGAS  +P +G+L+GAS  SL AY
Sbjct: 1  MEMKKIACGV-VFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 61 CL 62
           L
Sbjct: 61 YL 60

The following BLAST results are available for this feature:

BLAST of Tan0011850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	2.2e-06	55.74	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Tan0011850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035760.1	1.2e-14	82.26	arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga...	[more]
KAE8649766.1	1.1e-12	85.71	hypothetical protein Csa_011936, partial [Cucumis sativus]	[more]
PON91671.1	6.5e-08	68.85	hypothetical protein TorRG33x02_125020 [Trema orientale]	[more]
PON58107.1	8.5e-08	68.85	hypothetical protein PanWU01x14_168770 [Parasponia andersonii]	[more]
KAG6603249.1	7.2e-07	73.08	Fructokinase-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of Tan0011850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E271	5.9e-15	82.26	Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A2P5F1L3	3.1e-08	68.85	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV...	[more]
A0A2P5CAP7	4.1e-08	68.85	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE...	[more]
A0A2K1ZXB0	5.9e-07	64.52	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 ...	[more]
A0A059DIY4	7.7e-07	64.52	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02...	[more]

BLAST of Tan0011850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.5e-07	55.74	arabinogalactan protein 23	[more]
AT2G41905.1	3.2e-05	56.45	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011850.1	Tan0011850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane