Tan0011692 (gene) Snake gourd v1

Overview


Name	Tan0011692
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S Acidic ribosomal protein
Location	LG05: 1114159 .. 1115269 (+)
RNA-Seq Expression	Tan0011692
Synteny	Tan0011692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGACCGACGGCTTCGATCTCTCTCCCTCTTGGTTGCAGCTTCTGTTTCGAAGTTCTCAAGTATTACTTCTCGTGCCATTATATTTTTCTTCACCGATTTCTTTTCTGTAAGGTCTTCTCATTTCTGGTGTTTGGCATTTGATTTTGTTGAAGCAGAGATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTTGGTGGCAACACGAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGGTTATTCTTTCACAATCTTTCGTTTACTTAAAGTTTAAGTTACCATTCTAGTGTTGTTACTGTTTGAGATAGAGTTGATGTGTTGGGGTTTGGGAATGATTGGCTTTTGTTCGATCCGAAAGTTTAGGTTAGACTGCCATTTTTATTCTTGATTTAGTTAGGGAGTTGCTGGAAGTGAAGTGAAATCTTGTAATGTCTGGCCGAAACGATTGGTGTTCTTAGCGAATTTGTGTTAAGATTTTTGCTGGGGTTTTATCTACAGTCGGGGCTGAGGTAGACGAGGACATGATCGGCTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTACCGTCTGGCGGAGGTGCAGTCGCCGTCGCCCCTGCTGGTGGTTCCGCTGGTAGTGCTGCAGCACCAGCCCCAGCGGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGATGTAAGTTTTGAACCAGTTCTTCTTATGATTACACAGTTTCTTTATATTAATATCTGTGAATTACATGTTCTGTATTGATAATGGAACCTATCTTTCTGCAGGACTTGGGCTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTTATCAGTTAGTGTTTTAGTTAAATTTCGTTCAAGTTTCCGGTCTGTGGTAGCTTGGTAGGGTTTTTCTCTTTAAACTTATTGGAACTCAAAAATTTTGATAGATGAAAGTGCAATTTTCTATTTCAACATTTCAGTGATTACTGTCATATTTGAGTTTTGTGATTTATGATTTCCAATGTTTCTCATCTTATCATGCATGATCAATTTTGGTATTGCAAATTCCC

mRNA sequence

TTGACCGACGGCTTCGATCTCTCTCCCTCTTGGTTGCAGCTTCTGTTTCGAAGTTCTCAAAGATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTTGGTGGCAACACGAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTCGGGGCTGAGGTAGACGAGGACATGATCGGCTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTACCGTCTGGCGGAGGTGCAGTCGCCGTCGCCCCTGCTGGTGGTTCCGCTGGTAGTGCTGCAGCACCAGCCCCAGCGGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGATGACTTGGGCTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTTATCAGTTAGTGTTTTAGTTAAATTTCGTTCAAGTTTCCGGTCTGTGGTAGCTTGGTAGGGTTTTTCTCTTTAAACTTATTGGAACTCAAAAATTTTGATAGATGAAAGTGCAATTTTCTATTTCAACATTTCAGTGATTACTGTCATATTTGAGTTTTGTGATTTATGATTTCCAATGTTTCTCATCTTATCATGCATGATCAATTTTGGTATTGCAAATTCCC

Coding sequence (CDS)

ATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTTGGTGGCAACACGAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTCGGGGCTGAGGTAGACGAGGACATGATCGGCTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTACCGTCTGGCGGAGGTGCAGTCGCCGTCGCCCCTGCTGGTGGTTCCGCTGGTAGTGCTGCAGCACCAGCCCCAGCGGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGATGACTTGGGCTTCAGCCTCTTTGACTGA

Protein sequence

MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD

Homology

[Close]

BLAST of Tan0011692 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-31
Identity = 78/114 (68.42%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE+ +  LL+++K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           +L+SVPSGGGA+ +      AG  AAPA  E KKEEKVEEKE+SD+D+GFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPAAVAGGGAAPA-EEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of Tan0011692 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-31
Identity = 82/114 (71.93%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD + +  LLSQ+ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           K ASVP GGG VAVA A  +AG  AAPA AE KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAAPAAG-GAAPA-AEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of Tan0011692 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D I  LLSQVKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           +LASVPSGGG    A AGG  G A A A  E KKEEK E  E+SD++LGFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]

BLAST of Tan0011692 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGG AV+ AP+ G  G AAAPA   EKKE K EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Tan0011692 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-28
Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPS GGG VAVA A    G     + AE KKEEK EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Tan0011692 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 103/115 (89.57%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 70  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 129

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG+AG  AAPA AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 130 KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 184

[Close]

BLAST of Tan0011692 vs. NCBI nr
Match: KAG7010354.1 (60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 103/115 (89.57%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG+AG  AAPA AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. NCBI nr
Match: XP_022944125.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG AG  AAPA AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. NCBI nr
Match: XP_022986046.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG+AG  AAPA  E+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. NCBI nr
Match: XP_023512871.1 (60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG+AG  AA A AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAAAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. ExPASy TrEMBL
Match: A0A6J1FYH3 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448674 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG AG  AAPA AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAV + APAGG+AG  AAPA  E+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 105/115 (91.30%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDED I SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGAVAV APAGG+AG  AAPA AEEKKEEKVEEKEDSDDDLGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of Tan0011692 vs. ExPASy TrEMBL
Match: A0A5A7SR49 (60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00400 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.4e-40
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+ I  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGA+AV A AGG+AG  AAPAPAE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. ExPASy TrEMBL
Match: A0A1S3C8T5 (60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.4e-40
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+ I  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGGA+AV A AGG+AG  AAPAPAE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Tan0011692 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGG AV+ AP+ G  G AAAPA   EKKE K EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Tan0011692 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPSGGG AV+ AP+ G  G AAAPA   EKKE K EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Tan0011692 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-29
Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPS GGG VAVA A    G     + AE KKEEK EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Tan0011692 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-29
Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPS GGG VAVA A    G     + AE KKEEK EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Tan0011692 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-29
Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGFSLFD 115
           KLASVPS GGG VAVA A    G     + AE KKEEK EEKE+SDDD+GFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

The following BLAST results are available for this feature:

BLAST of Tan0011692 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	1.2e-31	68.42	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	4.7e-31	71.93	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P41099	1.4e-30	69.30	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
Q9LXM8	2.2e-28	66.96	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
Q9SLF7	3.7e-28	65.22	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]

BLAST of Tan0011692 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570492.1	5.1e-43	89.57	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7010354.1	5.1e-43	89.57	60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022944125.1	1.1e-42	89.57	60S acidic ribosomal protein P2B-like [Cucurbita moschata]	[more]
XP_022986046.1	1.5e-42	88.70	60S acidic ribosomal protein P2B-like [Cucurbita maxima]	[more]
XP_023512871.1	4.3e-42	88.70	60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0011692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYH3	5.5e-43	89.57	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1J9Z4	7.2e-43	88.70	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390...	[more]
A0A6J1DJB9	2.1e-42	91.30	60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A5A7SR49	4.4e-40	83.48	60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C8T5	4.4e-40	83.48	60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE...	[more]

BLAST of Tan0011692 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44590.2	1.5e-29	66.96	60S acidic ribosomal protein family	[more]
AT3G44590.1	1.5e-29	66.96	60S acidic ribosomal protein family	[more]
AT2G27710.1	2.6e-29	65.22	60S acidic ribosomal protein family	[more]
AT2G27710.2	2.6e-29	65.22	60S acidic ribosomal protein family	[more]
AT2G27710.3	2.6e-29	65.22	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..113 e-value: 5.5E-23 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..114
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..114
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 4.2E-24 score: 86.5
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..114
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..114 e-value: 6.29992E-33 score: 109.275
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..114 score: 15.924389

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011692.1	Tan0011692.1	mRNA
Tan0011692.2	Tan0011692.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome