Tan0011653 (gene) Snake gourd v1

Overview


Name	Tan0011653
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 11832331 .. 11832588 (-)
RNA-Seq Expression	Tan0011653
Synteny	Tan0011653

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTTCAACCTCTAGCCACTCTCATTCATCAAATCCTTCCATAGAATCCTCCTCCTCTACTTTTGAAGATGATTCCAAACCTCTATGGCAATATGTGACTAAGATTAAAAAATTGAGTGATGGGGGTGGAAACTTTTTATGGCAATGCAATTTTTGTCACGCCACAAAAAAAGAGCTCTTATACAAGAGTTAGGGCTCATTTGTTGAAGATAAATGGTCAAGGGATTGGAATGTGTCTAAAAGTCACTCCTAA

mRNA sequence

ATGGCATCTTCAACCTCTAGCCACTCTCATTCATCAAATCCTTCCATAGAATCCTCCTCCTCTACTTTTGAAGATGATTCCAAACCTCTATGGCAATATGTGACTAAGATTAAAAAATTGAGTGATGGGGATAAATGGTCAAGGGATTGGAATGTGTCTAAAAGTCACTCCTAA

Coding sequence (CDS)

ATGGCATCTTCAACCTCTAGCCACTCTCATTCATCAAATCCTTCCATAGAATCCTCCTCCTCTACTTTTGAAGATGATTCCAAACCTCTATGGCAATATGTGACTAAGATTAAAAAATTGAGTGATGGGGATAAATGGTCAAGGGATTGGAATGTGTCTAAAAGTCACTCCTAA

Protein sequence

MASSTSSHSHSSNPSIESSSSTFEDDSKPLWQYVTKIKKLSDGDKWSRDWNVSKSHS

Homology

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BLAST of Tan0011653 vs. ExPASy TrEMBL
Match: A0A0A0K5G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G220330 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.7e-05
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 16 IESSSSTFEDDSKPLWQYVTKIKKLSDG-------------DKWSRDWNVSKSHS 58
          +E++SST EDDSK LWQYV KIKKLSDG             D WSR+W +SK +S
Sbjct: 1  METNSSTVEDDSKSLWQYVIKIKKLSDGEELIYKSESSLAEDSWSRNWVMSKGYS 55

The following BLAST results are available for this feature:

BLAST of Tan0011653 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011653 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011653 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5G7	8.7e-05	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G220330 PE=4 SV=1	[more]

BLAST of Tan0011653 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011653.1	Tan0011653.1	mRNA