Tan0011552 (gene) Snake gourd v1

Overview


Name	Tan0011552
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	exosome complex component RRP41 homolog
Location	LG10: 1753559 .. 1756251 (-)
RNA-Seq Expression	Tan0011552
Synteny	Tan0011552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACGCCAAAGTTATTGCTGCTGTATATGGATTTCAACAGCCATTATAATTGTATCTACCTCCTTCAAAATGCAATGAACATGAGTAATTTTTGAGCCGTGTATTTACTTAAAAAGGCTTCTGCAAACCTGCTATAAGGTTCAGAATATATAGGAGTCAACATATGAGCGATCAAGCACTGGTTATACTTTCCTCTTGATGCTTTTGTTTTGAAGTTTGAATTCTTAATGTGCATTAGTAACCCGTTGTCTCAATCTGTGACTTCTTTCAGGTGCGCTGTGAGTACACCATGGCTAATCTCTGTGTTTGTGTGTGTACACTGTGCTGCCACTCGATATATTTGAATGGTAATTGTGTTAAAGTTCTGGTTCCATCATCATGATTGACTGGTTGTAGTGTAGTACTGTAATTGATTTCATGAAATAGGGTCATGGTGAGTATTCGTATCTTGAAGCATACGAAATTTTTAACCATGAAGGTGGTATTTAGGTTATTCTCTTCAAAATATGGTTAGTAGATGTACAGCTAGTGCAGTGTAGGTGTAGTAATTCCTTGGTTAAATCACTAATTAACCCAAAAGCTTAAGCTGATAGGTAATGTTAAATTTAATTATATCAACATTAGTCTAACACTCCCCTCAAGACCTCCTACTCTGATACCATATTAAATCACCAATTAACCCAAAAGCTTAAGCTAATAGGTAATGGTAAATTTAATTATATCAACACTAGTCAAACACCTTGTTAAGTAAAATTGCTGGAGGTGTAACCAAATAGAACGAAATAAAAACAGATGGAAAAGAACAATGTTAGAGCTGAATTTATATCTATTTTGTATTGAGTTATGACATTTGTTACATTCGGGGGATCCGTGGCGATATCTTTAGTTATTCGCCAGATAATGGAGGAATGCATTTCGACACATTTAATGCCTCGGTCTCAGGTTTTCTTCAATCATCTTTAGAGATGCTCCTCTATGATTTCGACCCATATCTTTCCTCATTCCTAGTTTTTATGCGAAGATGGATATTTTCATCCAAGTTCTTGAAGCAGATGGAGGTACAGTTAAAGTTTATGACCAAGTCCATCAGACATAGCTCTTAATATACTAGTTTAGTATGGTTTTATTCGAGCAACAATAGAAATTCAAGATAAAATTAGGGGCAATATTCTCCTCAGAGTTGGTGACATTTTATCTAATATACTAGTTTTAGCAAAAATACTTTAGGTTGATATTCTCTTTTCTTGCCATATTCCTGCATATTTGTCATCTTCTTTACACATACCTGTTATTTTGATTTTCTTCTAAAAACAGAAATGGAAGTTTTTCTTGATCTGTTCCTGCTATTTTCTTCTATTGCCTCCTTTCTGCCAAAAATTTCAAGCTCGGCAATCGTATAATTGTTCACTGCCCAGTAGCTCAGAAAGCTATGGTCTCTCTTTTAACAATTTAGCATTTACTGGTCTTATTCTCTCTCCATGGCCCACGTTATTGCACAACTTCTCTCCTTTTGAAGAATCTGGACTGCTTTGTTTAAAATAAGCAGGAAACATGTAGATATAGACTTATAGTTTACTTATTTTGCCAACTTTGTTGTAAAAAAAGTTTACAATTAGATGATATGAGGTTCCATCTCAAAATCAATTGACAATGAGAAGAGTAGCCCATATATCATATTGTGAGGTTTCTCTTCACTTTTTCAACGTGGGATCCTTAACATTTACTTATTTCTCTTATAAAAGAAACAAAATGATTCATACATATTTCCAAGTTTTCGTATCTGCAGGTACTAGATCAGCACATAGCAATGCTGCAACTTTGGCTCTTGCTAATGCAGGAACTCCCATGAATGATATTGTTACTTCCTGCAGTTCTTGATACCTTAATAGTAGTATAGCACTCCTCTGCTTGGTAATTTTGATTCCGCCTCCCCCTTCATTCAGTCGCATGCAAAAACATGCGGATGAATCAGATGTGGACCTCCATGTTTATCTTTGTTTATCCCGTTACCTTTAGTTTTCTTTCTATCGTTCTCTTCTTTGTCTTTTTATTTTAAATGTTGCATGGTTCACTAGAATTAATATGATTTGACATTATGATATGGACAGATTTGAACTATGTAGAGGATAGTGCTGGTGGCCCTGATGTTACTGTAGGTTTTCTACCTACGTTGGATAAGGTCACTCTTCTTCAATCTTCAGGTTCTTTAACTTTTTGTTTTTTCTCCTCTTTCTAGCATGATCAATTTGGAGCTTTTGTGCAAGACAGTGGGCTACAATTTGAAACTGAATTGATTAGTTTTGTTTCTCCTCTCTTTGTCCATTTCGACTGCTTTCATTTTTGTATTTCTTTCTCTAAACTTGAACTAGTCTCTGCAATTAATGTTCACTTTCATCAATTATTACGCCATCTTGATATAATCATTCAATGCAAATGGAGGCTATTGATATGTTTGAGAATGTTGTGTAGCTTGCAATTGAGAGCTGCAATTAGCTAGTTACATTCGAGAAGTAAAGATTACTTTTACAAAAAGCCATTGTTATTGAATCAATACCAATCTACTGTTTTCTATACAATCATATTGCAATTGATGATGATTAGGTTATCCGAACTTTCTTCTGTTTTTGTAGGCAAATAATGTTGGAAAATGCCAAGGCATCTCGAATATTGCCATGGTGCATAACCTGA

mRNA sequence

ATGGGTAACGCCAAAGTTATTGCTGCTGTGCGCTGTGAGTACACCATGGCTAATCTCTGTGTTTTTATGACATTTGTTACATTCGGGGGATCCGTGGCGATATCTTTAGTTATTCGCCAGATAATGGAGGAATGCATTTCGACACATTTAATGCCTCGGTCTCAGATGGATATTTTCATCCAAGTTCTTGAAGCAGATGGAGGTACTAGATCAGCACATAGCAATGCTGCAACTTTGGCTCTTGCTAATGCAGGAACTCCCATGAATGATATTGTTACTTCCTGCAATTTGAACTATGTAGAGGATAGTGCTGGTGGCCCTGATGTTACTGTAGGTTTTCTACCTACGTTGGATAAGGCTATTGATATGTTTGAGAATGTTGTGCAAATAATGTTGGAAAATGCCAAGGCATCTCGAATATTGCCATGGTGCATAACCTGA

Coding sequence (CDS)

ATGGGTAACGCCAAAGTTATTGCTGCTGTGCGCTGTGAGTACACCATGGCTAATCTCTGTGTTTTTATGACATTTGTTACATTCGGGGGATCCGTGGCGATATCTTTAGTTATTCGCCAGATAATGGAGGAATGCATTTCGACACATTTAATGCCTCGGTCTCAGATGGATATTTTCATCCAAGTTCTTGAAGCAGATGGAGGTACTAGATCAGCACATAGCAATGCTGCAACTTTGGCTCTTGCTAATGCAGGAACTCCCATGAATGATATTGTTACTTCCTGCAATTTGAACTATGTAGAGGATAGTGCTGGTGGCCCTGATGTTACTGTAGGTTTTCTACCTACGTTGGATAAGGCTATTGATATGTTTGAGAATGTTGTGCAAATAATGTTGGAAAATGCCAAGGCATCTCGAATATTGCCATGGTGCATAACCTGA

Protein sequence

MGNAKVIAAVRCEYTMANLCVFMTFVTFGGSVAISLVIRQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSCNLNYVEDSAGGPDVTVGFLPTLDKAIDMFENVVQIMLENAKASRILPWCIT

Homology

[Close]

BLAST of Tan0011552 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-28
Identity = 86/180 (47.78%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 1   MGNAKVIAA--------------------VRCEYTMANLCV--FMTFVTFGGSVAISLVI 60
           MGN KVIAA                    V CEY+MA               S  +SLVI
Sbjct: 40  MGNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ ME CI T LMP SQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM D+  SC   
Sbjct: 100 RQTMEACILTELMPHSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGG DVTVG LP LDK           ++ FE V  +  E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKA 219

[Close]

BLAST of Tan0011552 vs. ExPASy Swiss-Prot
Match: Q7YRA3 (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-15
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 8   AAVRCEYTMANLCVFMTFVTFGG---SVAISLVIRQIMEECISTHLMPRSQMDIFIQVLE 67
           A V C+Y+ A            G   S  + L +RQ  E  I T L PRSQ+DI++QVL+
Sbjct: 70  ALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 129

Query: 68  ADGGTRSAHSNAATLALANAGTPMNDIVTSC-----------NLNYVEDSAGGPDVTVGF 127
           ADGGT +A  NAATLA+ +AG PM D V +C           +L++VE++AGGP + +  
Sbjct: 130 ADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALAL 189

Query: 128 LPT------LDKAIDMFENVVQIMLE-NAKASR 140
           LP       L+    + E+ ++ +LE  A+ASR
Sbjct: 190 LPASGQIALLEMDARLHEDHLEQVLEAAARASR 222

[Close]

BLAST of Tan0011552 vs. ExPASy Swiss-Prot
Match: Q9NPD3 (Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-15
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 8   AAVRCEYTMANLCVFMTFVTFGG---SVAISLVIRQIMEECISTHLMPRSQMDIFIQVLE 67
           A V C+Y+ A            G   S  + L +RQ  E  I T L PRSQ+DI++QVL+
Sbjct: 70  ALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 129

Query: 68  ADGGTRSAHSNAATLALANAGTPMNDIVTSC-----------NLNYVEDSAGGPDVTVGF 116
           ADGGT +A  NAATLA+ +AG PM D V +C           +L++VE++AGGP + +  
Sbjct: 130 ADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALAL 189

[Close]

BLAST of Tan0011552 vs. ExPASy Swiss-Prot
Match: Q921I9 (Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-15
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 8   AAVRCEYTMANLCVFMTFVTFGG---SVAISLVIRQIMEECISTHLMPRSQMDIFIQVLE 67
           A V C+Y+ A            G   S  + L +RQ  E  I T L PRSQ+DI++QVL+
Sbjct: 70  ALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 129

Query: 68  ADGGTRSAHSNAATLALANAGTPMNDIVTSC-----------NLNYVEDSAGGPDVTVGF 116
           ADGGT +A  NAATLA+ +AG PM D V +C           +L++VE++AGGP + +  
Sbjct: 130 ADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALAL 189

[Close]

BLAST of Tan0011552 vs. ExPASy Swiss-Prot
Match: Q5JIR6 (Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-14
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 31  SVAISLVIRQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMND 90
           SV IS VIR  +E  +  H+ PR+ +D+FI++L+AD GTR A   AA+LALA+AG PM D
Sbjct: 98  SVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKD 157

Query: 91  IVTSC-----------NLNYVEDSAGGPDVTVGFLPTLDKAI----------DMFENVVQ 138
           +V +C           +LN  ED+ G  DV V  +P  +             D F   V+
Sbjct: 158 LVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFLEAVR 217

[Close]

BLAST of Tan0011552 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 103/180 (57.22%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KVIAA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVIAAVYGPREVQNRSQQLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           ID+FENV+Q+ +E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. NCBI nr
Match: XP_038891797.1 (exosome complex component RRP41 homolog [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.7e-36
Identity = 102/180 (56.67%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           ID+FENV+Q+ +E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFENVMQLAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. NCBI nr
Match: XP_022941604.1 (exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_022987997.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_023513826.1 exosome complex component RRP41 homolog [Cucurbita pepo subsp. pepo] >KAG6600116.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030788.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 3.5e-36
Identity = 101/180 (56.11%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           +D+FENV+Q+ +E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. NCBI nr
Match: XP_004143616.1 (exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetical protein Csa_000356 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-35
Identity = 100/180 (55.56%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           ID+FE+V+++ +E  KA
Sbjct: 160 YLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. NCBI nr
Match: XP_008445878.1 (PREDICTED: exosome complex component RRP41 homolog [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-35
Identity = 100/180 (55.56%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           ID+FE+V+++ +E  KA
Sbjct: 160 YLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. ExPASy TrEMBL
Match: A0A6J1DWZ5 (exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111024273 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.9e-37
Identity = 103/180 (57.22%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KVIAA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVIAAVYGPREVQNRSQQLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           ID+FENV+Q+ +E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. ExPASy TrEMBL
Match: A0A6J1JKC7 (exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485363 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 101/180 (56.11%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           +D+FENV+Q+ +E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. ExPASy TrEMBL
Match: A0A6J1FNX1 (exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446911 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 101/180 (56.11%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 40  MGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 100 RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           +D+FENV+Q+ +E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKA 219

[Close]

BLAST of Tan0011552 vs. ExPASy TrEMBL
Match: A0A498IE61 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041559 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35
Identity = 92/158 (58.23%), Postives = 108/158 (68.35%), Query Frame = 0


Query: 1   MGNAKVIAAVRCEYTMANLCVFMTFVTFGGSVAISLVIRQIMEECISTHLMPRSQMDIFI 60
           MG  KVIAAVRCEYTMAN   F T         ISLVIRQ ME CI THLMPR+Q+DIF+
Sbjct: 57  MGITKVIAAVRCEYTMAN---FSTGDRMRKPKEISLVIRQTMEACIMTHLMPRTQIDIFV 116

Query: 61  QVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC-----------NLNYVEDSAGGPDV 120
           QVL+ADGGTRSA  NAATLAL++AG PM D+VTSC           ++NYVEDSAGG DV
Sbjct: 117 QVLQADGGTRSACINAATLALSDAGIPMRDLVTSCSAGYLNSTPLLDVNYVEDSAGGADV 176

Query: 121 TVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
           T+G +P LDK           +D+FENV+Q+ +E  KA
Sbjct: 177 TLGIMPKLDKVTLLQMDAKLPLDIFENVMQLSIEGCKA 211

[Close]

BLAST of Tan0011552 vs. ExPASy TrEMBL
Match: A0A5A7SXS5 (Exosome complex component RRP41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00550 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35
Identity = 100/180 (55.56%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MGNAKVIAA-------------------VRCEYTMANLCVFMTFVTFGG---SVAISLVI 60
           MGN KV+AA                   VRCEYTMAN           G   S  ISLVI
Sbjct: 19  MGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 78

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ MEECI THLMPRSQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM DIVTSC   
Sbjct: 79  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAG 138

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGGPDVTVGFLP LDK           ID+FE+V+++ +E  KA
Sbjct: 139 YLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKA 198

[Close]

BLAST of Tan0011552 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-29
Identity = 86/180 (47.78%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 1   MGNAKVIAA--------------------VRCEYTMANLCV--FMTFVTFGGSVAISLVI 60
           MGN KVIAA                    V CEY+MA               S  +SLVI
Sbjct: 40  MGNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ ME CI T LMP SQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM D+  SC   
Sbjct: 100 RQTMEACILTELMPHSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGG DVTVG LP LDK           ++ FE V  +  E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKA 219

[Close]

BLAST of Tan0011552 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-29
Identity = 86/180 (47.78%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 1   MGNAKVIAA--------------------VRCEYTMANLCV--FMTFVTFGGSVAISLVI 60
           MGN KVIAA                    V CEY+MA               S  +SLVI
Sbjct: 40  MGNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVI 99

Query: 61  RQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTSC--- 120
           RQ ME CI T LMP SQ+DIF+QVL+ADGGTRSA  NAATLALA+AG PM D+  SC   
Sbjct: 100 RQTMEACILTELMPHSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAG 159

Query: 121 --------NLNYVEDSAGGPDVTVGFLPTLDKA----------IDMFENVVQIMLENAKA 138
                   +LNYVEDSAGG DVTVG LP LDK           ++ FE V  +  E  KA
Sbjct: 160 YLNSTPLLDLNYVEDSAGGADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKA 219

[Close]

BLAST of Tan0011552 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.4e-04
Identity = 22/69 (31.88%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 35  SLVIRQIMEECISTHLMPRSQMDIFIQVLEADGGTRSAHSNAATLALANAGTPMNDIVTS 94
           S ++ + +E  I     P++ +D+F  VLE+ G   S   + A+LALA+AG  M D++T+
Sbjct: 115 SSMLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITA 174

Query: 95  CNLNYVEDS 104
            +++ +  S
Sbjct: 175 VSVSCIGKS 183

The following BLAST results are available for this feature:

BLAST of Tan0011552 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SP08	6.2e-28	47.78	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41...	[more]
Q7YRA3	2.1e-15	38.56	Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3	[more]
Q9NPD3	6.0e-15	41.80	Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3	[more]
Q921I9	6.0e-15	41.80	Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3	[more]
Q5JIR6	6.6e-14	38.28	Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-91...	[more]

BLAST of Tan0011552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157614.1	2.0e-36	57.22	exosome complex component RRP41 homolog [Momordica charantia]	[more]
XP_038891797.1	2.7e-36	56.67	exosome complex component RRP41 homolog [Benincasa hispida]	[more]
XP_022941604.1	3.5e-36	56.11	exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exo...	[more]
XP_004143616.1	2.3e-35	55.56	exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetic...	[more]
XP_008445878.1	2.3e-35	55.56	PREDICTED: exosome complex component RRP41 homolog [Cucumis melo]	[more]

BLAST of Tan0011552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWZ5	9.9e-37	57.22	exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1JKC7	1.7e-36	56.11	exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485...	[more]
A0A6J1FNX1	1.7e-36	56.11	exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A498IE61	1.1e-35	58.23	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041559 PE=4 SV=1	[more]
A0A5A7SXS5	1.1e-35	55.56	Exosome complex component RRP41-like protein OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Tan0011552 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61620.1	4.4e-29	47.78	3'-5'-exoribonuclease family protein	[more]
AT3G61620.2	4.4e-29	47.78	3'-5'-exoribonuclease family protein	[more]
AT4G27490.1	6.4e-04	31.88	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 2..140 e-value: 1.2E-24 score: 89.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 32..87 e-value: 4.5E-10 score: 40.1
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 8..121
None	No IPR available	PANTHER	PTHR11953:SF0	EXOSOME COMPLEX COMPONENT RRP41	coord: 8..121
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011552.1	Tan0011552.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003824	catalytic activity