Tan0011528 (gene) Snake gourd v1

Overview


Name	Tan0011528
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG10: 64665264 .. 64665688 (+)
RNA-Seq Expression	Tan0011528
Synteny	Tan0011528

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTTGAGAAAATTTTCAAAGGCACTACCAAGAAATCGATGGTCACTAACACAACTCCTCTCAAGTTTGTTGCCAAAGGAAAAAAAATGAAGGTTGAAAAAGCACAAGAGGGAGGTGAGAGACGCCGACTAACTCTAAAAGAGAGACAAGAAAAAGTTTACCCTTTTCCAGATTCAGGCATCGCAAATATGTTAGAACAACTCTTGGAAAAACAACTCATTGAACTACCTAAATGTAAGCGACCTGAAGAGATAAGAAGGGTCAATGATCCTAATTACTACAAGTATCACCAAGTCATTAGTCACCCGGTGGAAAAATGCTTTGTTCTAAAAGAGTTAATCCTAAAATTAGCTAAAGAAAAGAAGATTGAGTTGGATCTAGATGAAGTAGTCTAA

mRNA sequence

ATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTTGAGAAAATTTTCAAAGGCACTACCAAGAAATCGATGGTCACTAACACAACTCCTCTCAAAGGGAGGTGAGAGACGCCGACTAACTCTAAAAGAGAGACAAGAAAAAGTTTACCCTTTTCCAGATTCAGGCATCGCAAATATGTTAGAACAACTCTTGGAAAAACAACTCATTGAACTACCTAAATGTAAGCGACCTGAAGAGATAAGAAGGGTCAATGATCCTAATTACTACAAGTATCACCAAGTCATTAGTCACCCGGTGGAAAAATGCTTTGTTCTAAAAGAGTTAATCCTAAAATTAGCTAAAGAAAAGAAGATTGAGTTGGATCTAGATGAAGTAGTCTAA

Coding sequence (CDS)

ATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTTGAGAAAATTTTCAAAGGCACTACCAAGAAATCGATGGTCACTAACACAACTCCTCTCAAAGGGAGGTGAGAGACGCCGACTAACTCTAAAAGAGAGACAAGAAAAAGTTTACCCTTTTCCAGATTCAGGCATCGCAAATATGTTAGAACAACTCTTGGAAAAACAACTCATTGAACTACCTAAATGTAAGCGACCTGAAGAGATAAGAAGGGTCAATGATCCTAATTACTACAAGTATCACCAAGTCATTAGTCACCCGGTGGAAAAATGCTTTGTTCTAAAAGAGTTAATCCTAAAATTAGCTAAAGAAAAGAAGATTGAGTTGGATCTAGATGAAGTAGTCTAA

Protein sequence

MSRKRRKKLRTLRKFSKALPRNRWSLTQLLSKGGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEVV

Homology

[Close]

BLAST of Tan0011528 vs. NCBI nr
Match: KAA0033246.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19599.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 80/93 (86.02%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LPKCKRPE+  +V+DPNY KYH
Sbjct: 315 GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPKCKRPEQAGKVDDPNYCKYH 374

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           QVISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Sbjct: 375 QVISHPVEKCFVLKELILRLAREKKIELDLEEV 407

[Close]

BLAST of Tan0011528 vs. NCBI nr
Match: KAA0039582.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK01718.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS I +MLEQLLEKQLI+LPKCKRP++  +V+DPNY+KYH
Sbjct: 24  GSERRRLTLKERQEKVYPFPDSDIVDMLEQLLEKQLIQLPKCKRPKQAGKVDDPNYFKYH 83

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           QVISHPVEKCFVLKELIL LA+EKKIELDL+EV
Sbjct: 84  QVISHPVEKCFVLKELILGLAREKKIELDLEEV 116

[Close]

BLAST of Tan0011528 vs. NCBI nr
Match: KAA0062536.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 78/93 (83.87%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH
Sbjct: 63  GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYH 122

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           +VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Sbjct: 123 RVISHPVEKCFVLKELILRLAREKKIELDLEEV 155

[Close]

BLAST of Tan0011528 vs. NCBI nr
Match: KAA0055958.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 78/93 (83.87%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH
Sbjct: 63  GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYH 122

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           +VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Sbjct: 123 RVISHPVEKCFVLKELILRLAREKKIELDLEEV 155

[Close]

BLAST of Tan0011528 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-35
Identity = 77/93 (82.80%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH
Sbjct: 220 GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYH 279

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           +VISHPVEKCFVLKELIL+LA+EK+IELDL+EV
Sbjct: 280 RVISHPVEKCFVLKELILRLAREKRIELDLEEV 312

[Close]

BLAST of Tan0011528 vs. ExPASy TrEMBL
Match: A0A5A7STD3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00030 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.5e-37
Identity = 80/93 (86.02%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LPKCKRPE+  +V+DPNY KYH
Sbjct: 315 GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPKCKRPEQAGKVDDPNYCKYH 374

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           QVISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Sbjct: 375 QVISHPVEKCFVLKELILRLAREKKIELDLEEV 407

[Close]

BLAST of Tan0011528 vs. ExPASy TrEMBL
Match: A0A5A7T7Z3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00430 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.5e-36
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS I +MLEQLLEKQLI+LPKCKRP++  +V+DPNY+KYH
Sbjct: 24  GSERRRLTLKERQEKVYPFPDSDIVDMLEQLLEKQLIQLPKCKRPKQAGKVDDPNYFKYH 83

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           QVISHPVEKCFVLKELIL LA+EKKIELDL+EV
Sbjct: 84  QVISHPVEKCFVLKELILGLAREKKIELDLEEV 116

[Close]

BLAST of Tan0011528 vs. ExPASy TrEMBL
Match: A0A5A7V7Z6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00070 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.2e-36
Identity = 78/93 (83.87%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH
Sbjct: 63  GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYH 122

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           +VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Sbjct: 123 RVISHPVEKCFVLKELILRLAREKKIELDLEEV 155

[Close]

BLAST of Tan0011528 vs. ExPASy TrEMBL
Match: A0A5A7ULK6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00840 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.2e-36
Identity = 78/93 (83.87%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH
Sbjct: 63  GSERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYH 122

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           +VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Sbjct: 123 RVISHPVEKCFVLKELILRLAREKKIELDLEEV 155

[Close]

BLAST of Tan0011528 vs. ExPASy TrEMBL
Match: A0A5D3DYN4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001990 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.1e-35
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 33  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYH 92
           G E+R+ TLKERQEKVYPFPDS +A+MLEQLLE QLI+LP+CKRPE+ R+V+DPNY KYH
Sbjct: 25  GDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPEQARKVDDPNYCKYH 84

Query: 93  QVISHPVEKCFVLKELILKLAKEKKIELDLDEV 126
           +VISHPVEKCFVLKELILKLA+EKKIELD+DEV
Sbjct: 85  RVISHPVEKCFVLKELILKLAREKKIELDIDEV 117

The following BLAST results are available for this feature:

BLAST of Tan0011528 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011528 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033246.1	1.8e-36	86.02	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19599.1 ty3-gyp...	[more]
KAA0039582.1	1.1e-35	83.87	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK01718.1 retrotranspos...	[more]
KAA0062536.1	1.5e-35	83.87	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055958.1	1.5e-35	83.87	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_031742390.1	3.3e-35	82.80	uncharacterized protein LOC116401672 [Cucumis sativus]	[more]

BLAST of Tan0011528 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STD3	8.5e-37	86.02	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T7Z3	5.5e-36	83.87	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V7Z6	7.2e-36	83.87	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7ULK6	7.2e-36	83.87	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DYN4	6.1e-35	80.65	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Tan0011528 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33437	OS06G0361200 PROTEIN	coord: 12..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011528.1	Tan0011528.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding