Tan0011440 (gene) Snake gourd v1

Overview


Name	Tan0011440
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG10: 22712188 .. 22713057 (+)
RNA-Seq Expression	Tan0011440
Synteny	Tan0011440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGACATCAATACAAATACAAAATTCATTTACACGTGTCTCATTTCCATTCGCTGGTTGAAATCTCGTGTGAACAAATTGGCACGCCCGGTGGGACCTCTCTACCTCTCATCTCTTTCTCCTTCAAATCAAATCAAATCAAGTCATGGCGTCAAAGAAAGTCGCATCAAACACTGCTGCTGCAAGCAACACCTACATGGGTCCAATAACTCGCAGTCGTTCTAAAGAGGTCGAGGCAAGTGATGATCGAACCCCTGATGCAATGGCAACAAACATCATCAAACTACTGGATAAAACTTCCAAAGGCAAGCTTGTCATCAAAGATAATCCCTTATTTCACCAGTCAACTCCAACTCCTAATCAACAGAGAGAGACATCAAATCAGGATGTAATGTCAGTCATGATGGCTGATGTGGACCCTGACGAAAGGATGGCGAAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGGCTACCTCAAAAGTTAAGTCCAAAACAAACAAACGACTCAATCCAGCCAAACCCCTACAGTAAGAAACAACGACAAGGGGAAAAATATCGTCCAAGAGGAGCAACCGCCTCAACCAGCTTCAGTTGCTTCTTTGTCCGTCCAACAACTACAAGACATGATCATGAGTTCTATCAGAGCTTAGTATAGCGGACCCGTTCAAAATCCTCTCACGTACTCCAAACTATACACCAAGAGGATTGGCAACTTGAGGATGCCCACAGGATACCAACCTCCAAAATTCCAGCTGTCACACCCCCTCCCGAACCACTTGCTAACTTAGCACGGGAGATTTGCAGAAAGCCAACAGATTGTTGTTACCTCTTAACAATACCTG

mRNA sequence

CTGACATCAATACAAATACAAAATTCATTTACACGTGTCTCATTTCCATTCGCTGGTTGAAATCTCGTGTGAACAAATTGGCACGCCCGGTGGGACCTCTCTACCTCTCATCTCTTTCTCCTTCAAATCAAATCAAATCAAGTCATGGCGTCAAAGAAAGTCGCATCAAACACTGCTGCTGCAAGCAACACCTACATGGGTCCAATAACTCGCAGTCGTTCTAAAGAGGTCGAGGCAAGTGATGATCGAACCCCTGATGCAATGGCAACAAACATCATCAAACTACTGGATAAAACTTCCAAAGGCAAGCTTGTCATCAAAGATAATCCCTTATTTCACCAGTCAACTCCAACTCCTAATCAACAGAGAGAGACATCAAATCAGGATGTAATGTCAGTCATGATGGCTGATGTGGACCCTGACGAAAGGATGGCGAAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGGCTACCTCAAAAGTTAAGTCCAAAACAAACAAACGACTCAATCCAGCCAAACCCCTACAGTAAGAAACAACGACAAGGGGAAAAATATCGTCCAAGAGGAGCAACCGCCTCAACCAGCTTCAGTTGCTTCTTTGTCCGTCCAACAACTACAAGACATGATCATGAGTTCTATCAGAGCTTAGTATAGCGGACCCGTTCAAAATCCTCTCACGTACTCCAAACTATACACCAAGAGGATTGGCAACTTGAGGATGCCCACAGGATACCAACCTCCAAAATTCCAGCTGTCACACCCCCTCCCGAACCACTTGCTAACTTAGCACGGGAGATTTGCAGAAAGCCAACAGATTGTTGTTACCTCTTAACAATACCTG

Coding sequence (CDS)

ATGGCGTCAAAGAAAGTCGCATCAAACACTGCTGCTGCAAGCAACACCTACATGGGTCCAATAACTCGCAGTCGTTCTAAAGAGGTCGAGGCAAGTGATGATCGAACCCCTGATGCAATGGCAACAAACATCATCAAACTACTGGATAAAACTTCCAAAGGCAAGCTTGTCATCAAAGATAATCCCTTATTTCACCAGTCAACTCCAACTCCTAATCAACAGAGAGAGACATCAAATCAGGATGTAATGTCAGTCATGATGGCTGATGTGGACCCTGACGAAAGGATGGCGAAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGGCTACCTCAAAAGTTAA

Protein sequence

MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYLKS

Homology

[Close]

BLAST of Tan0011440 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK ASN++ ASN Y GPITRSRSK +    D+  + +A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEI 118
           NPL+  S  + ++ ++ ++ DVMSVMMAD+ P+  MA+MERKIN LMKAVEERD EI
Sbjct: 61  NPLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEI 116

[Close]

BLAST of Tan0011440 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL++      ++  + ++ DVMSVMMADV  +  MA+MERKINLLMK V+ERD EI  L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 K 122
           K
Sbjct: 121 K 120

[Close]

BLAST of Tan0011440 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL++      ++  + ++ DVMSVMMADV  +  MA+MERKINLLMK V+ERD EI  L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 K 122
           K
Sbjct: 121 K 120

[Close]

BLAST of Tan0011440 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL++      ++  + ++ DVMSVMMADV  +  MA+MERKINLLMK V+ERD EI  L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 K 122
           K
Sbjct: 121 K 120

[Close]

BLAST of Tan0011440 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL++      ++  + ++ DVMSVMMADV  +  MA+MERKINLLMK V+ERD EI  L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 K 122
           K
Sbjct: 121 K 120

[Close]

BLAST of Tan0011440 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.9e-21
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK ASN++ ASN Y GPITRSRSK +    D+  + +A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEI 118
           NPL+  S  + ++ ++ ++ DVMSVMMAD+ P+  MA+MERKIN LMKAVEERD EI
Sbjct: 61  NPLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEI 116

[Close]

BLAST of Tan0011440 vs. ExPASy TrEMBL
Match: A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.0e-18
Identity = 61/121 (50.41%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKKVASN+  AS+ Y GPITRSRSK +    D+  + +  +I+K L ++ K  +VIK 
Sbjct: 1   MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSN-VVQSILKQLMESPKAGIVIKK 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL+  S    +  ++ ++ DVMSVMMAD+  +  MA+ME+KIN LMKAVEERD EI  L
Sbjct: 61  NPLYDNSDLASSMSKKKAHPDVMSVMMADITVEAAMAEMEKKINFLMKAVEERDHEITAL 120

Query: 121 K 122
           +
Sbjct: 121 R 120

[Close]

BLAST of Tan0011440 vs. ExPASy TrEMBL
Match: A0A5D3BDK1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002000 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK ASN++ AS+ Y GPITR+RSK +    D+  + +A +I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASNSSVASDAYTGPITRNRSKGIIQEQDQGSN-IAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL+  S     + ++ ++ DVMSV+M D+  +  MA+MERKIN LMK VEERD EI  L
Sbjct: 61  NPLYDNSNSASTKSKKEAHPDVMSVIMTDITAEAAMAEMERKINFLMKGVEERDHEITAL 120

Query: 121 K 122
           +
Sbjct: 121 R 120

[Close]

BLAST of Tan0011440 vs. ExPASy TrEMBL
Match: A0A5A7TFN2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00100 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK ASN++ AS+ Y GPITRSRSK +    D+  + +A  I+K L ++ K  +VIK+
Sbjct: 1   MASKKAASNSSVASDAYTGPITRSRSKGITQEQDQGSN-VAQRILKQLIESPKAGIVIKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEI 118
           N L+  S    N+ ++ ++ DV SVMMAD+  +  M +MERKIN LMKAVEERD EI
Sbjct: 61  NSLYDNSDSASNKSKKEAHPDVKSVMMADIMTEAAMTEMERKINFLMKAVEERDHEI 116

[Close]

BLAST of Tan0011440 vs. ExPASy TrEMBL
Match: A0A5A7VFQ8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001510 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 1   MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKD 60
           MASKK AS ++ AS+ Y+GPITRSRSK +    D+  + +A +I+K L ++ K  + +K+
Sbjct: 1   MASKKAASKSSVASDAYIGPITRSRSKGITQEQDQGSN-VAQSILKQLMESPKTGIFLKE 60

Query: 61  NPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAVEERDLEIGYL 120
           NPL+  S  T ++ ++ +  DVMSVMMAD+  +  M  MERK+N LMK +EERD EI  L
Sbjct: 61  NPLYDNSNSTSSKSKKEARPDVMSVMMADISTEAAMVDMERKVNFLMKVMEERDHEITAL 120

Query: 121 K 122
           +
Sbjct: 121 R 120

The following BLAST results are available for this feature:

BLAST of Tan0011440 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	1.0e-20	53.85	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
XP_031739134.1	2.5e-19	52.89	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.5e-19	52.89	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	2.5e-19	52.89	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	2.5e-19	52.89	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]

BLAST of Tan0011440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	4.9e-21	53.85	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UF60	3.0e-18	50.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BDK1	6.6e-18	47.93	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFN2	1.1e-17	50.43	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VFQ8	1.9e-17	46.28	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Tan0011440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011440.1	Tan0011440.1	mRNA