Tan0011332 (gene) Snake gourd v1

Overview
NameTan0011332
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMuDRA-like transposase
LocationLG03: 42275551 .. 42276289 (-)
RNA-Seq ExpressionTan0011332
SyntenyTan0011332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACAAGTGTATTTTTATTAGATACGGCGGTGTATGGGAGGAGGATACATGTACTTATACTGGAGGTCAGATGACTGGTATCGTTGTGCCAGTAATGATAACATTCGAGGAATTTCGGTCGGAGATTTATAATGTTACGTTGATCGACGAGCATGCTTATGACATTGAAATGAGGGTGAAATTCAATACAGACAGTCCATCACCGCCAATGTATATAAGTAACGATCGAGATGTTGTATTTTTTATGAATCATCCAAACGTTGTAAGAGTCTATGTCTGAATAGCAACTGTACAGAAATAATTCGTCGCAAACGATGTAGAAGATGATGAAGATACAAATGAGGACCTAGAGTACAACCCTGTGAACGAAGAAGAAAGCGATGAGGTTGTGGAATACGAAGAAGATGAAGAGGAAATATGACGACGAAGAGGAATATGAAGATATGGTATATGACGATGAGTACGAGTTAGAGGTATCAGACGAATCTGAAGCCGAAGAATAAGGTAGAGACAATGGATACGTTCCAAATGATGGGCTTCATTTTGGAAACGTATAGGATACAAATTGGTTTAGGTCGTCTGATATCTTAAATATATCTCAGGTGACACAGTATGACTTAAACCCTAGTGTGGATGTAATCGAACGATTTATGGGGGGTGACTTGCACGAGTTGGATGATTACTCAAGTCACAATGTCGATGCACACGATGCCCAACCCAACTCACAACCGTAA

mRNA sequence

ATGGACAACAAGTGTATTTTTATTAGATACGGCGGTGTATGGGAGGAGGATACATGTACTTATACTGGAGGTCAGATGACTGGTATCGTTGTGCCAGTAATGATAACATTCGAGGAATTTCGGTCGGAGATTTATAATGTTACGTTGATCGACGAGCATGCTTATGACATTGAAATGAGGGTGAAATTCAATACAGACAGTCCATCACCGCCAATGTATATAAGTAACGATCGAGATGTTGTATTTTTTATGAATCATCCAAACGTTAAGAAAGCGATGAGGTTGTGGAATACGAAGAAGATGAAGAGGAAATATGACGACGAAGAGGAATATGAAGATATGGTATATGACGATGAGTACGAGTTAGAGGTGACACAGTATGACTTAAACCCTAGTGTGGATGTAATCGAACGATTTATGGGGGGTGACTTGCACGAGTTGGATGATTACTCAAGTCACAATGTCGATGCACACGATGCCCAACCCAACTCACAACCGTAA

Coding sequence (CDS)

ATGGACAACAAGTGTATTTTTATTAGATACGGCGGTGTATGGGAGGAGGATACATGTACTTATACTGGAGGTCAGATGACTGGTATCGTTGTGCCAGTAATGATAACATTCGAGGAATTTCGGTCGGAGATTTATAATGTTACGTTGATCGACGAGCATGCTTATGACATTGAAATGAGGGTGAAATTCAATACAGACAGTCCATCACCGCCAATGTATATAAGTAACGATCGAGATGTTGTATTTTTTATGAATCATCCAAACGTTAAGAAAGCGATGAGGTTGTGGAATACGAAGAAGATGAAGAGGAAATATGACGACGAAGAGGAATATGAAGATATGGTATATGACGATGAGTACGAGTTAGAGGTGACACAGTATGACTTAAACCCTAGTGTGGATGTAATCGAACGATTTATGGGGGGTGACTTGCACGAGTTGGATGATTACTCAAGTCACAATGTCGATGCACACGATGCCCAACCCAACTCACAACCGTAA

Protein sequence

MDNKCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMRVKFNTDSPSPPMYISNDRDVVFFMNHPNVKKAMRLWNTKKMKRKYDDEEEYEDMVYDDEYELEVTQYDLNPSVDVIERFMGGDLHELDDYSSHNVDAHDAQPNSQP
Homology
BLAST of Tan0011332 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-14
Identity = 53/158 (33.54%), Postives = 87/158 (55.06%), Query Frame = 0

Query: 1   MDNKCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR 60
           M  KC+  RYG  W+E+   Y GG++TGIVVP+ + ++EF++ IY V  ++   +D+ MR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VKFNTDSPSPPMYISNDRDVVFFMNHPNVKKAMRLWNTKKMKRKYDDEEEYEDMVYDDEY 120
           VK+  D  +PP+YI ND DV  F+   ++ + ++L+ T K     + +  ++ +  D +Y
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSR-VQLYVTLKSYHDENVKMIHDGIGVDRQY 239

Query: 121 ELEVTQYDLNPSVDVIERFMGGDLHEL--DDYSSHNVD 157
           E     Y+ N     I   M   L  L  D+ + H VD
Sbjct: 240 E---ASYEFNQEECDIPLSMNTQLSTLSIDNDNIHAVD 273

BLAST of Tan0011332 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-13
Identity = 32/88 (36.36%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 4  KCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMRVKF 63
          K +FIR+GG WE++T +Y GG++ GI+VP+ +T++E ++ ++ +  +D++ YD+ +RV +
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 NTDSPSPPMYISNDRDVVFFMNHPNVKK 92
          +    SPPM++++D D+ F +    V K
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSK 92

BLAST of Tan0011332 vs. NCBI nr
Match: KAA0056639.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 1  MDNKCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR 60
          M N  I +RYGG W+E    Y GG + GIVV   IT ++ + E+YN+T +D   +DI++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61 --VKFNTDSPSPPMYISNDRDVVFFMNHPN 89
             +   ++ +PP  +SNDRD+ F++   N
Sbjct: 61 CIYEIKVENEAPPFELSNDRDLKFYILSEN 90

BLAST of Tan0011332 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 1   MDNKCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR 60
           M  KC+ I Y G W+E+   Y GG++ GIVVP+ + +EE ++ IY +  I    +D+ MR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VKFNTDSPSPPMYI 75
           VK+  D  +PP YI
Sbjct: 293 VKYKLDFEAPPHYI 306

BLAST of Tan0011332 vs. NCBI nr
Match: TYK07864.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-09
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR--VKF 65
          I +R+GG W+E    Y GG + GIVVP  IT+++ +SE+Y++  +D   +DI++R   + 
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 NTDSPSPPMYISNDRDVVFFMNHPN 89
            +  +PP  +SNDRD+ F++   N
Sbjct: 66 KGEKKAPPFELSNDRDLKFYILSEN 90

BLAST of Tan0011332 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 32/88 (36.36%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 4  KCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMRVKF 63
          K +FIR+GG WE++T +Y GG++ GI+VP+ +T++E ++ ++ +  +D++ YD+ +RV +
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 NTDSPSPPMYISNDRDVVFFMNHPNVKK 92
          +    SPPM++++D D+ F +    V K
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSK 92

BLAST of Tan0011332 vs. ExPASy TrEMBL
Match: A0A5A7UT04 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001610 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 1  MDNKCIFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR 60
          M N  I +RYGG W+E    Y GG + GIVV   IT ++ + E+YN+T +D   +DI++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61 --VKFNTDSPSPPMYISNDRDVVFFMNHPN 89
             +   ++ +PP  +SNDRD+ F++   N
Sbjct: 61 CIYEIKVENEAPPFELSNDRDLKFYILSEN 90

BLAST of Tan0011332 vs. ExPASy TrEMBL
Match: A0A5D3C9E9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00080 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR--VKF 65
          I +R+GG W+E    Y GG + GIVVP  IT+++ +SE+Y++  +D   +DI++R   + 
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 NTDSPSPPMYISNDRDVVFFMNHPN 89
            +  +PP  +SNDRD+ F++   N
Sbjct: 66 KGEKKAPPFELSNDRDLKFYILSEN 90

BLAST of Tan0011332 vs. ExPASy TrEMBL
Match: A0A5A7TQS3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00270 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR--VKF 65
          I +R+GG W+E+   Y GG + GIVVP  IT ++ +SE+Y++  +D   +DI++R   + 
Sbjct: 6  ILVRHGGAWDEERRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 NTDSPSPPMYISNDRDVVFFMNHPN 89
            +  +PP  +SNDRD+ F++   N
Sbjct: 66 KGEKEAPPFELSNDRDLKFYILSEN 90

BLAST of Tan0011332 vs. ExPASy TrEMBL
Match: A0A5A7UB55 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001530 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.8e-09
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYTGGQMTGIVVPVMITFEEFRSEIYNVTLIDEHAYDIEMR--VKF 65
          I +R+GG W+E    Y GG + GIVVP  IT ++ +SE+Y++  +D   +DI++R   K 
Sbjct: 6  ILVRHGGEWDEGQRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYKI 65

Query: 66 NTDSPSPPMYISNDRDVVFFMNHPN 89
            +  +PP  +SNDRD+ F++   N
Sbjct: 66 KGEKEAPPFELSNDRDLKFYILSEN 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038888098.14.3e-1433.54uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_022154925.12.8e-1336.36uncharacterized protein LOC111022071 [Momordica charantia][more]
KAA0056639.13.7e-1038.89MuDRA-like transposase [Cucumis melo var. makuwa][more]
XP_038902319.11.9e-0941.89trichohyalin-like [Benincasa hispida][more]
TYK07864.14.1e-0937.65MuDRA-like transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1DL081.3e-1336.36uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7UT041.8e-1038.89MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5D3C9E92.0e-0937.65MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7TQS34.5e-0937.65MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A5A7UB555.8e-0938.82MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0011332.1Tan0011332.1mRNA