Tan0011282 (gene) Snake gourd v1

Overview


Name	Tan0011282
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG09: 55969816 .. 55970406 (+)
RNA-Seq Expression	Tan0011282
Synteny	Tan0011282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTCAATAATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATATGATTCTAGTTGTTGACGACCTTCGATTCGTACTAACTGAGGAATGTCCTCAGATTCTTGCTCGTAACGCTCCTCAATCTGTTAAAGAGGCGTACGACCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAATTCACTGCAGGAAATGTTTGGACAACCGTCTGGACAGATTCGGCACGAATCCCTCAAATATGTTTATAACTCTCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTAAGATGAATGGAGCGGTCATCGACGAGCAGAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACTCGACTACTCTCCTTAATGAACTACTGAGACTTTCCGGTCTCTTATGA

mRNA sequence

ATGTCGTCCTCAATAATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATATGATTCTAGTTGTTGACGACCTTCGATTCGTACTAACTGAGGAATGTCCTCAGATTCTTGCTCGTAACGCTCCTCAATCTGTTAAAGAGGCGTACGACCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAATTCACTGCAGGAAATGTTTGGACAACCGTCTGGACAGATTCGGCACGAATCCCTCAAATATGTTTATAACTCTCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTAAGATGAATGGAGCGGTCATCGACGAGCAGAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACTCGACTACTCTCCTTAATGAACTACTGAGACTTTCCGGTCTCTTATGA

Coding sequence (CDS)

ATGTCGTCCTCAATAATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATATGATTCTAGTTGTTGACGACCTTCGATTCGTACTAACTGAGGAATGTCCTCAGATTCTTGCTCGTAACGCTCCTCAATCTGTTAAAGAGGCGTACGACCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAATTCACTGCAGGAAATGTTTGGACAACCGTCTGGACAGATTCGGCACGAATCCCTCAAATATGTTTATAACTCTCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTAAGATGAATGGAGCGGTCATCGACGAGCAGAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACTCGACTACTCTCCTTAATGAACTACTGAGACTTTCCGGTCTCTTATGA

Protein sequence

MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

Homology

[Close]

BLAST of Tan0011282 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-70
Identity = 134/196 (68.37%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+  WK+ +N +L++DDLRFVL EECPQ+ A NA Q+V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYAAWKNTINTVLIIDDLRFVLVEECPQVPAANATQTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.2e-71
Identity = 134/196 (68.37%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+  WK+ +N +L++DDLRFVL EECPQ+ A NA Q+V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYAAWKNTINTVLIIDDLRFVLVEECPQVPAANATQTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 133/196 (67.86%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYD 60
           M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIRHESLKYVYNS 120
           RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQEMFGQ S QI+H++LKY+YN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEY 180
           RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NSTTLLNELLRLSGLL 197
             TTLLNEL     L+
Sbjct: 181 TLTTLLNELQTFESLM 196

[Close]

BLAST of Tan0011282 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 48.5 bits (114), Expect = 7.0e-06
Identity = 38/176 (21.59%), Postives = 78/176 (44.32%), Query Frame = 0


Query: 2   SSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDR 61
           SS   +++K  R  G+++  W S + + L    L +VL+E CP I +   P++      R
Sbjct: 186 SSHGFSVIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITR 245

Query: 62  -------WIKANDKAKVYILASVSEVLAKKH-EGMVSAREIMNSLQEMFGQPSGQIRHES 121
                  W++ +     +++ S+S+ L +++ +    A+E+ + L+ ++     + +   
Sbjct: 246 ADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQ 305

Query: 122 LKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQF 170
           ++     RM E   + E V       +     G  +DE   VS I+   P S+  F
Sbjct: 306 VRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGF 361

The following BLAST results are available for this feature:

BLAST of Tan0011282 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011282 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061339.1	1.7e-70	68.37	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	3.8e-70	67.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	3.8e-70	67.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	3.8e-70	67.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	3.8e-70	67.86	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0011282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6N0	8.2e-71	68.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]
A0A5A7SMH8	1.8e-70	67.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.8e-70	67.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	1.8e-70	67.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.8e-70	67.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0011282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	7.0e-06	21.59	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..190 e-value: 1.4E-16 score: 60.5
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..189
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011282.1	Tan0011282.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding