Tan0011278 (gene) Snake gourd v1

Overview


Name	Tan0011278
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	heavy metal-associated isoprenylated plant protein 39
Location	LG01: 2162932 .. 2164182 (+)
RNA-Seq Expression	Tan0011278
Synteny	Tan0011278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAACCATGATCGAGGTAGGGGAAGGATGGGAGGAGGAAGAAAGAAAAGGGAGCAGAGAGAAAAAAAGAAAAAGAAAGGTGTTTTTTATTTTAAAAATTAAGAAAATATTTTTTTAAATGAAAAATAAATGTCATATCAATATTCCATTAGTAATAAATGAAAAATGGATAGAGGGACTAAATGTTAAATTGTTGAATTTAGAAACTCGAGGAAAACTAAAGGTAAAGGTAAGATTGAAAGACAAAAAGATATGTTGCTCTAAAATTTGTCGTGGCAAAATTAAATAACACCCTCTATTTAGAGAGAGAGTTGAAATTGTGTTGCAATAGTAATAGTTGATTTCGTAAAATTAATAATCAATTAATTGAGAAAGTTGAAAGAAATTTGTAATATTAATGGATGGCTTTGTAAATTAATAAACCAATCAGCCGAGAGAAAGTTGAAAAGGGTTTATATTAAGATTAATATTTGTTTTTTTTTTTTTATAATTAATAATCTAATTACTAAGGGAGATATTAATTGCATAATTTAATGAGATTGTTGTGAGAGCTTCAGTTGAAAGATAATATAGATTAAAGAAATTTTTTTCCTGTCCACTGTAACATTAACATTAACAGTGGTAATTTTAAGCTAGCATAGTATAATCGTCAAGACATATGCATTTTGCATTAGAAAAAAACAATTTTTAACCTAATAATAATAATATTGCTCAATATAGGTTAAAAATGTGCATAGATAGCTCTCTCAATATAGGGTTTGAGAAGCTCTCTATCATTTCTTCATCATATGACTAAGACATTTCCCTTTTCATCTTCTTCATCTCCAAATTCTTTACTTCTCTCTTCCCATTTCTCTTTCTTTGATTTTTAGCAGAAGATTGTATTGAAGGTTCTAACAATGGCTGATCAAAAATCAAAAAAGAAAGCCATGGAAGCAGCTGCAGACATATTTGGTCCCTAAAGTCTTTTTTCTTTTCTTTTTGGTCATCTTCTATTTCTATTAGGTTTGGGAATTTTAATGTGATTTTGATCAACAGGGGTTGACTCCATTGCAGCTGATCTGAAGGAGCAGACAGTAACAGCAATAGGATCAATGGATGTAGTTGCATTGGTGAAGAAGATGAATCAAGTTGGGAAAGTGGAGATTGTATCAATTGGTCCAGCTAATGAGGAGAAGAAGGATAAAAACAAATAACAGAACAAAGATGACAAAACATGACTTCTATCAGAAAAAAAAAAGGTCCAGACC

mRNA sequence

CGACAACCATGATCGAGGTAGGGGAAGGATGGGAGGAGGAAGAAAGAAAAGGGAGCAGAGAGAAAAAAAGAAAAAGAAAGGGGTTGACTCCATTGCAGCTGATCTGAAGGAGCAGACAGTAACAGCAATAGGATCAATGGATGTAGTTGCATTGGTGAAGAAGATGAATCAAGTTGGGAAAGTGGAGATTGTATCAATTGGTCCAGCTAATGAGGAGAAGAAGGATAAAAACAAATAACAGAACAAAGATGACAAAACATGACTTCTATCAGAAAAAAAAAAGGTCCAGACC

Coding sequence (CDS)

ATGGGAGGAGGAAGAAAGAAAAGGGAGCAGAGAGAAAAAAAGAAAAAGAAAGGGGTTGACTCCATTGCAGCTGATCTGAAGGAGCAGACAGTAACAGCAATAGGATCAATGGATGTAGTTGCATTGGTGAAGAAGATGAATCAAGTTGGGAAAGTGGAGATTGTATCAATTGGTCCAGCTAATGAGGAGAAGAAGGATAAAAACAAATAA

Protein sequence

MGGGRKKREQREKKKKKGVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK

Homology

[Close]

BLAST of Tan0011278 vs. NCBI nr
Match: KAF3966563.1 (hypothetical protein CMV_009341 [Castanea mollissima])

HSP 1 Score: 73.9 bits (180), Expect = 5.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          G+DSIAADLK+Q +T +GSMD VA+VKK+ +VGKVEIVS+GPA EEKK++ K
Sbjct: 30 GIDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVEIVSVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. NCBI nr
Match: XP_030935571.1 (heavy metal-associated isoprenylated plant protein 39 isoform X1 [Quercus lobata])

HSP 1 Score: 73.9 bits (180), Expect = 5.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          G+DSIAADLKEQ +T +GSMD VA+VKK+ +VGKV+IVS+GPA EEKK++ K
Sbjct: 30 GIDSIAADLKEQKLTVVGSMDAVAIVKKLKKVGKVDIVSVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. NCBI nr
Match: XP_030935572.1 (heavy metal-associated isoprenylated plant protein 39 isoform X2 [Quercus lobata])

HSP 1 Score: 73.9 bits (180), Expect = 5.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          G+DSIAADLKEQ +T +GSMD VA+VKK+ +VGKV+IVS+GPA EEKK++ K
Sbjct: 29 GIDSIAADLKEQKLTVVGSMDAVAIVKKLKKVGKVDIVSVGPAKEEKKEEKK 80

[Close]

BLAST of Tan0011278 vs. NCBI nr
Match: XP_023889553.1 (heavy metal-associated isoprenylated plant protein 39 [Quercus suber])

HSP 1 Score: 73.9 bits (180), Expect = 5.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          G+DSIAADLKEQ +T +GSMD VA+VKK+ +VGKV+IVS+GPA EEKK++ K
Sbjct: 30 GIDSIAADLKEQKLTVVGSMDAVAIVKKLKKVGKVDIVSVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. NCBI nr
Match: XP_039044672.1 (heavy metal-associated isoprenylated plant protein 39-like isoform X1 [Hibiscus syriacus])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          GVDSIAADLK+Q +T IG+MD VALVKK+ +VGKV+I+SIGPA EEKK++ K
Sbjct: 31 GVDSIAADLKDQKLTVIGAMDAVALVKKLKKVGKVDIISIGPAKEEKKEEKK 82

[Close]

BLAST of Tan0011278 vs. ExPASy TrEMBL
Match: A0A7N2MIL9 (HMA domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          G+DSIAADLKEQ +T +GSMD VA+VKK+ +VGKV+IVS+GPA EEKK++ K
Sbjct: 30 GIDSIAADLKEQKLTVVGSMDAVAIVKKLKKVGKVDIVSVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. ExPASy TrEMBL
Match: A0A6A2X9T0 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112857pilonHSYRG00155 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          GVDSIAADLK+Q +T IG+MD VALVKK+ +VGKV+I+SIGPA EEKK++ K
Sbjct: 30 GVDSIAADLKDQKLTVIGAMDAVALVKKLKKVGKVDIISIGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. ExPASy TrEMBL
Match: A0A7J7CAH9 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW19G00763 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          GVD+IAADLKEQ +T IGSMD VA+VKK+ +VGKV+IVS+GPA EEKK++ K
Sbjct: 30 GVDAIAADLKEQKLTVIGSMDAVAVVKKLKKVGKVDIVSVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. ExPASy TrEMBL
Match: A0A0A0LFC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914040 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          GVDSIAADLK+Q +T IGSMD VA+VKK+ +VGKV+I+S+GPA EEKK++ K
Sbjct: 5  GVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKK 56

[Close]

BLAST of Tan0011278 vs. ExPASy TrEMBL
Match: A0A6J1E094 (heavy metal-associated isoprenylated plant protein 39 OS=Momordica charantia OX=3673 GN=LOC111025962 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          GVDSIAADLK+Q +T IGSMD VA+VKK+ +VGKV+I+S+GPA EEKK++ K
Sbjct: 30 GVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. TAIR 10
Match: AT5G23760.1 (Copper transport protein family )

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-12
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKVEIVSIGPANEEKKDKNK 70
          GVDSIAAD+K+Q +T IG MD VA+VKK+ +VGKV+++S+GPA EEKK++ K
Sbjct: 30 GVDSIAADMKDQKLTVIGLMDAVAVVKKLKKVGKVDLISVGPAKEEKKEEKK 81

[Close]

BLAST of Tan0011278 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKV-EIVSIGPANEEKKDKNK 70
          G+DSIA D+KE+ +T IG++D V +V K+ +   + +IV +GPA E +K+K +
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKE 80

[Close]

BLAST of Tan0011278 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 18 GVDSIAADLKEQTVTAIGSMDVVALVKKMNQVGKV-EIVSIGPANEEKKDKNK 70
          G+DSIA D+KE+ +T IG++D V +V K+ +   + +IV +GPA E +K+K +
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKE 80

The following BLAST results are available for this feature:

BLAST of Tan0011278 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011278 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3966563.1	5.9e-10	69.23	hypothetical protein CMV_009341 [Castanea mollissima]	[more]
XP_030935571.1	5.9e-10	69.23	heavy metal-associated isoprenylated plant protein 39 isoform X1 [Quercus lobata...	[more]
XP_030935572.1	5.9e-10	69.23	heavy metal-associated isoprenylated plant protein 39 isoform X2 [Quercus lobata...	[more]
XP_023889553.1	5.9e-10	69.23	heavy metal-associated isoprenylated plant protein 39 [Quercus suber]	[more]
XP_039044672.1	1.0e-09	71.15	heavy metal-associated isoprenylated plant protein 39-like isoform X1 [Hibiscus ...	[more]

BLAST of Tan0011278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2MIL9	2.9e-10	69.23	HMA domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A2X9T0	4.9e-10	71.15	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112857pilon...	[more]
A0A7J7CAH9	4.9e-10	71.15	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW19G00763 ...	[more]
A0A0A0LFC9	4.9e-10	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914040 PE=4 SV=1	[more]
A0A6J1E094	4.9e-10	69.23	heavy metal-associated isoprenylated plant protein 39 OS=Momordica charantia OX=...	[more]

BLAST of Tan0011278 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23760.1	1.8e-12	63.46	Copper transport protein family	[more]
AT1G01490.1	1.4e-04	43.40	Heavy metal transport/detoxification superfamily protein	[more]
AT1G01490.2	1.4e-04	43.40	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR45811:SF22	LATE BLIGHT RESISTANCE PROTEIN HOMOLOG R1B-12 ISOFORM X1-RELATED	coord: 17..69
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 17..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011278.1	Tan0011278.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding