Tan0011275 (gene) Snake gourd v1

Overview


Name	Tan0011275
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 71389053 .. 71389490 (+)
RNA-Seq Expression	Tan0011275
Synteny	Tan0011275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAACTTCCCATAATTTTTCTTTTGCTTCTTTGCATCATTATTGTACTAAGTTTCTTCCTCTTCTTCTTCTTCTATTTCTCATCCTCTTCGGTGAGTTCCAAGCATCAAAACTTCTTCCTCTACTTGTATGAAATCATTCGTGTAGTGAAATCGAGTCATACGTTGGTGTTTCTCGCATTTAACGCCATCATGTTCATCCTCTTCGGCGAGAAGTTTAAGCGGTCACCGAGTGAAGAAGAACGGGTAGAGAGTTATAAAGATTATTGTAGATGTGACGATGAATTGATTACTCGTGAAATTTGTGTTTATGATAATTGTGATGAAGACTGTGAAGAAGGGCTTCAAGATGATTTGGAGAAGAGGGCGCAAGAGTTTATTGACATGATGAACTCTTTTTGGAGGGAAGAATTGGTTTGTGATAGGTTTCTATAG

mRNA sequence

ATGAAGAAACTTCCCATAATTTTTCTTTTGCTTCTTTGCATCATTATTGTACTAAGTTTCTTCCTCTTCTTCTTCTTCTATTTCTCATCCTCTTCGGTGAGTTCCAAGCATCAAAACTTCTTCCTCTACTTGTATGAAATCATTCGTGTAGTGAAATCGAGTCATACGTTGGTGTTTCTCGCATTTAACGCCATCATGTTCATCCTCTTCGGCGAGAAGTTTAAGCGGTCACCGAGTGAAGAAGAACGGGTAGAGAGTTATAAAGATTATTGTAGATGTGACGATGAATTGATTACTCGTGAAATTTGTGTTTATGATAATTGTGATGAAGACTGTGAAGAAGGGCTTCAAGATGATTTGGAGAAGAGGGCGCAAGAGTTTATTGACATGATGAACTCTTTTTGGAGGGAAGAATTGGTTTGTGATAGGTTTCTATAG

Coding sequence (CDS)

ATGAAGAAACTTCCCATAATTTTTCTTTTGCTTCTTTGCATCATTATTGTACTAAGTTTCTTCCTCTTCTTCTTCTTCTATTTCTCATCCTCTTCGGTGAGTTCCAAGCATCAAAACTTCTTCCTCTACTTGTATGAAATCATTCGTGTAGTGAAATCGAGTCATACGTTGGTGTTTCTCGCATTTAACGCCATCATGTTCATCCTCTTCGGCGAGAAGTTTAAGCGGTCACCGAGTGAAGAAGAACGGGTAGAGAGTTATAAAGATTATTGTAGATGTGACGATGAATTGATTACTCGTGAAATTTGTGTTTATGATAATTGTGATGAAGACTGTGAAGAAGGGCTTCAAGATGATTTGGAGAAGAGGGCGCAAGAGTTTATTGACATGATGAACTCTTTTTGGAGGGAAGAATTGGTTTGTGATAGGTTTCTATAG

Protein sequence

MKKLPIIFLLLLCIIIVLSFFLFFFFYFSSSSVSSKHQNFFLYLYEIIRVVKSSHTLVFLAFNAIMFILFGEKFKRSPSEEERVESYKDYCRCDDELITREICVYDNCDEDCEEGLQDDLEKRAQEFIDMMNSFWREELVCDRFL

Homology

[Close]

BLAST of Tan0011275 vs. NCBI nr
Match: KAE8646698.1 (hypothetical protein Csa_005140 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-26
Identity = 90/151 (59.60%), Postives = 104/151 (68.87%), Query Frame = 0


Query: 1   MKKLPIIFLLLLCIIIVLSFFLFFFFYFSSSSVSSKHQNFFLYLYEIIRVVKSSHTLVFL 60
           MKKL +IF   LCIIIVLSFFLFF        VS  H+N      EI+ VVKSS   +FL
Sbjct: 1   MKKLQVIF---LCIIIVLSFFLFFM-------VSFTHRNVVNQSMEIVLVVKSSRASIFL 60

Query: 61  AFNAIMFILFGEKFKRSPSEEERVESYKDYCR-CDD--ELITRE-ICVYDNCDED-CEEG 120
           A N I+ ILFG+K K+  S+EE  E  KD C  C D  EL + E ICV D+CDED CEEG
Sbjct: 61  ASNTIILILFGKKLKQLSSKEEEEERCKDCCSGCSDDHELNSYEMICVEDSCDEDYCEEG 120

Query: 121 -LQDDLEKRAQEFIDMMNSFWREELVCDRFL 146
            +QDDLEK+AQEFIDMMN+FWREEL+ DRFL
Sbjct: 121 MIQDDLEKKAQEFIDMMNAFWREELIHDRFL 141

[Close]

BLAST of Tan0011275 vs. NCBI nr
Match: KAA0040002.1 (hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK24499.1 hypothetical protein E5676_scaffold266G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.2e-26
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 33  VSSKHQNFFLYLYEIIRVVKSSHTLVFLAFNAIMFILFGEKFKRSPSEEERVESY-KDYC 92
           VSSKH+NF + L EII VVKSS   +FLA N I+ ILF EK KR  S+E+  ES+ KD+C
Sbjct: 2   VSSKHRNFIIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSKEK--ESWCKDFC 61

Query: 93  --RCDDELITRE-ICVYDNCDEDCEEGLQDDLEKRAQEFIDMMNSFWREELVCDRFL 146
               D EL + E ICV D+CDE CEEG+QDDLEK+AQEFIDMMN+FWREEL+ DRFL
Sbjct: 62  SRHSDGELNSEEIICVEDSCDEGCEEGIQDDLEKKAQEFIDMMNAFWREELIHDRFL 116

[Close]

BLAST of Tan0011275 vs. NCBI nr
Match: KAG6593708.1 (hypothetical protein SDJN03_13184, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 66  MFILFGEKFKRSPSEE----ERVESYKDYCRCDDELITREICVYDNCDEDCEEGLQDDLE 125
           MFILFGEKFK+SPSEE    E+VESY+DY R DDELIT  I VYD+CDED +E  QDD E
Sbjct: 1   MFILFGEKFKQSPSEEKGIGEQVESYEDYDRRDDELITHNIYVYDSCDEDGDERFQDDFE 60

Query: 126 KRAQEFIDMMNSFWREELVCDRFL 146
           K+AQEFI+MM SFWREELVCDRFL
Sbjct: 61  KKAQEFIEMMYSFWREELVCDRFL 84

[Close]

BLAST of Tan0011275 vs. ExPASy TrEMBL
Match: A0A5A7T9A6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00410 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 33  VSSKHQNFFLYLYEIIRVVKSSHTLVFLAFNAIMFILFGEKFKRSPSEEERVESY-KDYC 92
           VSSKH+NF + L EII VVKSS   +FLA N I+ ILF EK KR  S+E+  ES+ KD+C
Sbjct: 2   VSSKHRNFIIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSKEK--ESWCKDFC 61

Query: 93  --RCDDELITRE-ICVYDNCDEDCEEGLQDDLEKRAQEFIDMMNSFWREELVCDRFL 146
               D EL + E ICV D+CDE CEEG+QDDLEK+AQEFIDMMN+FWREEL+ DRFL
Sbjct: 62  SRHSDGELNSEEIICVEDSCDEGCEEGIQDDLEKKAQEFIDMMNAFWREELIHDRFL 116

[Close]

BLAST of Tan0011275 vs. ExPASy TrEMBL
Match: A0A0A0K9S4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077350 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 71/119 (59.66%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 33  VSSKHQNFFLYLYEIIRVVKSSHTLVFLAFNAIMFILFGEKFKRSPSEEERVESYKDYCR 92
           VS  H+N      EI+ VVKSS   +FLA N I+ ILFG+K K+  S+EE  E  KD C 
Sbjct: 2   VSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSKEEEEERCKDCCS 61

Query: 93  -CDD--ELITRE-ICVYDNCDED-CEEG-LQDDLEKRAQEFIDMMNSFWREELVCDRFL 146
            C D  EL + E ICV D+CDED CEEG +QDDLEK+AQEFIDMMN+FWREEL+ DRFL
Sbjct: 62  GCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIHDRFL 120

[Close]

BLAST of Tan0011275 vs. ExPASy TrEMBL
Match: A0A7N2MFN6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04
Identity = 59/159 (37.11%), Postives = 77/159 (48.43%), Query Frame = 0


Query: 1   MKKLPIIFLLLLCIIIVLSFFLFFFFYFSSSSVSSKHQNFFLYLYEIIRVVKSSHTLVFL 60
           MK    I  LLLC+II+L  F+F    FS S  +SK  N FL  YE I + KSS   VF 
Sbjct: 1   MKIASNIPALLLCLIILLILFIF----FSLSLSASKQHNPFLSTYEFIFLKKSSRGAVFF 60

Query: 61  AFNAIMFILFGEKFKRSPSEEERVESYK-DYCRCDDELITREICVYDNCDE---DCEEGL 120
            FN I+  +    FK S  + +   S+       DD+    +   YD+ DE   D  EG 
Sbjct: 61  VFNVIVITICRGSFKPSDGDFDYFLSFPLTVYEFDDDTKDED---YDDSDEYHGDDGEGS 120

Query: 121 QD----------DLEKRAQEFIDMMNSFWREELVCDRFL 146
            D          DLE R ++FI   +  WREEL+ +RFL
Sbjct: 121 DDDVDSNDEQAEDLETRIEDFIAKGHRQWREELIYERFL 152

The following BLAST results are available for this feature:

BLAST of Tan0011275 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011275 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646698.1	3.2e-26	59.60	hypothetical protein Csa_005140 [Cucumis sativus]	[more]
KAA0040002.1	4.2e-26	64.10	hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK244...	[more]
KAG6593708.1	1.8e-24	75.00	hypothetical protein SDJN03_13184, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0011275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9A6	2.1e-26	64.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K9S4	3.1e-22	59.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077350 PE=4 SV=1	[more]
A0A7N2MFN6	8.4e-04	37.11	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Tan0011275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011275.1	Tan0011275.1	mRNA