Tan0011245 (gene) Snake gourd v1

Overview


Name	Tan0011245
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG10: 32347742 .. 32348008 (-)
RNA-Seq Expression	Tan0011245
Synteny	Tan0011245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACAGCAAAGGAGATCATGGGATCATTACAGGCGATGTTTGGACAACCGTCCTCATCGGTCCATTATGATGCTGTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATGTCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAGATGAGAGAAGTCAGGTAACTTTTATTATGGAATCTCTTCCAAAGAGTTTCTGCCATTCGCACAAATGCGGTAATGAATAA

mRNA sequence

ATGGTCACAGCAAAGGAGATCATGGGATCATTACAGGCGATGTTTGGACAACCGTCCTCATCGGTCCATTATGATGCTGTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATGTCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAGATGAGAGAAGTCAGGTAACTTTTATTATGGAATCTCTTCCAAAGAGTTTCTGCCATTCGCACAAATGCGGTAATGAATAA

Coding sequence (CDS)

ATGGTCACAGCAAAGGAGATCATGGGATCATTACAGGCGATGTTTGGACAACCGTCCTCATCGGTCCATTATGATGCTGTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATGTCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAGATGAGAGAAGTCAGGTAACTTTTATTATGGAATCTCTTCCAAAGAGTTTCTGCCATTCGCACAAATGCGGTAATGAATAA

Protein sequence

MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGAVIDERSQVTFIMESLPKSFCHSHKCGNE

Homology

[Close]

BLAST of Tan0011245 vs. NCBI nr
Match: XP_038876370.1 (uncharacterized protein LOC120068812, partial [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           MVTAKEIM SLQA+FGQPSSS  +DA+K+VYN RMKEG +VREHVLDMM HFN+ EVN A
Sbjct: 88  MVTAKEIMNSLQALFGQPSSSAMHDAIKWVYNCRMKEGPNVREHVLDMMVHFNITEVNRA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           V++E+SQV FIMESLPKSF
Sbjct: 148 VMNEKSQVGFIMESLPKSF 166

[Close]

BLAST of Tan0011245 vs. NCBI nr
Match: XP_038880476.1 (uncharacterized protein LOC120072136 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 6.3e-25
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           MV AKEIM SLQA+FGQPSSS  +DA+KYVYN RMKEG +VREHVLDMM HFN+ EVNGA
Sbjct: 88  MVMAKEIMDSLQALFGQPSSSAMHDAIKYVYNFRMKEGTNVREHVLDMMVHFNIVEVNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           V++E++Q  FIMESLPKSF
Sbjct: 148 VMNEKNQGGFIMESLPKSF 166

[Close]

BLAST of Tan0011245 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 148 VIDEASQVSFILESLPESF 166

[Close]

BLAST of Tan0011245 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 147 VIDEASQVSFILESLPESF 165

[Close]

BLAST of Tan0011245 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 148 VIDEASQVSFILESLPESF 166

[Close]

BLAST of Tan0011245 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 148 VIDEASQVSFILESLPESF 166

[Close]

BLAST of Tan0011245 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 148 VIDEASQVSFILESLPESF 166

[Close]

BLAST of Tan0011245 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 265 VIDEASQVSFILESLPESF 283

[Close]

BLAST of Tan0011245 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 148 VIDEASQVSFILESLPESF 166

[Close]

BLAST of Tan0011245 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDAVKYVYNSRMKEGASVREHVLDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EGASVREHVL+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDERSQVTFIMESLPKSF 80
           VIDE SQV+FI+ESLP+SF
Sbjct: 148 VIDEASQVSFILESLPESF 166

The following BLAST results are available for this feature:

BLAST of Tan0011245 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876370.1	2.2e-25	77.22	uncharacterized protein LOC120068812, partial [Benincasa hispida]	[more]
XP_038880476.1	6.3e-25	75.95	uncharacterized protein LOC120072136 [Benincasa hispida]	[more]
KAA0044955.1	3.1e-24	73.42	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	3.1e-24	73.42	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	3.1e-24	73.42	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0011245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.5e-24	73.42	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.5e-24	73.42	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.5e-24	73.42	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.5e-24	73.42	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.5e-24	73.42	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0011245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..81 e-value: 2.4E-10 score: 40.3
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011245.1	Tan0011245.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding