Tan0011165 (gene) Snake gourd v1

Overview


Name	Tan0011165
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RADIALIS-like 1
Location	LG02: 7788665 .. 7790650 (-)
RNA-Seq Expression	Tan0011165
Synteny	Tan0011165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCTTCTCATGGCTCTGGTACTTGGACTGCACAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACACCTGACCGATGGTTGAATGTTGCAAAAGCTGTTGGTGGAAAAACTGCTGAGGAGGTCAAAAGGCACTATGAGCTTCTTGTGGAGGATGTCAAGTTTATTGAGTCGGGTCGAGTTCCCTACCCCTATCGAAACTCTGGCGGTAGTAACTAAGGTAAAACGATGACTCGTGATAAAAAGATTATGCAAAAAGAATGGTGATAATGTCGATAGGACGAACTCCTAATCTTTCTGATGTGATGCATTTTTAATGGCGGCTTAAATATTTTAATAGAGTCTACTTATCTATTCATTGCAATGGAAATAGAACGACAAAAATACATCACGTAAGAAAATACATTACATAAGAAAATCAGTAGAATATCCTACTAACTGGTGTGCAGGCGAGCATTATTCTATAGTTAATACGTTCTCCTATTTCCTATAACTACTCATGCATGTCTAAGTTTCATTCATGAAAAACAAGCCTTCGTATTCATATTTTTAGAGTAGAATTTTCTATATCAGCACGTCATCTTTGAAACTCATAATCTTCCTCAATCGATAGTTTTTATTTTAACTAGAGAAGACACGACTGAAAATATAATAAATTAAATAATTATACTTATTATATTATCGATAATTAAGTTTGAGCTTTTTCAGGTCTAATAGTAATGTACGTAACGAAGTAAATTAGGAGGTCAAACGTTCGTCCCGTTATATAAATGGTTGGTCATGTTTTTAATTGATTTAGTTGAGTTCAAATGGGGTACCTAATAGAGAGAAACCCTAGCCAAACCATTTGCTTTTAAATGATGTCTTAGCTAGCTTGGAAACTGATGTCATTTTTATTATTATAGAGTTTGTATGTATATGAGCAGAGGAATGTCATTATCGATGAATAGCGGCCCCCCATTTGGTCTGGATTCTTCTGTGAATTAATGGCTACATGTTTCAATAAAAAAACAATATATAACTCATCGTCTTGTAAGCTTTTTCAAAGCCACCCTTTTCTTCTTGTTCTTTGAAACTAAAGCTGCGCCAATGCCTCAGCATTGGCTCTTCAGACCCCAACAAGAACAGCATTTTTGTTTTATGTATATATCTTTTTAGGGATAATATTTTATCATATACATCAACAATATCTTCTTATTATTCATGTTGAATTTTAACCCCTTTTTTTTGTTTTTAATTTCAGGTTGAGAAATATGAAGCTCCATTGAGCTAGTTTGATGGTGAAGTAATTGAAGAATAAAAGGATCGAAGAAAGAACGATCTGCTAATTTGAAGAGTATAATACATATATGTCTCATTTGCATTGTGTTTTCGTGTTATTTAATATCGATTTGTGTTAAGCTTTAAGTTGTTTATTAATTCCCTGGATTGTACATCAACTTTCGATTTTGGAAGGAAAATATCGAAAGAATTGTTCCTTCCTCTCGTGAGGTTAATGGATATTTATGTCATTTTATAATGAAATCTTTTTGCAATATGATAATGTTGATTTTTAATCAATTTTTTTTATCTTTTGAACAAGGAAGCTTATCCAGTTGATATCATATATATCTATGATTAATCTATTTTATTTCTGTGTTTTTTCACTTTTTTTTATTAGACTAGTTTATACACATTTTTCGTATTTATTTCGAAATAATCGCTAAGATTACTTAAGTTGAAAAAGTTTTAAGACATGTAATATCTTTAAAATTATTTGAATTTTTATAACTTAATTAAGAAATATTTGAATTAATAACTTTTTACAACGTCGATGTTGTTAAAAGTGTTAAAGTAGTTTTTTTTTATAAAGGATGATCGAAGAATTAATATTTAATTGAATCTTCTTGGTTAAGATTCATAGATAAAATACATTTAATTATAGTAAATTTTCAATTAATTATGAAGAAAATTCAAGATTAA

mRNA sequence

ATGGCTTCAATGTCTTCTCATGGCTCTGGTACTTGGACTGCACAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACACCTGACCGATGGTTGAATGTTGCAAAAGCTGTTGGTGGAAAAACTGCTGAGGAGGTCAAAAGGCACTATGAGCTTCTTGTGGAGGATGTCAAGTTTATTGAGTCGGGTCGAGTTCCCTACCCCTATCGAAACTCTGGCGGTAATTAA

Coding sequence (CDS)

ATGGCTTCAATGTCTTCTCATGGCTCTGGTACTTGGACTGCACAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACACCTGACCGATGGTTGAATGTTGCAAAAGCTGTTGGTGGAAAAACTGCTGAGGAGGTCAAAAGGCACTATGAGCTTCTTGTGGAGGATGTCAAGTTTATTGAGTCGGGTCGAGTTCCCTACCCCTATCGAAACTCTGGCGGTAATTAA

Protein sequence

MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGGN

Homology

[Close]

BLAST of Tan0011165 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 2  ASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDV 61
          +SMSS  SG+WTA+QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSGG 79
            IE+G VP+P YR SGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Tan0011165 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-26
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 3  SMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVK 62
          SMSS+GSG+WT +QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y+LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP-YRNSGGN 80
           IE+G VP+P Y+ + GN
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Tan0011165 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.1e-26
Identity = 54/77 (70.13%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 5  SSHGSG-TWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKF 64
          S+ GSG  W+A++NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HYE+LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGRVPYP-YRNSGGN 80
          IESG+VP+P YR +GGN
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of Tan0011165 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.7e-25
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S   S +WT ++NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHYELL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGRVPYP-YRNSGGN 80
          V  IESGR P+P YR++G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Tan0011165 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYP 73
          +  IE+GRVP P
Sbjct: 61 LINIETGRVPLP 72

[Close]

BLAST of Tan0011165 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGG 79
          VKFIESG+VP+PYR SGG
Sbjct: 61 VKFIESGQVPFPYRTSGG 78

[Close]

BLAST of Tan0011165 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGG 79
          VKFIESG+VP+PYR SGG
Sbjct: 61 VKFIESGQVPFPYRTSGG 78

[Close]

BLAST of Tan0011165 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 7.4e-33
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSG 78
          VKFIESG+VP+PYR SG
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Tan0011165 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 7.4e-33
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSG 78
          VKFIESG+VP+PYR SG
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Tan0011165 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSG+WTA+QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HY LLVED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VKFIESGRVPYPYRNS-GGN 80
          VKFIESG+VP+PYR+S GGN
Sbjct: 61 VKFIESGQVPFPYRSSRGGN 80

[Close]

BLAST of Tan0011165 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGG 79
          VKFIESG+VP+PYR SGG
Sbjct: 61 VKFIESGQVPFPYRTSGG 78

[Close]

BLAST of Tan0011165 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.6e-33
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSG 78
          VKFIESG+VP+PYR SG
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Tan0011165 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.6e-33
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSG 78
          VKFIESG+VP+PYR SG
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Tan0011165 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGS  WTA+QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHYELLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGRVPYPYRNSGG 79
          VKFIESG+V +PYR SGG
Sbjct: 61 VKFIESGQVSFPYRTSGG 78

[Close]

BLAST of Tan0011165 vs. ExPASy TrEMBL
Match: A0A6J1F548 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111440931 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MASMSSHGS +WTA+QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY+LLVED
Sbjct: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60

Query: 61 VKFIESGRVPYPYRNSGGN 80
          VKFIESGRVPYPYRNSG +
Sbjct: 61 VKFIESGRVPYPYRNSGAS 79

[Close]

BLAST of Tan0011165 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 123.2 bits (308), Expect = 9.0e-29
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 2  ASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDV 61
          +SMSS  SG+WTA+QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSGG 79
            IE+G VP+P YR SGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Tan0011165 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-27
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 3  SMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVK 62
          SMSS+GSG+WT +QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y+LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP-YRNSGGN 80
           IE+G VP+P Y+ + GN
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Tan0011165 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYP 73
          +  IE+GRVP P
Sbjct: 61 LINIETGRVPLP 72

[Close]

BLAST of Tan0011165 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYP 73
          +  IE+GRVP P
Sbjct: 61 LINIETGRVPLP 72

[Close]

BLAST of Tan0011165 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 104.0 bits (258), Expect = 5.7e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVED 60
          MAS S   S +WT++QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYP 73
          +  IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

The following BLAST results are available for this feature:

BLAST of Tan0011165 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	1.3e-27	74.36	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	3.1e-26	70.51	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	9.1e-26	70.13	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	7.7e-25	67.50	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	2.1e-22	70.83	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Tan0011165 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151125.2	2.6e-33	92.31	protein RADIALIS-like 1 [Cucumis sativus]	[more]
KAE8645641.1	2.6e-33	92.31	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
KAA0036150.1	7.4e-33	92.21	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	7.4e-33	92.21	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_038888369.1	2.8e-32	90.00	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of Tan0011165 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348	1.2e-33	92.31	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A5A7SYK4	3.6e-33	92.21	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	3.6e-33	92.21	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A6J1C385	2.3e-32	89.74	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A6J1F548	6.8e-32	86.08	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111440931 PE=4 SV=1	[more]

BLAST of Tan0011165 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	9.0e-29	74.36	RAD-like 1	[more]
AT2G21650.1	2.2e-27	70.51	Homeodomain-like superfamily protein	[more]
AT1G75250.1	1.5e-23	70.83	RAD-like 6	[more]
AT1G75250.2	1.5e-23	70.83	RAD-like 6	[more]
AT1G19510.1	5.7e-23	68.06	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 3.1E-8 score: 43.4
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.330165
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 1.71878E-7 score: 41.407
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 2.5E-24 score: 86.8
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..75
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..54 e-value: 1.3E-5 score: 25.3
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..75
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 9.967013
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011165.1	Tan0011165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity