Tan0011027 (gene) Snake gourd v1

Overview


Name	Tan0011027
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 1032719 .. 1033278 (+)
RNA-Seq Expression	Tan0011027
Synteny	Tan0011027

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTAACCCTCAACAGTTATATTTCTCTCTCAATCTCTCTGTTTTTGCTTCACTCAACCATATCCAGTTCTTCTGAAGAACTTACTGGGTAACTTTGGAATGGATCAAACATGGAGATTTGCAGGTGGTGGAGAAGATCAAGCTGAATCAGCAATGAAGGAAGAAAGAGAAGGGAAGAGGAATGAGAATCTGAAGAGTTCTATGATGGCAACTTGGGTTTCAATGGCAGTGGCAAGCATGATGGGAGGGCTTGTGTTTGGTTGGTGGGAGTTTCAGTTTCATTCAACAAATAGACAACTGTGGATGGTACCTTTTGGTCTTGTATTGATGATTGCACCCATTTTTGTTATGATGTCTGTTCTTATCTCTACTTTCTGCACTTCCATGGATCACAATTCTACTTGGCCAGTTCCATCATCAGATCATGTGATCCAACAATAATCTGTTGAAATTAGATGAAGATCTAGGTATATAAGGTTACTGTTCCATGAGAGTAATTCTTCCTTTTACTTCTTTTTAAAGCTTTTTTAGGTTATAAGATTGTAAATGTTTCCCCTA

mRNA sequence

TCCATTAACCCTCAACAGTTATATTTCTCTCTCAATCTCTCTGTTTTTGCTTCACTCAACCATATCCAGTTCTTCTGAAGAACTTACTGGGTAACTTTGGAATGGATCAAACATGGAGATTTGCAGGTGGTGGAGAAGATCAAGCTGAATCAGCAATGAAGGAAGAAAGAGAAGGGAAGAGGAATGAGAATCTGAAGAGTTCTATGATGGCAACTTGGGTTTCAATGGCAGTGGCAAGCATGATGGGAGGGCTTGTGTTTGGTTGGTGGGAGTTTCAGTTTCATTCAACAAATAGACAACTGTGGATGGTACCTTTTGGTCTTGTATTGATGATTGCACCCATTTTTGTTATGATGTCTGTTCTTATCTCTACTTTCTGCACTTCCATGGATCACAATTCTACTTGGCCAGTTCCATCATCAGATCATGTGATCCAACAATAATCTGTTGAAATTAGATGAAGATCTAGGTATATAAGGTTACTGTTCCATGAGAGTAATTCTTCCTTTTACTTCTTTTTAAAGCTTTTTTAGGTTATAAGATTGTAAATGTTTCCCCTA

Coding sequence (CDS)

ATGGATCAAACATGGAGATTTGCAGGTGGTGGAGAAGATCAAGCTGAATCAGCAATGAAGGAAGAAAGAGAAGGGAAGAGGAATGAGAATCTGAAGAGTTCTATGATGGCAACTTGGGTTTCAATGGCAGTGGCAAGCATGATGGGAGGGCTTGTGTTTGGTTGGTGGGAGTTTCAGTTTCATTCAACAAATAGACAACTGTGGATGGTACCTTTTGGTCTTGTATTGATGATTGCACCCATTTTTGTTATGATGTCTGTTCTTATCTCTACTTTCTGCACTTCCATGGATCACAATTCTACTTGGCCAGTTCCATCATCAGATCATGTGATCCAACAATAA

Protein sequence

MDQTWRFAGGGEDQAESAMKEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFGLVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDHVIQQ

Homology

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BLAST of Tan0011027 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_011278 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MDQTWRFAGGGEDQA----ESAMKEE-REGKRNENLKSSMMATWV-SMAVASMMGGLVFG 60
           MDQTWRFA GG+++A    ESAMKEE R+ KRN N+KS  +ATWV SM VA + GGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWEFQFHSTNRQLWMVPFGLVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDHVIQQ 114
           WW FQFH TNRQLWMVPF LVLMIAPIFVMMS+LIS FC SMD  +T   PSSDHVIQQ
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQ 119

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BLAST of Tan0011027 vs. NCBI nr
Match: KAG6582696.1 (hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23
Identity = 67/107 (62.62%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 3   QTWRFAGGGEDQA---ESAMKEEREGKRNENLKSSMMATW-VSMAVASMMGGLVFGWWEF 62
           +TW FAGGGE+     ESAMK        EN+KS  MATW VSMAV SM+GG+VFGWWEF
Sbjct: 4   KTWGFAGGGEEAGQPMESAMK--------ENMKSCKMATWVVSMAVTSMVGGVVFGWWEF 63

Query: 63  QFHSTNRQLWMVPFGLVLMIAPIFVMMSVLISTF------CTSMDHN 100
           +FH TNRQLWMVPFGL+LM  P+FV+MS+LIS F       TSMD N
Sbjct: 64  RFHPTNRQLWMVPFGLILMTTPMFVIMSLLISAFMDQPISMTSMDQN 102

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BLAST of Tan0011027 vs. NCBI nr
Match: KAF3973370.1 (hypothetical protein CMV_003195 [Castanea mollissima])

HSP 1 Score: 90.9 bits (224), Expect = 7.6e-15
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 20  KEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFGLVLMIA 79
           KEE  G+R E +KS ++ +W  M   SM+GGL+ GWWE+++H TNRQLWMVPFGLVL+I 
Sbjct: 8   KEESHGERKERVKSCIVYSWSLM--VSMIGGLIMGWWEYEYHRTNRQLWMVPFGLVLLIT 67

Query: 80  PIFVMMSVLISTFCTSMDHNSTWPVPSSDHV 111
           P FV  S+ +S +C+S   ++     +S  V
Sbjct: 68  PPFVWFSIFVSDWCSSKGEDAPSTTATSQPV 96

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BLAST of Tan0011027 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_010779 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  QAESAMKEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFG 73
           + E  MK E E K+ +N K   +   V + + S+ G  + GWW  +FH + +Q WMVPF 
Sbjct: 6   EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFS 65

Query: 74  LVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDH 110
           LVLMIAPIFV++SV IS+FC SMD  S+  V S DH
Sbjct: 66  LVLMIAPIFVLISVSISSFCNSMDRISSL-VSSLDH 100

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BLAST of Tan0011027 vs. NCBI nr
Match: KAA0048855.1 (putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 putative permease/transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  QAESAMKEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFG 73
           + E  MK E E K+ +N K   +   V + + S+ G  + GWW  +FH + +Q WMVPF 
Sbjct: 6   EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFS 65

Query: 74  LVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDH 110
           LVLMIAPIFV++SV IS+FC SMD  S+  V S DH
Sbjct: 66  LVLMIAPIFVLISVSISSFCNSMDRISSL-VSSLDH 100

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BLAST of Tan0011027 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.5e-36
Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MDQTWRFAGGGEDQA----ESAMKEE-REGKRNENLKSSMMATWV-SMAVASMMGGLVFG 60
           MDQTWRFA GG+++A    ESAMKEE R+ KRN N+KS  +ATWV SM VA + GGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWEFQFHSTNRQLWMVPFGLVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDHVIQQ 114
           WW FQFH TNRQLWMVPF LVLMIAPIFVMMS+LIS FC SMD  +T   PSSDHVIQQ
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQ 119

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BLAST of Tan0011027 vs. ExPASy TrEMBL
Match: A0A7N2MCB4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-14
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 20 KEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFGLVLMIA 79
          +EE  G+R E +K+ ++ +W    + SM+GGL  GWWE+++HSTN QLWMVPFGLVL+I 
Sbjct: 8  REESHGERRERVKTCIVYSW--SLLVSMIGGLTMGWWEYEYHSTNSQLWMVPFGLVLLIT 67

Query: 80 PIFVMMSVLISTFCTS 96
          P+FV  S+ +S  C+S
Sbjct: 68 PLFVWFSIFVSDLCSS 81

[Close]

BLAST of Tan0011027 vs. ExPASy TrEMBL
Match: A0A5D3DB24 (Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00680 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.9e-13
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  QAESAMKEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFG 73
           + E  MK E E K+ +N K   +   V + + S+ G  + GWW  +FH + +Q WMVPF 
Sbjct: 6   EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFS 65

Query: 74  LVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDH 110
           LVLMIAPIFV++SV IS+FC SMD  S+  V S DH
Sbjct: 66  LVLMIAPIFVLISVSISSFCNSMDRISSL-VSSLDH 100

[Close]

BLAST of Tan0011027 vs. ExPASy TrEMBL
Match: A0A0A0L8F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.9e-13
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  QAESAMKEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFG 73
           + E  MK E E K+ +N K   +   V + + S+ G  + GWW  +FH + +Q WMVPF 
Sbjct: 6   EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFS 65

Query: 74  LVLMIAPIFVMMSVLISTFCTSMDHNSTWPVPSSDH 110
           LVLMIAPIFV++SV IS+FC SMD  S+  V S DH
Sbjct: 66  LVLMIAPIFVLISVSISSFCNSMDRISSL-VSSLDH 100

[Close]

BLAST of Tan0011027 vs. ExPASy TrEMBL
Match: A0A6A1W5X8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019179 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 20 KEEREGKRNENLKSSMMATWVSMAVASMMGGLVFGWWEFQFHSTNRQLWMVPFGLVLMIA 79
          K+E + +  E +K  ++ +W  M    M+GGL  G+WEF++H TNRQLWMVPFGL+L++ 
Sbjct: 8  KDESQREYKERVKKFIIYSWALM--VCMIGGLTLGYWEFEYHPTNRQLWMVPFGLILLVT 67

Query: 80 PIFVMMSVLISTFCTS 96
          P+FV  S+++S  C+S
Sbjct: 68 PLFVWFSIVVSDVCSS 81

The following BLAST results are available for this feature:

BLAST of Tan0011027 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011027 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56384.1	1.7e-35	72.27	hypothetical protein Csa_011278 [Cucumis sativus]	[more]
KAG6582696.1	3.4e-23	62.62	hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3973370.1	7.6e-15	48.35	hypothetical protein CMV_003195 [Castanea mollissima]	[more]
KGN56386.1	1.2e-12	47.92	hypothetical protein Csa_010779 [Cucumis sativus]	[more]
KAA0048855.1	1.2e-12	47.92	putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 p...	[more]

BLAST of Tan0011027 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S1	8.5e-36	72.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
A0A7N2MCB4	4.1e-14	51.32	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5D3DB24	5.9e-13	47.92	Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0L8F5	5.9e-13	47.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
A0A6A1W5X8	1.9e-11	46.05	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019179 PE=4 SV=1	[more]

BLAST of Tan0011027 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 40..90 e-value: 2.2E-19 score: 68.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR35165:SF1	OS08G0113900 PROTEIN	coord: 15..101
None	No IPR available	PANTHER	PTHR35165	OS08G0113900 PROTEIN	coord: 15..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011027.1	Tan0011027.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane