Tan0010984 (gene) Snake gourd v1

Overview


Name	Tan0010984
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ATP-dependent RNA helicase DEAH13
Location	LG03: 56238349 .. 56244150 (-)
RNA-Seq Expression	Tan0010984
Synteny	Tan0010984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGGATCTGTTCTATAGGTTGTACAACTGTGTCCTTGAGTTCGAAGGAGACAAGAACCTAAGTCTGGTGGATGAATTGCTGCCATGCGACTAGAGCGTGATTAACTGCTCAATGGACTTTCGGTCCTGCGGCGGTAGAGGATCGTTCTCAGCCTGGGCTCGCCCTGCTGGGATGGTCTCATGGCGGTCTGACAGACTCCAAAACAAAACATTTTTTGCTCTCACTCTTTTTTTTTTGGTTTTCTTTTCTATTTTTTGGGCTGTTTTCTTTGAATCTCCGTTCTCCTCCTTCCCATGTGTTTCTAATTTCGTACTGCAAAACCATTATGGCTGAGATGACAGTGGTTTGGAAGTTGGATTGAATGACGAGTATGATTTGGGCATATTCTTTTGCTTTTGTTCTATATTATTTATACTCTCTGAGGACAGAGTTGGGATGGATTTGTGATCTCATTTTTCCGATTTACATTTAGATTCACCTTTTTTTGTGATAACGAAGATGGAGGAGAGTCGTGGGAAACGTGGATGTTAAGTTTATGCTCCTAAACTGTTTGTTGAAATGCCTCAGAGAGACCTGCTGTTTGTTAGTTTCTGCAACTTCCAACCCAATTCCACATTATTCATATATATGTTTATGGGATTATGCCGTTGATTGCAAGAACGTTGTTCATTTGTTTCTTGTAATTATGTGTATTATTCTTTTAATGGTAAATGAAGGATAAGGAAGGTTATGGATGTCTTGTGTTTACTAAAAGCCATAGGCTGAACAATTACCATTGGGCAGACAAAAAAGAAACAATCAAATCCTCAATTATGGTGCCATCGTAGCCATGGTTGGGAGCTGAAACTTCCCTAATAAATGGTGGCTATGTCTCACTGTCATTGATGTTTGGTTTTTGTTTCTACAGGTTCTGTTGCTGATATGAATTAAACTGGCCTTGGTTTTCAGCACAAGGATTCAGTATATGAGGTTCTCAGCCCCAAAGCAAATCTCACCAAGGAACTGGGCTGCCCCAGCTTATTCTAAGGTTCCATTCCATAGCAATGTAGATTTTAAAAAGAATGTTGCTACATACCCCCGCTTCATAACTATTTGTATTTTGTTTTTTCATCATTTCTTTAGGATGAGTTTCATCTTTCTAAAAAAAAAACATTTCAATTCTTAGCTAAATTCTAACAATAAAAACTACTTTGTGAAAATTACTTTTTTTGGTTTGGGTTTTTACAACATATGTAAAAATTTAGATAACTGATCAAGGAAACCTATAGGTGGAAGAAGTATTTATAGGCTTAACTTTCAAAACCCAAAAACAAAAAATCAAATGGTTATCAAACAAGGTCTTAATTTTTTCTACTTTGGGTAAAAAGTTTAGATCCGTGAACGGTAAAAGTTACAATAATTACATTAATCCTAGTAGTGATGCTTTGACAATAGCTTATGCTTTGCAATGTTTTGAACTTTCTGGAATTCCTGAGGAATTCTGCAACAGCTACGCATTACATTTGAAAACTATGCAAGAAATGTCCAAGTTGAGAAAGCAGCCATTACAACTTGTTTTCAATCATAGTGGCTCTTCTACTGCTGCGTCAGGCTTTTCATGGACTAGTGGGACTTTGGAGGATGTAGAAGATGTGTGGAGGATCCCATCCAATAAGCATCCTCTTTCATTGAACGAGGAAGAGATAATAGGCCAATCTGTGCGGGTTGGCCAGATAGGGTTGCCAAACGTATTAGAGAGATTTCAAAGTCAGCTGAAGGTGACAGAAAAGAGTGTGTTGGAAAGTATCAAGCTTGCTTGGTAAAAGAAACTGTGTTCCTCCACCGATGGTCGTCTGTTTCTCCTTCAGCCCCAGAAATTTTGGTGTACAATGAATTATTATGTACAAAACGACCGTACATGCATGGATTGCCTAGTGTAAAACCAGATTGGCTTGTGAAATATGCTAGTTCCTTGTGTACTTTCTCAGCACCTTTATCAGATCCTAGACCCTATTATGAACCTCGAAATGACAGTATTTTCATGGGTTGCTCCTACATTTGGCCCTCATCTTTGGAAGCTTCCTTTACATAATGTTCCAATAAAAGATAGTGTTCATGGAGTTGCTGTGTTTGCATGTGCTTTGCTTGAAGGGAATGTGTTGCCATGCTTAAAGTCTGTGTGCAAGTTCATGGCAGCTCCTCCTGGTAGTATCTTAAGGCCAGAGGCGTTTGGTCAAAAAAGAGTTGGCAATCTTCTCTCTAGACTGAAATCTAAGAAGATCAACAGCTGTGCCACATTGAGAGAGGCTTGGAAGGATAATCCTTATGAACTCCACTCAGAAATCTTTGATTGGTTTCAAGGGAGTTATCACAGTTACTTTGAAGATCTTTGGTCCCAAATGCTTTGTGAAGTACAAGAGCCCCAAAAATGTCTCTCGGAGGGGTTAACAAGGGCCAGGAAAAAAAAATTGAATACTGAATGACCTTTTGATAAAATGTGAGAATTTGAAACCTATAAGATATGGGGATGAAAAAAGGTACATACATCTTTTGTAAATTTGATGTTCAATTTATACAAAATTTTGGTTCAAGGTTTGCCTTTTAGTTAAGGTGAGTTGTTTGTGCTTTTTTTCAGGGTTTTAACTTTTTGAATTCTTTCTTTTTGTAACTTTATATCATGCTTCATTTATTTCTAAAATAAATTGGGACTCATGCTTCATGTCATACCCTCTTTTGAAAGAGAAGGGAGCCATAGCCCAGCTTAGTAATATTTAGTGACCAGGACAACAATTTCAGATGGTTTCTTCTTCTATGTATGGTTCGTGTGAATTTCCTCTGTAGGTGTGGTTTTGGTTTGCTTTACTATCTTTATGACATTCTCCCATCTCATAGCTCAATCTGTCCGAAGCTCTGATTGAGTTGATCCTGCACGAGGTATGTATTTGCACATGTACTAATTTCTTAGTTGTCTGAAATTTTGGCTTGGATTAAAGGGTAATAACAATTTGATGTTTGAATTTGAAGAAACCAATTCTAGCTTCAAATGCCCATGGTCCAAAACTCGTTATAATGAAGATGCCAAATGTTCATGACCTGATGGAATCCATGTTAATGGTGGTACAGGGGTCTACTCTCTAATGTTGGTATGTGTCTTACTACAAAAATTTTATCTTTCAATATTAAAGAAAAATGAACATGGCATAAGGTGGAAGGCATTGTGCAAACTACTCAACGTCCTCTTTGATATGTTGAGTTTGCAGTTTGTAATAACAAATAAGCTCACTGTTGTCCAATCTCTTTTAACCATATATCTCACATTTGGATACAGTACTTTTAATTTTCTGATTCTTGGTGATGGATGATCAAAATGGCATTGCTAATAATTGGGGACATTCCTTCCCATTGCGTTCATGGGTTTGATTCTTGAACTCTTGTGTAGAATTTCTATTTTTTACATATCAATTGCATATTCCTCTTCCATGATCATCTGCTTGTTTCAATGAAGCAGAATTTGAAGGATTCTTATTTTTATGCTTTGATTTTCAAGTCCTGTTTTGTACTGATTTTGAATACGACCAGAGTAAAATCACTTCCAAACATGCTTTACAATTTTCTAATCTGGTTCATAAGTAATAAATTTATTTTCCATAAATTTATTATTAATTTATGTTGCAGCTTAACCTAATTCAACTATGTGCTTAACTACGTGAGCTGATTAAATCTGAGGCAAAAATCTTCTATCTTTTAATAGTTAATGAGTTTATTTTTAAGATTCTGCATTTAAATGCTGGTTTTGTATGTGGAATTGAATGAAGGATTCTCACTGTTCATGAAGTCCTCTTAATATTTTTTTTCTTTGTAGTTGTACTATTGTTTTGCCTTTTACCTTCCTTCCAAATATTATTAAGGCAGAGCCTGAATCATTAATTTCAAAATAGTATGACTTTAGAGTGTTATTGGTCTTCAATAAAAATGTTATTGTTGTGCTTGGGCATCCATTTTTCTGGCAGAAATTCCATATGTTATTCATTTGTTTGCAAAGTATTGCTTATATGTTGAAGATTCTTCTGTATTCAGTACATATATATGTGGCCACATCTCATATTAATTACTCCAAAGTGCATATAGATGTTGAAGCTTCTTCTTTGGTTTAATTTTCTTTGTACTTATATTACATAAATTATGGTATTATTTTAGGCTGTTTTAGCATATGATTAGGCAGAGGAGATCTTACTCCAAAGTGATTTTGAGATTCACAGACCAAAGTTGCTCTCATTGGTCCAAATTCATCATGCACAGGTTACAATTTATATCCGTTTTTTTTTTGTATGCCCTTGTACATGCTTTCGTATTTCTCAACGAAGGTCAGTTTCGTATTAAAAAAAAGTATAACTGCGTTAGCCTTACCTCTCTCCTCTTTGGTTATACTTCTATCCTTTTTGTGAATAATAGACACCTTTTCATGAACTGTCTAGAGTCTCCTTCAAGAAAGTGTAGGGGATAATAGTTCAAACAAAAACTTGAACAAGAGGAGCTTGTTCAGATTTTTTCTAAACTTAAGCATTCAATGCAATATGATGTTAGACAGGTGATAACTATAATGTACTACTATATTCTATTATTATCTACTTTTATGCCATTTTATGGGTAATTCCTGGATATTATATACATTTTGTGTTATTTACAATTAACTCCAGGAATTTGAACAAAATTATGTAATTTGTATATTTTGTAGAAAAATGGAGATTTTTGGGTTTCAATTTCATAATTAGACACATTTTTGTAAATTGGATTAAAGCTTGTATTAATTTTCATATAGTCTATACATGGGAACTTAATTGATGTATGAGAATTAACTACTTGTTTAGAAAGCTTCCATTAATAGATTGTTGAACAAGTTCCCTTGTTGGATAAGTTTCCTTGTAGATTGTTCAACAAGCTTCCTAATAGATTGTTTGACAAGGTGTGTCCAAGAAGCCAATTACATTCTCCATTCCAAATTGCCATTGTCGGGGTGTTAGCTCTTAGAATGAGAGCTAAGATTGAGTTTTTATTGTGATTATTTCTTGGTATTTTGAGCTTTCTTAACTGTTTTAACCCCTTGAGTAGGTATTTTTGTATGTTAATATTTACAAAGTAGTTTTGAAGTACCTTAAAGTCATTGAAGTACTTTTCATTGCTGATTGTTGCCATTTTGGCCTTGTTTACAGGAGTTTTGGGATGATGGATGTTATGAAGTCTTTGAAGTCTCACCGTGAGCTCATCAGAGTCATGCATTTGTTTGAAGAGTAAAGATTGTTGGAGCAAAATTGTGATCCAGTTCGCAGAATATACACGTAGACAAAATTCATTAATTGAGCTGACAATAGATGCCATATCAGCTGCTGTGAGCCAATGGAAAGCCACCAGACCACTTCTCCTGTCTATTCAACCCTCATTTCGAGATGGATATGCTATAAATGTTTTCTTAAGCCGTTTTTGGAAGCAAAGAAGGACAAGAGGGAGAAAAGAAAGGGAAACCGATTGGGGGAAAGGTGCAGCACGAGAAAGTCAAGGAGAGGCCAAAGTTGGGAGTATTCCTCTTCTGGAAGGAAGCTGGAGTAGACTAAAGGGAGCCTTGGAACTTCACCCATTTGTTTACTCTTCTTATTTACTTGCCCTTACTCTATCTACTTTGTAATTAAGACTTTTTAAGTATGTTTAGAACTAGATTTACTGTTTATTGCTTTCTTTACTTAATATGTCGAACTAATCACCCTTGGGGTGAGGATTAAGAGACTTTATATGAAAGCAACTTAATGCAAGAGTTTATTACTGCAAA

mRNA sequence

AACAGGATCTGTTCTATAGGTTGTACAACTGTGTCCTTGAGTTCGAAGGAGACAAGAACCTAAGTCTGGTGGATGAATTGCTGCCATGCGACTAGAGCGTGATTAACTGCTCAATGGACTTTCGGTCCTGCGGCGGTAGAGGATCGTTCTCAGCCTGGGCTCGCCCTGCTGGGATGGTCTCATGGCGGTCTGACAGACTCCAAAACAAAACATTTTTTGCTCTCACTCTTTTTTTTTTGGTTTTCTTTTCTATTTTTTGGGCTGTTTTCTTTGAATCTCCGTTCTCCTCCTTCCCATGTGTTTCTAATTTCGTACTGCAAAACCATTATGGCTGAGATGACAGTGGTTTGGAAGTTGGATTGAATGACGAGTATGATTTGGGCATATTCTTTTGCTTTTGTTCTATATTATTTATACTCTCTGAGGACAGAGTTGGGATGGATTTGTGATCTCATTTTTCCGATTTACATTTAGATTCACCTTTTTTTGTGATAACGAAGATGGAGGAGAGTCGTGGGAAACGTGGATGTTAAGTTTATGCTCCTAAACTGTTTGTTGAAATGCCTCAGAGAGACCTGCTGTTTGTTAGTTTCTGCAACTTCCAACCCAATTCCACATTATTCATATATATGTTTATGGGATTATGCCGTTGATTGCAAGAACGTTGTTCATTTGTTTCTTGTAATTATGTGTATTATTCTTTTAATGGTAAATGAAGGATAAGGAAGGTTATGGATGTCTTGTGTTTACTAAAAGCCATAGGCTGAACAATTACCATTGGGCAGACAAAAAAGAAACAATCAAATCCTCAATTATGGTGCCATCGTAGCCATGGTTGGGAGCTGAAACTTCCCTAATAAATGGTGGCTATGTCTCACTGTCATTGATGTTTGGTTTTTGTTTCTACAGGTTCTGTTGCTGATATGAATTAAACTGGCCTTGGTTTTCAGCACAAGGATTCAGTATATGAGGTTCTCAGCCCCAAAGCAAATCTCACCAAGGAACTGGGCTGCCCCAGCTTATTCTAAGGTTCCATTCCATAGCAATGTAGATTTTAAAAAGAATGTTGCTACATACCCCCGCTTCATAACTATTTGTATTTTGTTTTTTCATCATTTCTTTAGGATGAGTTTCATCTTTCTAAAAAAAAAACATTTCAATTCTTAGCTAAATTCTAACAATAAAAACTACTTTGTGAAAATTACTTTTTTTGGTTTGGGTTTTTACAACATATGTAAAAATTTAGATAACTGATCAAGGAAACCTATAGGTGGAAGAAGTATTTATAGGCTTAACTTTCAAAACCCAAAAACAAAAAATCAAATGGTTATCAAACAAGGTCTTAATTTTTTCTACTTTGGGTAAAAAGTTTAGATCCGTGAACGGTAAAAGTTACAATAATTACATTAATCCTAGTAGTGATGCTTTGACAATAGCTTATGCTTTGCAATGTTTTGAACTTTCTGGAATTCCTGAGGAATTCTGCAACAGCTACGCATTACATTTGAAAACTATGCAAGAAATGTCCAAGTTGAGAAAGCAGCCATTACAACTTGTTTTCAATCATAGTGGCTCTTCTACTGCTGCGTCAGGCTTTTCATGGACTAGTGGGACTTTGGAGGATGTAGAAGATGTGTGGAGGATCCCATCCAATAAGCATCCTCTTTCATTGAACGAGGAAGAGATAATAGGCCAATCTGTGCGGGTTGGCCAGATAGGGTTGCCAAACGTATTAGAGAGATTTCAAAGTCAGCTGAAGGTGACAGAAAAGAGTGTGTTGGAAAGTATCAAGCTTGCTTGGTAAAAGAAACTGTGTTCCTCCACCGATGGTCGTCTGTTTCTCCTTCAGCCCCAGAAATTTTGGTGTACAATGAATTATTATGTACAAAACGACCGTACATGCATGGATTGCCTAGTGTAAAACCAGATTGGCTTGTGAAATATGCTAGTTCCTTGTGTACTTTCTCAGCACCTTTATCAGATCCTAGACCCTATTATGAACCTCGAAATGACAGTATTTTCATGGGTTGCTCCTACATTTGGCCCTCATCTTTGGAAGCTTCCTTTACATAATGTTCCAATAAAAGATAGTGTTCATGGAGTTGCTGTGTTTGCATGTGCTTTGCTTGAAGGGAATGTGTTGCCATGCTTAAAGTCTGTGTGCAAGTTCATGGCAGCTCCTCCTGGTAGTATCTTAAGGCCAGAGGCGTTTGGTCAAAAAAGAGTTGGCAATCTTCTCTCTAGACTGAAATCTAAGAAGATCAACAGCTGTGCCACATTGAGAGAGGCTTGGAAGGATAATCCTTATGAACTCCACTCAGAAATCTTTGATTGGTTTCAAGGGAGTTATCACAGTTACTTTGAAGATCTTTGGTCCCAAATGCTTTGTGAAGTACAAGAGCCCCAAAAATGTCTCTCGGAGGGGTTAACAAGGGCCAGGAAAAAAAAATTGAATACTGAATGACCTTTTGATAAAATGTGAGAATTTGAAACCTATAAGATATGGGGATGAAAAAAGGTACATACATCTTTTGTAAATTTGATGTTCAATTTATACAAAATTTTGGTTCAAGGTTTGCCTTTTAGTTAAGGTGAGTTGTTTGTGCTTTTTTTCAGGGTTTTAACTTTTTGAATTCTTTCTTTTTGTAACTTTATATCATGCTTCATTTATTTCTAAAATAAATTGGGACTCATGCTTCATGTCATACCCTCTTTTGAAAGAGAAGGGAGCCATAGCCCAGCTTAGTAATATTTAGTGACCAGGACAACAATTTCAGATGGTTTCTTCTTCTATGTATGGTTCGTGTGAATTTCCTCTGTAGGTGTGGTTTTGGTTTGCTTTACTATCTTTATGACATTCTCCCATCTCATAGCTCAATCTGTCCGAAGCTCTGATTGAGTTGATCCTGCACGAGAAACCAATTCTAGCTTCAAATGCCCATGGTCCAAAACTCGTTATAATGAAGATGCCAAATGTTCATGACCTGATGGAATCCATGTTAATGGTGGTACAGGGGTCTACTCTCTAATGTTGGAGTTTTGGGATGATGGATGTTATGAAGTCTTTGAAGTCTCACCGTGAGCTCATCAGAGTCATGCATTTGTTTGAAGAGTAAAGATTGTTGGAGCAAAATTGTGATCCAGTTCGCAGAATATACACGTAGACAAAATTCATTAATTGAGCTGACAATAGATGCCATATCAGCTGCTGTGAGCCAATGGAAAGCCACCAGACCACTTCTCCTGTCTATTCAACCCTCATTTCGAGATGGATATGCTATAAATGTTTTCTTAAGCCGTTTTTGGAAGCAAAGAAGGACAAGAGGGAGAAAAGAAAGGGAAACCGATTGGGGGAAAGGTGCAGCACGAGAAAGTCAAGGAGAGGCCAAAGTTGGGAGTATTCCTCTTCTGGAAGGAAGCTGGAGTAGACTAAAGGGAGCCTTGGAACTTCACCCATTTGTTTACTCTTCTTATTTACTTGCCCTTACTCTATCTACTTTGTAATTAAGACTTTTTAAGTATGTTTAGAACTAGATTTACTGTTTATTGCTTTCTTTACTTAATATGTCGAACTAATCACCCTTGGGGTGAGGATTAAGAGACTTTATATGAAAGCAACTTAATGCAAGAGTTTATTACTGCAAA

Coding sequence (CDS)

ATGCTAGTTCCTTGTGTACTTTCTCAGCACCTTTATCAGATCCTAGACCCTATTATGAACCTCGAAATGACAGTATTTTCATGGGTTGCTCCTACATTTGGCCCTCATCTTTGGAAGCTTCCTTTACATAATGTTCCAATAAAAGATAGTGTTCATGGAGTTGCTGTGTTTGCATGTGCTTTGCTTGAAGGGAATGTGTTGCCATGCTTAAAGTCTGTGTGCAAGTTCATGGCAGCTCCTCCTGGTAGTATCTTAAGGCCAGAGGCGTTTGGTCAAAAAAGAGTTGGCAATCTTCTCTCTAGACTGAAATCTAAGAAGATCAACAGCTGTGCCACATTGAGAGAGGCTTGGAAGGATAATCCTTATGAACTCCACTCAGAAATCTTTGATTGGTTTCAAGGGAGTTATCACAGTTACTTTGAAGATCTTTGGTCCCAAATGCTTTGTGAAGTACAAGAGCCCCAAAAATGTCTCTCGGAGGGGTTAACAAGGGCCAGGAAAAAAAAATTGAATACTGAATGA

Protein sequence

MLVPCVLSQHLYQILDPIMNLEMTVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGSILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDLWSQMLCEVQEPQKCLSEGLTRARKKKLNTE

Homology

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BLAST of Tan0010984 vs. ExPASy Swiss-Prot
Match: Q9C813 (ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana OX=3702 GN=FAS4 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-27
Identity = 64/146 (43.84%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 5    CVLSQHLYQILDPIMNLEMTVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEG 64
            CV S  L        + E  V  WV P+FGPH W+LP H+V I +     A F CALL+G
Sbjct: 1086 CVFSAPLKDPKPYYSSEEDRVLCWVVPSFGPHNWELPAHSVAITEDRDRAAAFGCALLQG 1145

Query: 65   NVLPCLKSVCKFMAAPPGSILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYEL 124
             VL CLKS    +A  P ++L  EA+G +RVG+L+  L  KKI++  +LR+ W+ NP  L
Sbjct: 1146 EVLTCLKSFRALLAGKPETLLEREAWGLERVGSLVMVLTEKKIDTLESLRKNWEQNPNVL 1205

Query: 125  HSEIFDWFQGSYHSYFEDLWSQMLCE 151
            +SEI  WFQ  +    +DLW  ML E
Sbjct: 1206 YSEIEVWFQKKFRHRVKDLWQTMLKE 1231

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BLAST of Tan0010984 vs. ExPASy Swiss-Prot
Match: O46072 (Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster OX=7227 GN=kz PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 37/144 (25.69%), Postives = 61/144 (42.36%), Query Frame = 0


Query: 16   DPIMNLEMT---VFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKS 75
            DP    + T   +F  V  TFG   W+LPL  V +  S      F   LL+G V   L  
Sbjct: 1050 DPAPRFDKTSGKIFCHVDATFGKSGWELPLGEVEMPLSEKACCYFGMFLLDGEVCSRLAD 1109

Query: 76   VCKFMAAPPGSILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWF 135
                + + P S+++  +    +V      L +K+I++   L + W  +P+ L  E  +  
Sbjct: 1110 FRSKLKSTPASVIKSWSSMNNKVLRFKRALITKQIHNRQALIDQWNSDPHFLLEEYQNLL 1169

Query: 136  QGSYHSYFEDLWSQMLCEVQEPQK 157
                 S    LW  +  + +EPQ+
Sbjct: 1170 YDVALSELTPLWPPV--DKKEPQR 1191

[Close]

BLAST of Tan0010984 vs. NCBI nr
Match: XP_023548152.1 (ATP-dependent RNA helicase DEAH13 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 3.5e-67
Identity = 126/145 (86.90%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TVFSWVAPTFGPHLWKLPLHN PIKD+ HGVAVFACALLEGNVLPCLK V KFMAAPP S
Sbjct: 1176 TVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKYVRKFMAAPPSS 1235

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINSCATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1236 ILRPEALGQKRVGNLLSRLKSKKINSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDL 1295

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKK 169
            WSQMLCEVQEP + LS  L RA+KK
Sbjct: 1296 WSQMLCEVQEPPERLSRKLKRAKKK 1320

[Close]

BLAST of Tan0010984 vs. NCBI nr
Match: XP_023548153.1 (ATP-dependent RNA helicase DEAH13 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 3.5e-67
Identity = 126/145 (86.90%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TVFSWVAPTFGPHLWKLPLHN PIKD+ HGVAVFACALLEGNVLPCLK V KFMAAPP S
Sbjct: 1087 TVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKYVRKFMAAPPSS 1146

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINSCATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1147 ILRPEALGQKRVGNLLSRLKSKKINSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDL 1206

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKK 169
            WSQMLCEVQEP + LS  L RA+KK
Sbjct: 1207 WSQMLCEVQEPPERLSRKLKRAKKK 1231

[Close]

BLAST of Tan0010984 vs. NCBI nr
Match: XP_022953700.1 (ATP-dependent RNA helicase DEAH13 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 5.9e-67
Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TVFSWVAPTFGPHLWKLPLHN PIKD+ HGVAVFACALLEGNVLPCLK+V KFMAAPP S
Sbjct: 1176 TVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKNVRKFMAAPPSS 1235

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINSCATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1236 ILRPEALGQKRVGNLLSRLKSKKINSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDL 1295

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKK 169
            WSQMLCE++EP + LS  L RA+KK
Sbjct: 1296 WSQMLCEIREPPERLSRKLKRAKKK 1320

[Close]

BLAST of Tan0010984 vs. NCBI nr
Match: XP_022991216.1 (ATP-dependent RNA helicase DEAH13 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 124/145 (85.52%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TVFSWVAPTFGPHLWKLPLHN PIKD+ HGVAVFACALLEGNVLPCLK V KF+AAPP S
Sbjct: 1176 TVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKYVRKFLAAPPSS 1235

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKI SCATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1236 ILRPEALGQKRVGNLLSRLKSKKITSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDL 1295

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKK 169
            WSQMLCEVQEP + LS  L RA+KK
Sbjct: 1296 WSQMLCEVQEPPERLSRKLKRAKKK 1320

[Close]

BLAST of Tan0010984 vs. NCBI nr
Match: KAA0046661.1 (ATP-dependent RNA helicase DEAH13 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 4.0e-63
Identity = 121/147 (82.31%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TV+SWVAPTFGPHLW+LPLHNVPIKD+V GVAVFACALL+G VLPCL SV +FMAA PGS
Sbjct: 1254 TVYSWVAPTFGPHLWELPLHNVPIKDNVQGVAVFACALLKGKVLPCLTSVREFMAARPGS 1313

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINS ATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1314 ILRPEALGQKRVGNLLSRLKSKKINSRATLRAVWKDNPYELHSEILDWFQKSYHSHFEDL 1373

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKKKL 171
            WSQMLCEVQ PQK L + L RA++KK+
Sbjct: 1374 WSQMLCEVQLPQKRLIKKLERAKEKKI 1400

[Close]

BLAST of Tan0010984 vs. ExPASy TrEMBL
Match: A0A6J1GQE0 (ATP-dependent RNA helicase DEAH13 OS=Cucurbita moschata OX=3662 GN=LOC111456150 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.9e-67
Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TVFSWVAPTFGPHLWKLPLHN PIKD+ HGVAVFACALLEGNVLPCLK+V KFMAAPP S
Sbjct: 1176 TVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKNVRKFMAAPPSS 1235

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINSCATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1236 ILRPEALGQKRVGNLLSRLKSKKINSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDL 1295

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKK 169
            WSQMLCE++EP + LS  L RA+KK
Sbjct: 1296 WSQMLCEIREPPERLSRKLKRAKKK 1320

[Close]

BLAST of Tan0010984 vs. ExPASy TrEMBL
Match: A0A6J1JQ48 (ATP-dependent RNA helicase DEAH13 OS=Cucurbita maxima OX=3661 GN=LOC111487937 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 124/145 (85.52%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TVFSWVAPTFGPHLWKLPLHN PIKD+ HGVAVFACALLEGNVLPCLK V KF+AAPP S
Sbjct: 1176 TVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKYVRKFLAAPPSS 1235

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKI SCATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1236 ILRPEALGQKRVGNLLSRLKSKKITSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDL 1295

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKK 169
            WSQMLCEVQEP + LS  L RA+KK
Sbjct: 1296 WSQMLCEVQEPPERLSRKLKRAKKK 1320

[Close]

BLAST of Tan0010984 vs. ExPASy TrEMBL
Match: A0A5D3D3U9 (ATP-dependent RNA helicase DEAH13 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001340 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.9e-63
Identity = 121/147 (82.31%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TV+SWVAPTFGPHLW+LPLHNVPIKD+V GVAVFACALL+G VLPCL SV +FMAA PGS
Sbjct: 1240 TVYSWVAPTFGPHLWELPLHNVPIKDNVQGVAVFACALLKGKVLPCLTSVREFMAARPGS 1299

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINS ATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1300 ILRPEALGQKRVGNLLSRLKSKKINSRATLRAVWKDNPYELHSEILDWFQKSYHSHFEDL 1359

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKKKL 171
            WSQMLCEVQ PQK L + L RA++KK+
Sbjct: 1360 WSQMLCEVQLPQKRLIKKLERAKEKKI 1386

[Close]

BLAST of Tan0010984 vs. ExPASy TrEMBL
Match: A0A5A7TZA4 (ATP-dependent RNA helicase DEAH13 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00270 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.9e-63
Identity = 121/147 (82.31%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TV+SWVAPTFGPHLW+LPLHNVPIKD+V GVAVFACALL+G VLPCL SV +FMAA PGS
Sbjct: 1254 TVYSWVAPTFGPHLWELPLHNVPIKDNVQGVAVFACALLKGKVLPCLTSVREFMAARPGS 1313

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINS ATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1314 ILRPEALGQKRVGNLLSRLKSKKINSRATLRAVWKDNPYELHSEILDWFQKSYHSHFEDL 1373

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKKKL 171
            WSQMLCEVQ PQK L + L RA++KK+
Sbjct: 1374 WSQMLCEVQLPQKRLIKKLERAKEKKI 1400

[Close]

BLAST of Tan0010984 vs. ExPASy TrEMBL
Match: A0A1S3BRN5 (ATP-dependent RNA helicase DEAH13 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492788 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.3e-63
Identity = 120/147 (81.63%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 24   TVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEGNVLPCLKSVCKFMAAPPGS 83
            TV+SWVAPTFGPHLW+LPLHNVPIKD+  GVAVFACALL+G VLPCL SV +FMAA PGS
Sbjct: 1177 TVYSWVAPTFGPHLWELPLHNVPIKDNAQGVAVFACALLKGKVLPCLTSVREFMAARPGS 1236

Query: 84   ILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYELHSEIFDWFQGSYHSYFEDL 143
            ILRPEA GQKRVGNLLSRLKSKKINS ATLR  WKDNPYELHSEI DWFQ SYHS+FEDL
Sbjct: 1237 ILRPEALGQKRVGNLLSRLKSKKINSRATLRAVWKDNPYELHSEILDWFQKSYHSHFEDL 1296

Query: 144  WSQMLCEVQEPQKCLSEGLTRARKKKL 171
            WSQMLCEVQ PQK L + L RA++KK+
Sbjct: 1297 WSQMLCEVQLPQKRLIKKLGRAKEKKI 1323

[Close]

BLAST of Tan0010984 vs. TAIR 10
Match: AT1G33390.1 (RNA helicase family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 64/146 (43.84%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 5    CVLSQHLYQILDPIMNLEMTVFSWVAPTFGPHLWKLPLHNVPIKDSVHGVAVFACALLEG 64
            CV S  L        + E  V  WV P+FGPH W+LP H+V I +     A F CALL+G
Sbjct: 1086 CVFSAPLKDPKPYYSSEEDRVLCWVVPSFGPHNWELPAHSVAITEDRDRAAAFGCALLQG 1145

Query: 65   NVLPCLKSVCKFMAAPPGSILRPEAFGQKRVGNLLSRLKSKKINSCATLREAWKDNPYEL 124
             VL CLKS    +A  P ++L  EA+G +RVG+L+  L  KKI++  +LR+ W+ NP  L
Sbjct: 1146 EVLTCLKSFRALLAGKPETLLEREAWGLERVGSLVMVLTEKKIDTLESLRKNWEQNPNVL 1205

Query: 125  HSEIFDWFQGSYHSYFEDLWSQMLCE 151
            +SEI  WFQ  +    +DLW  ML E
Sbjct: 1206 YSEIEVWFQKKFRHRVKDLWQTMLKE 1231

The following BLAST results are available for this feature:

BLAST of Tan0010984 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C813	2.1e-27	43.84	ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana OX=3702 GN=FAS4 PE=2 S...	[more]
O46072	1.9e-04	25.69	Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster OX=7227 GN=k...	[more]

BLAST of Tan0010984 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548152.1	3.5e-67	86.90	ATP-dependent RNA helicase DEAH13 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023548153.1	3.5e-67	86.90	ATP-dependent RNA helicase DEAH13 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022953700.1	5.9e-67	85.52	ATP-dependent RNA helicase DEAH13 [Cucurbita moschata]	[more]
XP_022991216.1	3.8e-66	85.52	ATP-dependent RNA helicase DEAH13 [Cucurbita maxima]	[more]
KAA0046661.1	4.0e-63	82.31	ATP-dependent RNA helicase DEAH13 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0010984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQE0	2.9e-67	85.52	ATP-dependent RNA helicase DEAH13 OS=Cucurbita moschata OX=3662 GN=LOC111456150 ...	[more]
A0A6J1JQ48	1.9e-66	85.52	ATP-dependent RNA helicase DEAH13 OS=Cucurbita maxima OX=3661 GN=LOC111487937 PE...	[more]
A0A5D3D3U9	1.9e-63	82.31	ATP-dependent RNA helicase DEAH13 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5A7TZA4	1.9e-63	82.31	ATP-dependent RNA helicase DEAH13 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BRN5	7.3e-63	81.63	ATP-dependent RNA helicase DEAH13 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Tan0010984 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33390.1	1.5e-28	43.84	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR18934:SF232	SUBFAMILY NOT NAMED	coord: 21..152
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 21..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010984.2	Tan0010984.2	mRNA
Tan0010984.5	Tan0010984.5	mRNA
Tan0010984.1	Tan0010984.1	mRNA
Tan0010984.3	Tan0010984.3	mRNA
Tan0010984.4	Tan0010984.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity