Tan0010837 (gene) Snake gourd v1

Overview


Name	Tan0010837
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	LG09: 66436757 .. 66438706 (+)
RNA-Seq Expression	Tan0010837
Synteny	Tan0010837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACTTAATTTTAAAAAAGCGAAAATATTTTGACCACATGAAGGAAAGAAAAAAGTAAGAAGGAAATAAAAACAGTGTGGATTCAGGGTCCCTGATAACGGTTTCCCGCTTTCAGAGCTAAACCAACCAACAAACCAAAAAGTCTCTTCTGTCAACCTCTTTCAGGCCCTCATTTTTCCCCCCCATTTTTTCAAACCCTAGACCTGACTGAAAATCGCATTCAGAGTTCAAGACTCTGCTCTTCCAAAATCAATTACCTGAAAATTCTCCATTCGTCTTTCTACTACCTGAAATTTTGGCTACAGCTCGATTCATGGCTCGCATTGAACCGAATTTTCCGGATTCTTGCTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGCCGGAGTCTTCGCTACCAGAGGCTTCCGCCACAGCTCCTCCGTCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGGTAACCTTTTTCCCTCTTTGTATCGATATTCATACATCTCCGCAAAACATTTCTGTGAATAATCTGTGTATATTTGGAATGTTTCGAATCTTGATGCTGATTTGAGATTTCTTTTCCTATACGTTCCGACGTTCTCCGCTTGGACTGGGTTGAATTAATTACACCATTGATTGTTGAAAGATTTTAGTTTTTCAACGTGTTTATTTAATAGAATTCTTGGTAATGTATATGCTTAGAGGTGCAAGTTGCAAGGACAGCGAAAGTGGAAAATCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGGATAAAGAAGATGTCAAGATTTCATGGTACGCTGTTGGGGATTTGGACTACTGAACCGCGCATATTAATCTAATCTGTTTGATTGAAAATGTGTTGATATTGAATTGTTTATTTGGTGCAAATGCAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTCATCGATGACAAATCAGATATCAAACGCTTTGGAATCAGGGATGGTGATCAGGTATTCCCCTCGAATGCTTAACATTGCTTAATTTATAGTTTTTTTTTTTTTTATGACGTTTGAGTCTTGTCTTGTATTTGATCTAGTAATTAATGAGAGTTATATCGATATGTTCCCCCATGCAGCTGCATTTTATGAACCGTGTAGCTTAATTTTTGCCAAGAATCTGTGGATTTGAGATGCCCCAAAAGAATAAATGGAAAGGACGTTGGTTGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGTTTGATTATTGTAAAGTGGTCAGATGGGTCTTTTTCTTTTCCTTTCCTCATGTTAAATTGGAATTCTTAGTATCTCTCTCTCTATATATTGGATGAAGTACATTTCATTTGTGCCTTTCAAGACTCCATTTTCCTTTCTTTCAATCCAAAAATAAAGTCCATTAGTTCGATTTTCTCAGGTCCCGTTTGATAATCATTTGGTTTTTAGTTTTTGAAAATTAAGCTTAAAAATATTACTTCTACGGATAGGTTTCTATGTTTTCTTATTTACTTTGTATCTATGTTTTAAAAAACAAAGCTAAGTTTTGAAAACTAAAAAAAATAGTTTTCAAAAACTTGTTTTGTTTTTGAAATTTGGCTAGAAACTTAAGTCGTATCTTTGGAAAGCATTGTAGAGAAGATGGAGAGAATTTGTTAAAAAACAAGTATAATTTTTCAAAACCAAAAAACAAAAATCAAATGGTTATCAAACGGGATCTAAGGTATTTAAATTACTTAAAGAAGAGAACAGCAAGGAAGAATGGCGAAGAAGATGCCCAAGTCAAGTGATCTGAAATTGATACATTTCTTTTGAGAATCTGAGATGATGAATGTCAATGCCTGATCTACTTGGTGCATGGGAGAGTGCAAGCTCTACAGTGTGAAGCTATGAAGTCTCTGAAGATTTTCAGCTGAGTATATATGTTTTGGTGGCC

mRNA sequence

AAAAACTTAATTTTAAAAAAGCGAAAATATTTTGACCACATGAAGGAAAGAAAAAAGTAAGAAGGAAATAAAAACAGTGTGGATTCAGGGTCCCTGATAACGGTTTCCCGCTTTCAGAGCTAAACCAACCAACAAACCAAAAAGTCTCTTCTGTCAACCTCTTTCAGGCCCTCATTTTTCCCCCCCATTTTTTCAAACCCTAGACCTGACTGAAAATCGCATTCAGAGTTCAAGACTCTGCTCTTCCAAAATCAATTACCTGAAAATTCTCCATTCGTCTTTCTACTACCTGAAATTTTGGCTACAGCTCGATTCATGGCTCGCATTGAACCGAATTTTCCGGATTCTTGCTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGCCGGAGTCTTCGCTACCAGAGGCTTCCGCCACAGCTCCTCCGTCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGACAGCGAAAGTGGAAAATCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGGATAAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTCATCGATGACAAATCAGATATCAAACGCTTTGGAATCAGGGATGGTGATCAGCTGCATTTTATGAACCGTGTAGCTTAATTTTTGCCAAGAATCTGTGGATTTGAGATGCCCCAAAAGAATAAATGGAAAGGACGTTGGTTGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGTTTGATTATTGTAAAGTGGTCAGATGGGTCTTTTTCTTTTCCTTTCCTCATGTTAAATTGGAATTCTTAGTATCTCTCTCTCTATATATTGGATGAAGTACATTTCATTTGTGCCTTTCAAGACTCCATTTTCCTTTCTTTCAATCCAAAAATAAAGTCCATTAGTTCGATTTTCTCAGGTCCCGTTTGATAATCATTTGGTTTTTAGTTTTTGAAAATTAAGCTTAAAAATATTACTTCTACGGATAGGTTTCTATGTTTTCTTATTTACTTTGTATCTATGTTTTAAAAAACAAAGCTAAGTTTTGAAAACTAAAAAAAATAGTTTTCAAAAACTTGTTTTGTTTTTGAAATTTGGCTAGAAACTTAAGTCGTATCTTTGGAAAGCATTGTAGAGAAGATGGAGAGAATTTGTTAAAAAACAAGTATAATTTTTCAAAACCAAAAAACAAAAATCAAATGGTTATCAAACGGGATCTAAGGTATTTAAATTACTTAAAGAAGAGAACAGCAAGGAAGAATGGCGAAGAAGATGCCCAAGTCAAGTGATCTGAAATTGATACATTTCTTTTGAGAATCTGAGATGATGAATGTCAATGCCTGATCTACTTGGTGCATGGGAGAGTGCAAGCTCTACAGTGTGAAGCTATGAAGTCTCTGAAGATTTTCAGCTGAGTATATATGTTTTGGTGGCC

Coding sequence (CDS)

ATGGCTCGCATTGAACCGAATTTTCCGGATTCTTGCTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGCCGGAGTCTTCGCTACCAGAGGCTTCCGCCACAGCTCCTCCGTCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGACAGCGAAAGTGGAAAATCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGGATAAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTCATCGATGACAAATCAGATATCAAACGCTTTGGAATCAGGGATGGTGATCAGCTGCATTTTATGAACCGTGTAGCTTAA

Protein sequence

MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRVA

Homology

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BLAST of Tan0010837 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVK-ISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +A +++L+  ++     M       + ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHYKLIDDKSDIKRFGIRDGDQLHFM 122
            + KL+DD + ++  GIR+  Q+ FM
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of Tan0010837 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-05
Identity = 26/92 (28.26%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFC 94
           Q + + V K+DG    V V ++A V +L+ A++  +  +  ++E     ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 95  LCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV 125
           L     KL +D+  ++ +GIR+ D++ F+ ++
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Tan0010837 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-05
Identity = 26/92 (28.26%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFC 94
           Q + + V K+DG    V V + A V +L+ A++  +  +  ++E     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 95  LCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV 125
           L     KL +D+  ++ +GIR+ D++ F+ ++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Tan0010837 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.8e-05
Identity = 26/92 (28.26%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFC 94
           Q + + V K+DG    V V + A V +L+ A++  +  +  ++E     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 95  LCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV 125
           L     KL +D+  ++ +GIR+ D++ F+ ++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Tan0010837 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M+RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 80

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 81  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 140

Query: 121 MNRVA 126
           +NRVA
Sbjct: 141 VNRVA 145

[Close]

BLAST of Tan0010837 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M+RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 MNRVA 126
           +NRVA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Tan0010837 vs. NCBI nr
Match: KAG7021772.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-57
Identity = 108/125 (86.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124

Query: 121 MNRVA 126
           +NRVA
Sbjct: 125 VNRVA 129

[Close]

BLAST of Tan0010837 vs. NCBI nr
Match: XP_022927502.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata] >XP_022927511.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-57
Identity = 108/125 (86.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 MNRVA 126
           +NRVA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Tan0010837 vs. NCBI nr
Match: XP_022973901.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 106/125 (84.80%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGM M++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 MNRVA 126
           +NR+A
Sbjct: 121 VNRIA 125

[Close]

BLAST of Tan0010837 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 108/125 (86.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 MNRVA 126
           +NRVA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Tan0010837 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 106/125 (84.80%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V 
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            LR+AVESVFCGM M++EDVKISWPHVW HFCLCYKHYKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 MNRVA 126
           +NR+A
Sbjct: 121 VNRIA 125

[Close]

BLAST of Tan0010837 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-52
Identity = 100/121 (82.64%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M+ IEP  PDSCCISPRF SNSFRRSLRY RLPPQLLRLSVLKLDGSSFEVQV RTA V 
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            +RDAVESVFC MSM+KED  ISWPHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 M 122
           +
Sbjct: 121 V 121

[Close]

BLAST of Tan0010837 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 99/121 (81.82%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M++IEP  PDSCCISPRF +NSFRRSLRY RLPPQLLRLSVLKLDGSSFEVQV RTA V 
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            +RDAVESVFC MSM+KED  ISWPHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 M 122
           +
Sbjct: 124 V 124

[Close]

BLAST of Tan0010837 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 99/121 (81.82%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVE 60
           M++IEP  PDSCCISPRF +NSFRRSLRY RLPPQLLRLSVLKLDGSSFEVQV RTA V 
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  NLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHF 120
            +RDAVESVFC MSM+KED  ISWPHVWGHFCLCYKH+KL+DDKS I+ FGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 M 122
           +
Sbjct: 124 V 124

[Close]

BLAST of Tan0010837 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-24
Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 4   IEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQ-LLRLSVLKLDGSSFEVQVARTAKVENL 63
           I+P F  S  ++    S S RRS  Y +LPPQ  ++LSV+KL+GS F+V+VA+   V  L
Sbjct: 21  IDPRFLSSFALNDG-GSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAEL 80

Query: 64  RDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMN 123
           + AVE VF    ++   + ISW HVWGHFCLCY+  +L++DK+ I+  G+ DGDQLHF+ 
Sbjct: 81  KRAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVR 140

Query: 124 RVA 126
            ++
Sbjct: 141 HLS 140

[Close]

BLAST of Tan0010837 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-23
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 24  RRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKIS 83
           RRS  Y ++P + ++L+VLKLDGSSF +QV +TA V  L+ AVE+ F  + +     KIS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 84  WPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRVA 126
           WPHVWG FCL Y+  +LI++   +  FGI+DGDQL F+  ++
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 125

[Close]

BLAST of Tan0010837 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-23
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 24  RRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKIS 83
           RR+  Y +LP + +RLSVLKLDGSSF+V V  +A V +L+ A+E+ F  +   K   KIS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 84  WPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRVA 126
           W HVWGHFCLC+   KLI D   I  +G++DGD++ F N V+
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVS 106

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BLAST of Tan0010837 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-18
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 32  LPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHF 91
           +P + ++L+VLKLDGSSF   V +TA V  L+ AVE+ F  + +     KISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 92  CLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRVA 126
           CL Y+  +LI++   +  FGI+DGDQL F+  ++
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 90

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BLAST of Tan0010837 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.3e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVK-ISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +A +++L+  ++     M       + ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHYKLIDDKSDIKRFGIRDGDQLHFM 122
            + KL+DD + ++  GIR+  Q+ FM
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of Tan0010837 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.3e-10	39.53	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	1.7e-05	28.26	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	2.2e-05	28.26	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	2.8e-05	28.26	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Tan0010837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531556.1	4.0e-57	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_023531557.1	4.0e-57	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]
KAG7021772.1	6.8e-57	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_022927502.1	6.8e-57	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]...	[more]
XP_022973901.1	4.4e-56	84.80	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]	[more]

BLAST of Tan0010837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHC7	3.3e-57	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A6J1I9W9	2.1e-56	84.80	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]
A0A0A0LT94	1.9e-52	82.64	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	3.2e-52	81.82	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	3.2e-52	81.82	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]

BLAST of Tan0010837 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	4.8e-24	46.34	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	2.4e-23	48.04	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	3.1e-23	50.00	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	1.0e-18	46.81	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	9.3e-12	39.53	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 37..118 e-value: 1.3E-22 score: 79.6
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 37..118 e-value: 1.05982E-31 score: 105.678
None	No IPR available	GENE3D	3.10.20.90		coord: 33..122 e-value: 4.4E-28 score: 99.1
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 8..118
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 8..118
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 33..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010837.1	Tan0010837.1	mRNA
Tan0010837.2	Tan0010837.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005689	U12-type spliceosomal complex