Tan0010832 (gene) Snake gourd v1

Overview


Name	Tan0010832
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	LG01: 26127964 .. 26132153 (+)
RNA-Seq Expression	Tan0010832
Synteny	Tan0010832

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACAACCAAGTATGGCGCGAGTTGAGTCTCGATATGAAAATTTCTAGCTCCGCTCCCGACATTATTATAAGGGTTTTTTTTTTTTTGGTAAAAAAAATCTTACAAAAATCCTAGGTATGAATTGAGAGAGGTCACCATTTATATCCATGGCTTTAAAATAAACGCACCTGCCTTATCCAATACTCGAAAACCGAAACAATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAATACACTTCTTCTTCTTCACCATCGCCATCTTCTTCTTCTTTTTTCTCAAAATTGTCCTTCAATAAGCTTCCCTCCGCCATTAAGCTTCGCATTTCTTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACCTCCGCCATTTCCCCTCTTTCCATTTTTCTCTCCAATCCATCGCCAAATCGCGGCGGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTACCGAGGAAAATCAGGATGTGAACCAGAAGAAAAAGTTGTACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTTGCTGATGTTGAGGTTCTCCTTCTTCATCTTTTTTTTTTTTTTTGGGTGTGAATGTCTCTGTATCTGATGGGTTTTTCTTGTTGGGATGTGTTTTGTTTTAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGTAGGTTTTCTTATTATACTTGTTTCTGCTCACTTTCTGTTTGATTGTTTGCCCAAATGAATTCTACCAATAGCTTGTTTGGTTTGGTTCTGAAATTGTTCATTTATTCAATGAAATCCATATTTCAAGATGACTTGCAGGTTATAGTACTCTTAGTAAACGCTTAAAAACTACTTTTAGAATTTTGAAAGAGTTCCTTTTTTTTTTTTGACAATTTCTAACTCTAGGACGTTTAGTTGTGTCAGTGAACTCATATGATTTTAATATTTTAGGTAAGTGGTCATTATAGGCTTTGAACTCATTCCTTTTGCTTTTTCACATGCTTCAGTGCAATTAGGCCAGTCAATAGAGTTCAAAAGTTTTTTTTTTTTTTTTTGGATAAGAAACAATTTCGTTGATGTGTGAAAGTTAAAGAAATGGAATAAAGAAAGCCCTAAATTGAAGGAGTTACCATTAATCAGAAGTTGTTTTTTGATTATGTAATTTAATTAATCAAAAGAAAATTTCATTTTTGTTTTCCTCAAGGCTTAGTGACCTCGAAACTCTATACTTTTGAGTTTATGAATTCAAGTTATATTGGTCACTTACTTAGAATATTAATACTTTATAAGTTCTTTGATGACAAATTTTATAGGGTTAAATGGTTGTCCCATAGAATTAATTCAACTACATATAAGCTAGCGCAAACATCCATAGTTTTTTTTTTTATGAGAAACATGTGATTTCATTTCATTGATGATATGAAATGTACGAAAAGGGCTATGATACCCAATTATAAAAGAGAGTCCCAACTATTGATAAGAGAAGTGAGACTATAAGCACAAAAACAAGAAGAGAATTTACACCAAGAAAGAGCTAAATATATAATATGATCGAAGATTTGTTGAAACTTCCAAGCTGCATCTTGGAATATTATATTGTTGCACTCTAACCAAATGGACCATAAGAGAGCTTTAACAAACTTATATAAGGTCCATTTTTTTAACAAAAAAAAGGTCCATTTTTCTTTTATAATAAACTTATATAACTTCATCCAGAAAAGAAAGGTAACGACCTAAGGGCTAGGTAGAAAAGATCCCTCCCTGTCTAATGAAGAAAAGATTTCCAATCTTCTTTGTATATCAAGTTTATAGTCCAAATAGGAGTTGTCCCTCTATCTTGGAGATATTGGTTAAAGATGATTAGTTCTATCTAATCTTGAGGTCACAAGTTTAAATCCCTTTATCATGTAACATAGAACCAACAAAGATGATATCTCCATTATTAATGTTTAATTGTTAGACTATATTCAAATTTTTGGCGTAGAGAAAGTTAAAACAAGTCCTAAAAAAACTCAGGTTATTATACCTACTTTTTTTTCTTTTTTTCTTTTTTTTGAGTTCAACATGTGGAGGTGGAAGGATTCAAACCTCTGATCTTTTGGTTGAGAGCATATGCGTAAACTAGTTGAGCTATACTCAAGTCTCATAACTACTTCCTATTATGGCATACATTTTAGTCATTTTGCTTTACATTGGTTCTATATGCACAACTACTTCCTATATTAAACATACATATCTAGGTCATGTTAATATGTTTATGAAAACATGTATTTCTTATTGGAAATGTTGTGCTATAGGAAATATCAGGAAGAGTTATACAGGTAGAGTTTGCAAAGAGACTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAATTCTTTTCTGAAAGCTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGATATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCTTTGGAGGGGAAGGTAATTTACTTGCTCAGATCCTTCCTGTTGATTGATAAAGTTGTGTGATTGAGTGTGATTTAATCTGTGGTTTGTTCATGTTTGAATTAACACTCCCGAAAAGATGAAAACTTGAATTAATGCATATCTTTTTAGTATTATTTGATCATAATCTGAAAAATAACTTAGGATGAGTTTGACATGCCTACTAATTTAAACACTTTCTAAAAAAATATGTTTTTTTTTCAACTTTTTTCATTCCAATGATTTTAATTTGAAGACTTGTGTGTTTGATTACATCTTCTCAAAAGTGATTCTACAAATGTCAAACTACCCTAAAGAACATAAAGAGAAGAGGACAAGGGGAGGAATAAGTTGTCCAAGAGGAGAAGCTTTAAATTTGAGGGCAATTTTGTAGTTTCAACATTATTTGAATTTTCTTCATTTGGATTTTGGAATTGTTTAATGTGAAGATAAAAAAACAATGATTTTAAAGTGATTGGTCGAGAATCGGTTTAGAATCACTTTAGAATCATTTTTTTTATAATCACCTTTATTGAGAGAATGATTATTAACCAATCTAATTATTTTAAAAGTAATTACTTTTTTGTTGTCAAACCCTCTAGATATTTTTTAAAACATTTTTGGTCTATAATCACTCACAAAGTTAATCCTAACACACTCGTAGTACCATGATACATTTTGGCTCCTACTAAGATTTTCCAAGCCCATCCTTTCATGATAGAAAATTAAGATTTTATTTTTATTTCAAAGGTTGCCGTGGACTAGAGTTGAGCAGTCAAGTGTATATTTGATATAATTCACTTTTACCCTAAGTTATAGGCTTGTTAATCTCATTTACTACCTAAATTCAAACTAAGGGGTTGTTTTTTTTTTGAGACGTTGAATGGGTAATAATAGTCTATGAAGTTATATAATTTGTATTTAGAATGTAGAGTTATTTAGTTTGGGTTATAATAGTTTGTGTTTAGAGTGTAGAGCATTCCATAAACTATTATAACACAAGTTATTATAACATCCACCCCAAACAAGATTATAATAGTTTGTGTTTTATTTCATTCATTGCTTTTACATATTTGAAATGCTTAACTCTCTCTCTCTCCCCCACAGGAATTAATGGGAAGACCACTCCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACATTGTTGAAAGCCAAACAGAAGAATCATAGATCCAACTCTGATTCATTGCTTGGTAGAAAACTCAGAACCCCAAGATATTGATTGAGATTTTCTGGTCCTATCATCTGTACATCTTACAGCTTTTTTTTGTAGCATCATATAATATTATCTGTTACCTTAAATTTCTTAATCAAGTTCCTATGGACTCTTTTGTTTTGTCTCAAAAAAATTTCTTCTCTTGGTGTTACGTTAATGTCAATTGTACTATTTTGATGCTAGGTACCTCTGTAGCAAGTAGCAGCAATTGATGATTAAGAGAACTTATGTTGTCGT

mRNA sequence

CCACAACCAAGTATGGCGCGAGTTGAGTCTCGATATGAAAATTTCTAGCTCCGCTCCCGACATTATTATAAGGGTTTTTTTTTTTTTGGTAAAAAAAATCTTACAAAAATCCTAGGTATGAATTGAGAGAGGTCACCATTTATATCCATGGCTTTAAAATAAACGCACCTGCCTTATCCAATACTCGAAAACCGAAACAATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAATACACTTCTTCTTCTTCACCATCGCCATCTTCTTCTTCTTTTTTCTCAAAATTGTCCTTCAATAAGCTTCCCTCCGCCATTAAGCTTCGCATTTCTTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACCTCCGCCATTTCCCCTCTTTCCATTTTTCTCTCCAATCCATCGCCAAATCGCGGCGGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTACCGAGGAAAATCAGGATGTGAACCAGAAGAAAAAGTTGTACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTTGCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGAAATATCAGGAAGAGTTATACAGGTAGAGTTTGCAAAGAGACTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAATTCTTTTCTGAAAGCTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGATATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCTTTGGAGGGGAAGGAATTAATGGGAAGACCACTCCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACATTGTTGAAAGCCAAACAGAAGAATCATAGATCCAACTCTGATTCATTGCTTGGTAGAAAACTCAGAACCCCAAGATATTGATTGAGATTTTCTGGTCCTATCATCTGTACATCTTACAGCTTTTTTTTGTAGCATCATATAATATTATCTGTTACCTTAAATTTCTTAATCAAGTTCCTATGGACTCTTTTGTTTTGTCTCAAAAAAATTTCTTCTCTTGGTGTTACGTTAATGTCAATTGTACTATTTTGATGCTAGGTACCTCTGTAGCAAGTAGCAGCAATTGATGATTAAGAGAACTTATGTTGTCGT

Coding sequence (CDS)

ATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAATACACTTCTTCTTCTTCACCATCGCCATCTTCTTCTTCTTTTTTCTCAAAATTGTCCTTCAATAAGCTTCCCTCCGCCATTAAGCTTCGCATTTCTTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACCTCCGCCATTTCCCCTCTTTCCATTTTTCTCTCCAATCCATCGCCAAATCGCGGCGGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTACCGAGGAAAATCAGGATGTGAACCAGAAGAAAAAGTTGTACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTTGCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGAAATATCAGGAAGAGTTATACAGGTAGAGTTTGCAAAGAGACTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAATTCTTTTCTGAAAGCTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGATATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCTTTGGAGGGGAAGGAATTAATGGGAAGACCACTCCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACATTGTTGAAAGCCAAACAGAAGAATCATAG

Protein sequence

MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAISPLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES

Homology

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BLAST of Tan0010832 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.0e-30
Identity = 93/269 (34.57%), Postives = 148/269 (55.02%), Query Frame = 0


Query: 47  SSPLLSLNPTSAISPLSIFLSNPSPNRGGGGRLCSAVQEVSLEE---ATEENQDVNQKK- 106
           S+ L +  P S++   SIFLS  +    G       VQE   EE   + EE +++ +K+ 
Sbjct: 49  STKLKAHFPISSLYRSSIFLSTCASVSDG----VEVVQEDDEEEVALSAEEEEEIEEKEE 108

Query: 107 ----------KLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQK-NGRSRGFAFVTMAS 166
                     +LY+ NLP+S +   + E+F + GTVA+VEI+  +   RSRGFAFVTM S
Sbjct: 109 RVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGS 168

Query: 167 PDEAQAAIEKFNSQEISGRVIQVEF------AKRLKKPPPPRPPGPPPGETVNKLYVSNL 226
            +EA+ AI  F+  ++ GR ++V F       +R       R       ++ +KLYV+NL
Sbjct: 169 VEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANL 228

Query: 227 AWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELM 286
           +W + S  LR+ F++    ++A+V++D  SGRS G+GF++F++ E   +AL ++   EL 
Sbjct: 229 SWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELE 288

Query: 287 GRPLRLKFSERNVNESETPKQDIVESQTE 295
           GRPLRL  + +    S  P   +VE+  E
Sbjct: 289 GRPLRLNVAGQKAPVSSPP---VVETSPE 310

[Close]

BLAST of Tan0010832 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 71/192 (36.98%), Postives = 115/192 (59.90%), Query Frame = 0


Query: 85  EVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKN-GRSRG 144
           EV  +E  EE Q+  +  KL++ NLP+      +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 145 FAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVS 204
           F FVTM++ +EA+ A+E +N  +++GR++ V  A R +   P RP  P   E   ++YV 
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPERP--PRTFEQSYRIYVG 238

Query: 205 NLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKE 264
           N+ W +  + L + FSE    ++ARVV+D  +GRS G+GFV+ A+  E   A+++L+G+ 
Sbjct: 239 NIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQS 298

Query: 265 LMGRPLRLKFSE 276
           L GR +R+  +E
Sbjct: 299 LDGRTIRVNVAE 307

[Close]

BLAST of Tan0010832 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-28
Identity = 98/286 (34.27%), Postives = 149/286 (52.10%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKL-PSAIKLRISFSSPLLSLNPTSAI 60
           MA+  S++  +S  T  + P P  +S  + LSF  L PS++ L +S SS   S      +
Sbjct: 1   MASSASSLHFLS-LTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKV 60

Query: 61  SPLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIK 120
           + LS F        G              ++  EE ++ +   K+++ NLP+S     + 
Sbjct: 61  T-LSDFDQIEDVEDG--------------DDGVEEERNFSPDLKIFVGNLPFSADSAALA 120

Query: 121 ELFGQCGTVADVEIIKQK-NGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAK 180
           ELF + G V  VE+I  K  GRSRGF FVTM+S +E +AA ++FN  E+ GR ++V    
Sbjct: 121 ELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--- 180

Query: 181 RLKKPPPPR---------PPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARV 240
               PPP +           G    ++ N++YV NLAW V    L   FSE    + A+V
Sbjct: 181 --SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKV 240

Query: 241 VFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 276
           V+D  SGRS G+GFV++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 241 VYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of Tan0010832 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.6e-28
Identity = 97/328 (29.57%), Postives = 167/328 (50.91%), Query Frame = 0


Query: 2   ATLESAIPIISQYTSSSSPSPS---SSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSA 61
           A   SA+ + +  T+SS+ + +   SS   S+L +   P + KL  +  +PL+     S 
Sbjct: 4   AYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLIL---HSN 63

Query: 62  ISPLSIFLSNPSPNRGGGGRLCSAVQEVS--LEEATEENQDVNQKK----------KLYI 121
           I     F +  +        + ++V+E     EE  E  ++V ++K          +LY+
Sbjct: 64  IRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYV 123

Query: 122 FNLPWSFSVVDIKELFGQCGTVADVEIIKQK-NGRSRGFAFVTMASPDEAQAAIEKFNSQ 181
            NLP++ +  ++ ++FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A++ FNS 
Sbjct: 124 GNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSS 183

Query: 182 EISGRVIQVEFAKRLKKPPPPRPPGPPPGE-----------------TVNKLYVSNLAWK 241
           +I GR ++V F           P  P  GE                 + +K+Y  NL W 
Sbjct: 184 QIGGRTVKVNF-----------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWN 243

Query: 242 VRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRP 297
           + S  L++ F +    + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR 
Sbjct: 244 LTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRA 303

[Close]

BLAST of Tan0010832 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-28
Identity = 91/262 (34.73%), Postives = 134/262 (51.15%), Query Frame = 0


Query: 50  LLSLNPTSAISPLSIF--------LSNPSPNRGGGGRLCSAVQEVSL------------E 109
           LL   PTS  + LS F        LS  SP+     R    V++V+L            +
Sbjct: 18  LLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSCFSSRF---VRKVTLPDFDQIEDVEDGD 77

Query: 110 EATEENQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQK-NGRSRGFAFVT 169
           E  EE ++ +   K+++ NL +S     + ELF + G V  VE+I  K  GRSRGF FVT
Sbjct: 78  EGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVT 137

Query: 170 MASPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPR---------------PPGPPP 229
           M+S +E +AA ++FN  E+ GR ++V        PPP +                 G   
Sbjct: 138 MSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRENSSFRGGSRGGGS 197

Query: 230 GETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAE 276
            ++ N++YV NLAW V    L   FSE    + A+VV+D  SGRS G+GFV++++ EE  
Sbjct: 198 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 257

[Close]

BLAST of Tan0010832 vs. NCBI nr
Match: XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 493.0 bits (1268), Expect = 1.7e-135
Identity = 261/296 (88.18%), Postives = 280/296 (94.59%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESAIPIISQY +SSS S SSSS  SKLSF+KLPSAIKLRISFSSPLLSLNPT+A+S
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSS--SKLSFHKLPSAIKLRISFSSPLLSLNPTTAVS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           PL +FL+NP  NRGGG R CSAVQEVSLEEA+EENQDVNQK+KLYIFNLPWSFSVVDIKE
Sbjct: 61  PLPLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
            FGQCGTV DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 QFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLREFFSE+FNPIAARVVFDSPSG+SAG
Sbjct: 181 KKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPK+D VESQ EES
Sbjct: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Tan0010832 vs. NCBI nr
Match: KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 491.1 bits (1263), Expect = 6.6e-135
Identity = 259/296 (87.50%), Postives = 276/296 (93.24%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESAIPIISQY SSSS         SKLSF+KLPSAIKLRISFSSPLLSLNPT+A+S
Sbjct: 1   MATLESAIPIISQYISSSS---------SKLSFHKLPSAIKLRISFSSPLLSLNPTTAVS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           PL +FL+NPS NRGGGGR CSAVQEVSLEEA+EENQDVNQK+KLYIFNLPWSFSVVDIKE
Sbjct: 61  PLPLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
            FGQCGTV DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 HFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLREFFSE+FNPIAARVVFDSPSG+SAG
Sbjct: 181 KKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEAETALSSLEGKELMGRPLRLKFSER V +SETPK+D VESQ EES
Sbjct: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287

[Close]

BLAST of Tan0010832 vs. NCBI nr
Match: XP_022923294.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 485.0 bits (1247), Expect = 4.8e-133
Identity = 256/296 (86.49%), Postives = 272/296 (91.89%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESAIPIISQY SSSS         SKLS   LPSAIKLRISFSSPLLS NPT+A+S
Sbjct: 1   MATLESAIPIISQYISSSSS--------SKLSIRTLPSAIKLRISFSSPLLSFNPTTAVS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           PL +FL+NPS NRGGGGR CSAVQEVSLEEA+EENQDVNQK+KLYIFNLPWSFSVVDIKE
Sbjct: 61  PLPLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
            FGQCGTV DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 QFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLREFFSE+FNPIAARVVFDSPSG+SAG
Sbjct: 181 KKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEAETALSSLEGKELMGRPLRLKFSER V +SETPK+D VESQ EES
Sbjct: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Tan0010832 vs. NCBI nr
Match: XP_023551853.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 483.8 bits (1244), Expect = 1.1e-132
Identity = 258/296 (87.16%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESAIPIISQY SSSS S SS    SKLSF  LPSAIKLRIS SSPLLSLNPT+A+S
Sbjct: 1   MATLESAIPIISQYISSSSSSSSS----SKLSFRTLPSAIKLRISSSSPLLSLNPTTAVS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           PL +FL+NPS NRGGGGR  SAVQEVSLEEA+EENQDVNQK+KLYIFNLPWSFSVVDIKE
Sbjct: 61  PLPLFLTNPSRNRGGGGRFGSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
            FGQCGTV DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 QFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLREFFSE+FNPIAARVVFDSPSG+SAG
Sbjct: 181 KKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETP +D VESQ EES
Sbjct: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPTEDTVESQPEES 292

[Close]

BLAST of Tan0010832 vs. NCBI nr
Match: XP_008448669.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 479.9 bits (1234), Expect = 1.5e-131
Identity = 257/296 (86.82%), Postives = 271/296 (91.55%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESA+PIIS Y SSSS         SKL FNKLPSAIKLRISFSSPLLSLNP + IS
Sbjct: 1   MATLESALPIISPYVSSSSS--------SKLCFNKLPSAIKLRISFSSPLLSLNPPTPIS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           P+S    N S N GGGGRLCSAVQEVSLEEA+EE QDVNQKKKLYIFNLPWS SVVDIKE
Sbjct: 61  PISF---NSSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
           LFGQCGTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKR 
Sbjct: 121 LFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRF 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           K+PPPP+PPGPPPGETVNKLYVSNLAWKVRSSNLR+FFSESFNPIAARVVFDSPSGRSAG
Sbjct: 181 KRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEA+TALSSLEGKELMGRPLRLKFSER+VNESETPK+DIVESQ EES
Sbjct: 241 YGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Tan0010832 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 8.5e-136
Identity = 261/296 (88.18%), Postives = 280/296 (94.59%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESAIPIISQY +SSS S SSSS  SKLSF+KLPSAIKLRISFSSPLLSLNPT+A+S
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSS--SKLSFHKLPSAIKLRISFSSPLLSLNPTTAVS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           PL +FL+NP  NRGGG R CSAVQEVSLEEA+EENQDVNQK+KLYIFNLPWSFSVVDIKE
Sbjct: 61  PLPLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
            FGQCGTV DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 QFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLREFFSE+FNPIAARVVFDSPSG+SAG
Sbjct: 181 KKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPK+D VESQ EES
Sbjct: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Tan0010832 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.3e-133
Identity = 256/296 (86.49%), Postives = 272/296 (91.89%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESAIPIISQY SSSS         SKLS   LPSAIKLRISFSSPLLS NPT+A+S
Sbjct: 1   MATLESAIPIISQYISSSSS--------SKLSIRTLPSAIKLRISFSSPLLSFNPTTAVS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           PL +FL+NPS NRGGGGR CSAVQEVSLEEA+EENQDVNQK+KLYIFNLPWSFSVVDIKE
Sbjct: 61  PLPLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
            FGQCGTV DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 QFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLREFFSE+FNPIAARVVFDSPSG+SAG
Sbjct: 181 KKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEAETALSSLEGKELMGRPLRLKFSER V +SETPK+D VESQ EES
Sbjct: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Tan0010832 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 7.4e-132
Identity = 257/296 (86.82%), Postives = 271/296 (91.55%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESA+PIIS Y SSSS         SKL FNKLPSAIKLRISFSSPLLSLNP + IS
Sbjct: 1   MATLESALPIISPYVSSSSS--------SKLCFNKLPSAIKLRISFSSPLLSLNPPTPIS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           P+S    N S N GGGGRLCSAVQEVSLEEA+EE QDVNQKKKLYIFNLPWS SVVDIKE
Sbjct: 61  PISF---NSSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
           LFGQCGTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKR 
Sbjct: 121 LFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRF 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           K+PPPP+PPGPPPGETVNKLYVSNLAWKVRSSNLR+FFSESFNPIAARVVFDSPSGRSAG
Sbjct: 181 KRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEA+TALSSLEGKELMGRPLRLKFSER+VNESETPK+DIVESQ EES
Sbjct: 241 YGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Tan0010832 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.1e-130
Identity = 253/296 (85.47%), Postives = 272/296 (91.89%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           M T+ES +PIIS Y SS     SSSS  SKL FNKLPS IKLRISFSSPLLSLNPT+ IS
Sbjct: 1   MVTIESPLPIISPYISS-----SSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPIS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           P S    N S NRGGG RLCSA+QEV+LEEA+EENQDVNQK+KLYIFNLPWS SVVDIKE
Sbjct: 61  PTSF---NSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
           LFGQCGTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKRL
Sbjct: 121 LFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRL 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           KKPPPP+PPGPPPGETVNKLYVSNLAWKVRS+NLR+FFSE+FNPIAARVVFDSP+GRSAG
Sbjct: 181 KKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEA+TALSSLEGKELMGRPLRLKFSERNVNE+ETPK+DIVESQ EES
Sbjct: 241 YGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of Tan0010832 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.6e-129
Identity = 255/296 (86.15%), Postives = 269/296 (90.88%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAIS 60
           MATLESA+PIIS Y SSSS         SKL FNKLPSAIKLRISFSSPLLSLNP + IS
Sbjct: 1   MATLESALPIISPYVSSSSS--------SKLCFNKLPSAIKLRISFSSPLLSLNPPTPIS 60

Query: 61  PLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKE 120
           P+S    N S N GGGGRLCSAVQEVSLEEA+EE QDVNQKKKLYIFNLPWS SVVDIKE
Sbjct: 61  PISF---NSSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKE 120

Query: 121 LFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRL 180
           LFGQCGTV+D  IIKQKNGRSRGFAFVTMASPDEAQAAI+KF+SQEISGRVI+VEFAKR 
Sbjct: 121 LFGQCGTVSD--IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRF 180

Query: 181 KKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAG 240
           K+PPPP+PPGPPPGETVNKLYVSNLAWKVRSSNLR+FFSESFNPIAARVVFDSPSGRSAG
Sbjct: 181 KRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAG 240

Query: 241 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 297
           YGFVSFATREEA+TALSSLEGKELMGRPLRLKFSER+VNESETPK+DIVESQ EES
Sbjct: 241 YGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of Tan0010832 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-73
Identity = 163/289 (56.40%), Postives = 207/289 (71.63%), Query Frame = 0


Query: 1   MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRI-SFSSPLLSLNPTSAI 60
           MA LE+++ I S  +SSSS  P     FSK S +   +A+ LRI S  SP+ SL   S  
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKP---YLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDN 60

Query: 61  SP--LSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVD 120
           S   +S+  S          +  SA +E S EE TEE Q+ N K+KL++FNLPWS SV D
Sbjct: 61  SRRLVSVLCSVAE-------KETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVND 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFA 180
           I ELFGQCGTV +VEII+QK+G++RGFAFVTMAS +EAQAAI+KF++ ++SGR+I V FA
Sbjct: 121 ISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 180

Query: 181 KRLKKPPPPRP---PGPPPGETVNKLYVSNLAWKVRSSNLREFFSES-FNPIAARVVFDS 240
           +R KKP P  P   P P PG+T +KLYVSNLAWK RS++LRE F+ + FNP++ARVVF  
Sbjct: 181 RRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFAD 240

Query: 241 PSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESE 283
           P GRS+GYGFVSFATREEAE A++ L GKE+MGRP+ LKFS R+ +ESE
Sbjct: 241 PEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE 279

[Close]

BLAST of Tan0010832 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-32
Identity = 93/264 (35.23%), Postives = 145/264 (54.92%), Query Frame = 0


Query: 44  ISFSSPLLSLNPTSAISPLSIFLSNPSPNRGGGGRLCSAVQEVSLE------EATEENQD 103
           +S S+P L      A  P SI    P+ +R       +  QE  LE       A E  ++
Sbjct: 34  LSLSTPSLCRLHRHATFPDSI----PAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEE 93

Query: 104 VNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQA 163
              K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  
Sbjct: 94  EISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAAT 153

Query: 164 AIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREF 223
           A++   S E  GR ++V++AK  KK        P P  T N L+V+NLA++ R+ +L+EF
Sbjct: 154 ALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEF 213

Query: 224 F-SESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----K 283
           F +++ N ++  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +
Sbjct: 214 FDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQ 273

Query: 284 FSERNVNESETPKQDIVESQTEES 297
           F +    E   P ++  E +  +S
Sbjct: 274 FVKLQAKEGLQPPEEEAEEEPSQS 292

[Close]

BLAST of Tan0010832 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-32
Identity = 77/201 (38.31%), Postives = 122/201 (60.70%), Query Frame = 0


Query: 101 KKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIE 160
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  A++
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 161 KFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFF-S 220
              S E  GR ++V++AK  KK        P P  T N L+V+NLA++ R+ +L+EFF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 221 ESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSE 280
           ++ N ++  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 281 RNVNESETPKQDIVESQTEES 297
               E   P ++  E +  +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of Tan0010832 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-29
Identity = 97/328 (29.57%), Postives = 167/328 (50.91%), Query Frame = 0


Query: 2   ATLESAIPIISQYTSSSSPSPS---SSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSA 61
           A   SA+ + +  T+SS+ + +   SS   S+L +   P + KL  +  +PL+     S 
Sbjct: 4   AYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLIL---HSN 63

Query: 62  ISPLSIFLSNPSPNRGGGGRLCSAVQEVS--LEEATEENQDVNQKK----------KLYI 121
           I     F +  +        + ++V+E     EE  E  ++V ++K          +LY+
Sbjct: 64  IRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYV 123

Query: 122 FNLPWSFSVVDIKELFGQCGTVADVEIIKQK-NGRSRGFAFVTMASPDEAQAAIEKFNSQ 181
            NLP++ +  ++ ++FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A++ FNS 
Sbjct: 124 GNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSS 183

Query: 182 EISGRVIQVEFAKRLKKPPPPRPPGPPPGE-----------------TVNKLYVSNLAWK 241
           +I GR ++V F           P  P  GE                 + +K+Y  NL W 
Sbjct: 184 QIGGRTVKVNF-----------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWN 243

Query: 242 VRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRP 297
           + S  L++ F +    + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR 
Sbjct: 244 LTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRA 303

[Close]

BLAST of Tan0010832 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-28
Identity = 83/226 (36.73%), Postives = 124/226 (54.87%), Query Frame = 0


Query: 60  SPLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQD---------VNQKKKLYIFNLP 119
           +P  + +S+ S +R    R+ S    V LEE  EE  D              KLY  NLP
Sbjct: 38  TPKPLLISSRSCSR--RFRVLSETITVKLEE--EEKDDGASAVLDPPAAVNTKLYFGNLP 97

Query: 120 WSFSVVDIKELFGQCGTVADVEIIKQKN-GRSRGFAFVTMASPDEAQAAIEKFNSQEISG 179
           ++     + ++         VE++  ++ G+SRGFAFVTM++ ++    I+  +  E  G
Sbjct: 98  YNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLG 157

Query: 180 RVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARV 239
           R ++V FA    KP P + P  P  ET +KL+V NL+W V S +L   F E  + + ARV
Sbjct: 158 RALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARV 217

Query: 240 VFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 276
           VFD  +GRS GYGFV ++++ E ETAL SL+G EL GR +R+  ++
Sbjct: 218 VFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

The following BLAST results are available for this feature:

BLAST of Tan0010832 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	6.0e-30	34.57	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	1.1e-28	36.98	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08935	2.5e-28	34.27	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q39061	5.6e-28	29.57	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P49313	7.4e-28	34.73	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Tan0010832 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007582.1	1.7e-135	88.18	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]
KAG6577717.1	6.6e-135	87.50	hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923294.1	4.8e-133	86.49	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]
XP_023551853.1	1.1e-132	87.16	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_008448669.1	1.5e-131	86.82	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]

BLAST of Tan0010832 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZ42	8.5e-136	88.18	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]
A0A6J1E5Z7	2.3e-133	86.49	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3BK84	7.4e-132	86.82	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A0A0L1U2	1.1e-130	85.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A5A7UAR3	2.6e-129	86.15	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Tan0010832 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	1.6e-73	56.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	1.7e-32	35.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	3.9e-32	38.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	4.0e-29	29.57	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	4.4e-28	36.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 199..272 e-value: 1.4E-21 score: 87.7 coord: 103..175 e-value: 1.1E-26 score: 104.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 104..172 e-value: 3.7E-18 score: 65.1 coord: 200..270 e-value: 1.5E-17 score: 63.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 198..276 score: 17.983952
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 102..179 score: 19.211941
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 80..181 e-value: 1.6E-28 score: 101.6 coord: 182..286 e-value: 1.4E-23 score: 85.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..296
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 1..287
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..287
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 95..187
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 183..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010832.1	Tan0010832.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding