Tan0010732 (gene) Snake gourd v1

Overview


Name	Tan0010732
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	LG07: 5516932 .. 5517297 (-)
RNA-Seq Expression	Tan0010732
Synteny	Tan0010732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTAATGTTCTCAATTGCGATGCCAATCCCAAATTTAGTACATTTATATATCAATGTAATAAGGATGAATGTGAATGTACAAAGCTTTGAAGAAACGTCTATTCAATCAGTTGATCCTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCATGTGATGATGAAGATATGGTTACAAATAATACATATAAAGAGTTTAGAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTACCGAACATGATCCTATCCAAGAACCGTGA

mRNA sequence

ATGAACTTAATGTTCTCAATTGCGATGCCAATCCCAAATTTAGTACATTTATATATCAATGTAATAAGGATGAATGTGAATGTACAAAGCTTTGAAGAAACGTCTATTCAATCAGTTGATCCTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCATGTGATGATGAAGATATGGTTACAAATAATACATATAAAGAGTTTAGAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTACCGAACATGATCCTATCCAAGAACCGTGA

Coding sequence (CDS)

ATGAACTTAATGTTCTCAATTGCGATGCCAATCCCAAATTTAGTACATTTATATATCAATGTAATAAGGATGAATGTGAATGTACAAAGCTTTGAAGAAACGTCTATTCAATCAGTTGATCCTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCATGTGATGATGAAGATATGGTTACAAATAATACATATAAAGAGTTTAGAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTACCGAACATGATCCTATCCAAGAACCGTGA

Protein sequence

MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPIQEP

Homology

[Close]

BLAST of Tan0010732 vs. NCBI nr
Match: KAA0060519.1 (uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa] >TYK00759.1 uncharacterized protein E5676_scaffold420G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-17
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 9   MPIPNLVHLYINVIRMNVNVQSFEETSIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDM 68
           MPIPN+VHLY+NV RM +++    E   Q  D       +Q + PD +IV +   DDE+M
Sbjct: 1   MPIPNMVHLYVNVSRMGLDINMNSEPFGQLED------QTQVIVPDTEIVASSVYDDEEM 60

Query: 69  VTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPIQEP 122
           V NN Y +F+TETDDEFEE DF+   H++PSNT  +++ +V+D+  EHDPI  P
Sbjct: 61  VANNEYMDFQTETDDEFEEFDFDGREHELPSNTLTQINMDVIDSIREHDPIVSP 108

[Close]

BLAST of Tan0010732 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQ-SVDPSLGVESSQCLDPDPQIVG 60
           MN MFSIA+P PN+VHLY+ V        S  +T+I  +V+P       + +D +P+   
Sbjct: 43  MNTMFSIALPFPNMVHLYVTV--------SMVDTAINLNVEPRY---VEEYVDVEPESDA 102

Query: 61  TP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPI 120
            P C +E+MV  N Y EFRTETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPI 154

Query: 121 QEP 122
             P
Sbjct: 163 IVP 154

[Close]

BLAST of Tan0010732 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQ-SVDPSLGVESSQCLDPDPQIVG 60
           MN MFSIA+P PN+VHLY+ V        S  +T+I  +V+P       + +D +P+   
Sbjct: 43  MNTMFSIALPFPNMVHLYVTV--------SMVDTAINLNVEPRY---VEEYVDVEPESDA 102

Query: 61  TP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPI 120
            P C +E+MV  N Y EFRTETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPI 154

Query: 121 QEP 122
             P
Sbjct: 163 IVP 154

[Close]

BLAST of Tan0010732 vs. NCBI nr
Match: TYK01570.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-16
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQ-SVDPSLGVESSQCLDPDPQIVG 60
           MN MFS+A+P PN+VHLY+ V        S  +T I  +V+P       + +D +P+   
Sbjct: 1   MNTMFSVALPFPNMVHLYVTV--------SMVDTVINLNVEPRY---VEEYVDVEPESDA 60

Query: 61  TP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPI 120
            P C +E+MV  N Y EFRTETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 61  LPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPI 112

Query: 121 QEP 122
             P
Sbjct: 121 IVP 112

[Close]

BLAST of Tan0010732 vs. NCBI nr
Match: KAA0066696.1 (uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa] >TYK27846.1 uncharacterized protein E5676_scaffold384G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 9   MPIPNLVHLYINVIRMNVNVQSFEETSIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDM 68
           MPIPN+VHLY+NV R+ +++    E   Q  D       +Q + PD ++V +   DDE+M
Sbjct: 1   MPIPNMVHLYVNVSRVGLDINLNSEPFCQLED------RTQVIIPDSELVASSVYDDEEM 60

Query: 69  VTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPIQEP 122
           V NN Y +F+TE DDEFEE DF+   H++P NT  ++D +V+D+  EHDPI  P
Sbjct: 61  VANNEYMDFQTEIDDEFEEFDFDGREHELPLNTLTQIDMDVIDSIREHDPIVAP 108

[Close]

BLAST of Tan0010732 vs. ExPASy TrEMBL
Match: A0A5A7V456 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00210 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 9   MPIPNLVHLYINVIRMNVNVQSFEETSIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDM 68
           MPIPN+VHLY+NV RM +++    E   Q  D       +Q + PD +IV +   DDE+M
Sbjct: 1   MPIPNMVHLYVNVSRMGLDINMNSEPFGQLED------QTQVIVPDTEIVASSVYDDEEM 60

Query: 69  VTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPIQEP 122
           V NN Y +F+TETDDEFEE DF+   H++PSNT  +++ +V+D+  EHDPI  P
Sbjct: 61  VANNEYMDFQTETDDEFEEFDFDGREHELPSNTLTQINMDVIDSIREHDPIVSP 108

[Close]

BLAST of Tan0010732 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.2e-17
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQ-SVDPSLGVESSQCLDPDPQIVG 60
           MN MFSIA+P PN+VHLY+ V        S  +T+I  +V+P       + +D +P+   
Sbjct: 43  MNTMFSIALPFPNMVHLYVTV--------SMVDTAINLNVEPRY---VEEYVDVEPESDA 102

Query: 61  TP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPI 120
            P C +E+MV  N Y EFRTETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPI 154

Query: 121 QEP 122
             P
Sbjct: 163 IVP 154

[Close]

BLAST of Tan0010732 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.4e-17
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQ-SVDPSLGVESSQCLDPDPQIVG 60
           MN MFSIA+P PN+VHLY+ V        S  +T+I  +V+P       + +D +P+   
Sbjct: 43  MNTMFSIALPFPNMVHLYVTV--------SMVDTAINLNVEPRY---VEEYVDVEPESDA 102

Query: 61  TP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPI 120
            P C +E+MV  N Y EFRTETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPI 154

Query: 121 QEP 122
             P
Sbjct: 163 IVP 154

[Close]

BLAST of Tan0010732 vs. ExPASy TrEMBL
Match: A0A5D3BR52 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001490 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVIRMNVNVQSFEETSIQ-SVDPSLGVESSQCLDPDPQIVG 60
           MN MFS+A+P PN+VHLY+ V        S  +T I  +V+P       + +D +P+   
Sbjct: 1   MNTMFSVALPFPNMVHLYVTV--------SMVDTVINLNVEPRY---VEEYVDVEPESDA 60

Query: 61  TP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPI 120
            P C +E+MV  N Y EFRTETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 61  LPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPI 112

Query: 121 QEP 122
             P
Sbjct: 121 IVP 112

[Close]

BLAST of Tan0010732 vs. ExPASy TrEMBL
Match: A0A5D3DVS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00230 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-16
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 9   MPIPNLVHLYINVIRMNVNVQSFEETSIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDM 68
           MPIPN+VHLY+NV R+ +++    E   Q  D       +Q + PD ++V +   DDE+M
Sbjct: 1   MPIPNMVHLYVNVSRVGLDINLNSEPFCQLED------RTQVIIPDSELVASSVYDDEEM 60

Query: 69  VTNNTYKEFRTETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTTEHDPIQEP 122
           V NN Y +F+TE DDEFEE DF+   H++P NT  ++D +V+D+  EHDPI  P
Sbjct: 61  VANNEYMDFQTEIDDEFEEFDFDGREHELPLNTLTQIDMDVIDSIREHDPIVAP 108

The following BLAST results are available for this feature:

BLAST of Tan0010732 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010732 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060519.1	3.9e-17	47.37	uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0034014.1	1.5e-16	47.15	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	1.9e-16	47.15	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK01570.1	4.3e-16	46.34	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0066696.1	1.3e-15	44.74	uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of Tan0010732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V456	1.9e-17	47.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SS31	7.2e-17	47.15	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	9.4e-17	47.15	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BR52	2.1e-16	46.34	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DVS6	6.1e-16	44.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0010732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010732.1	Tan0010732.1	mRNA