Tan0010645 (gene) Snake gourd v1

Overview


Name	Tan0010645
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 6942206 .. 6942761 (-)
RNA-Seq Expression	Tan0010645
Synteny	Tan0010645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACAAAAAAACAAAAAAACAAAAAACAATTAAACCTCCCCCGTAGAGTTCAGAGAGAAGAGGGGTTTTTTAGATGGTGAGGGAATTAAGAGATTTGACCAGTGGCGGCGGCGGATTGATGATCGGTTCGACGGTTTTGATATTATGGGCGGCGGTGGTTTCAATTTCTGTTATCACAACGGTCATATTCTCCTGCACCGGCGGCGGCCCCAAAGATAAGGACACGTCACACCCCGACACTTACGGTGCTGCATGCGCAGCCGGCTGTGGCGCCGGATGCGGCGGTTGATTTCTACGCCTCCGCCGCAACTCAATCACGAGACGGCGGCGCGTCTCTGATCGGCTAACCGCAAAACAATTGCATGTAATCTTCCTCTATGTTTCTTTTATTCTTCTTTTTTTGGGAGATTTTGAGGATTTTTATTTTACTATTTTTAAATATGTAAAACAAATTACCATACTCGATAGCAATGGAAAAAAAAAGTGTACGTCTTTATCCATTTGTAGCTAAAAAAACAGTGGGTTCTCAAATTGCCACGTCATATTCTCAAG

mRNA sequence

AAAAAAACAAAAAAACAAAAAAACAAAAAACAATTAAACCTCCCCCGTAGAGTTCAGAGAGAAGAGGGGTTTTTTAGATGGTGAGGGAATTAAGAGATTTGACCAGTGGCGGCGGCGGATTGATGATCGGTTCGACGGTTTTGATATTATGGGCGGCGGTGGTTTCAATTTCTGTTATCACAACGGTCATATTCTCCTGCACCGGCGGCGGCCCCAAAGATAAGGACACGTCACACCCCGACACTTACGGTGCTGCATGCGCAGCCGGCTGTGGCGCCGGATGCGGCGGTTGATTTCTACGCCTCCGCCGCAACTCAATCACGAGACGGCGGCGCGTCTCTGATCGGCTAACCGCAAAACAATTGCATGTAATCTTCCTCTATGTTTCTTTTATTCTTCTTTTTTTGGGAGATTTTGAGGATTTTTATTTTACTATTTTTAAATATGTAAAACAAATTACCATACTCGATAGCAATGGAAAAAAAAAGTGTACGTCTTTATCCATTTGTAGCTAAAAAAACAGTGGGTTCTCAAATTGCCACGTCATATTCTCAAG

Coding sequence (CDS)

ATGGTGAGGGAATTAAGAGATTTGACCAGTGGCGGCGGCGGATTGATGATCGGTTCGACGGTTTTGATATTATGGGCGGCGGTGGTTTCAATTTCTGTTATCACAACGGTCATATTCTCCTGCACCGGCGGCGGCCCCAAAGATAAGGACACGTCACACCCCGACACTTACGGTGCTGCATGCGCAGCCGGCTGTGGCGCCGGATGCGGCGGTTGA

Protein sequence

MVRELRDLTSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDKDTSHPDTYGAACAAGCGAGCGG

Homology

[Close]

BLAST of Tan0010645 vs. NCBI nr
Match: KAG6601275.1 (hypothetical protein SDJN03_06508, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MVRELRDLT-SGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDKDTSHPDTYGA 60
          MVR LRD +  GGGG +   TVLILWAAVVSIS+I+TVIFSCTGGGPKDK +SH DTYGA
Sbjct: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGA 60

Query: 61 ACAAGCGAGCGG 72
          ACAAGCGAGCGG
Sbjct: 61 ACAAGCGAGCGG 72

[Close]

BLAST of Tan0010645 vs. NCBI nr
Match: KGN52107.1 (hypothetical protein Csa_007826 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 55/72 (76.39%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MVRELRDLTSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGG-GPKDKDTSHPDTY-G 60
          MVR LRD    GGGL I S VLI WA V+SIS+ITTVIFSCTGG G KDKDTSH DTY G
Sbjct: 1  MVRVLRDF--HGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGG 60

Query: 61 AACAAGCGAGCG 71
          AACAAGCG GCG
Sbjct: 61 AACAAGCGGGCG 70

[Close]

BLAST of Tan0010645 vs. NCBI nr
Match: KAA0034584.1 (hypothetical protein E6C27_scaffold65G006000 [Cucumis melo var. makuwa] >TYK09136.1 hypothetical protein E5676_scaffold475G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 53/72 (73.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1  MVRELRDLTSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGG-GPKDKDTSHPDTY-G 60
          MVR L D    GGGL I S V I WA VVSIS+ITTVIFSCTGG G KDKDTSH DT  G
Sbjct: 1  MVRVLADF--HGGGLTIASPVFIFWAVVVSISIITTVIFSCTGGSGAKDKDTSHADTCGG 60

Query: 61 AACAAGCGAGCG 71
          AACAAGCG GCG
Sbjct: 61 AACAAGCGGGCG 70

[Close]

BLAST of Tan0010645 vs. NCBI nr
Match: TXG57316.1 (hypothetical protein EZV62_018629 [Acer yangbiense])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MVRELRDL---TSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDKDTSHPDTY 60
          M RE +++    +GGGG   GS VL+ WAA+  +S+I+ ++FSC GG  KDKD++  D Y
Sbjct: 1  MAREWKEVIREDNGGGG---GSVVLLFWAALFILSIISVIVFSCAGGASKDKDSAGTDAY 60

Query: 61 GAACAAGCGAGCGG 72
          G  CAAGCGA CGG
Sbjct: 61 GTTCAAGCGAACGG 71

[Close]

BLAST of Tan0010645 vs. NCBI nr
Match: XP_018858755.1 (uncharacterized protein LOC109020691 [Juglans regia])

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1  MVRELRDLTSGGGG------LMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDKDT-SH 60
          MVRE ++   G GG        I S VLI W A+V +S+IT +IF+C  G  KDKD+ +H
Sbjct: 1  MVREWKEAARGDGGSNAESLSSISSAVLIFWGALVMLSLITAIIFACADGASKDKDSAAH 60

Query: 61 PDTYGAACAAGCGAGCGG 72
           +TYG ACAAGCG GCGG
Sbjct: 61 TNTYGTACAAGCGGGCGG 78

[Close]

BLAST of Tan0010645 vs. ExPASy TrEMBL
Match: A0A0A0KUK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 55/72 (76.39%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MVRELRDLTSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGG-GPKDKDTSHPDTY-G 60
          MVR LRD    GGGL I S VLI WA V+SIS+ITTVIFSCTGG G KDKDTSH DTY G
Sbjct: 1  MVRVLRDF--HGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGG 60

Query: 61 AACAAGCGAGCG 71
          AACAAGCG GCG
Sbjct: 61 AACAAGCGGGCG 70

[Close]

BLAST of Tan0010645 vs. ExPASy TrEMBL
Match: A0A5D3CFJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001270 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-15
Identity = 53/72 (73.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1  MVRELRDLTSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGG-GPKDKDTSHPDTY-G 60
          MVR L D    GGGL I S V I WA VVSIS+ITTVIFSCTGG G KDKDTSH DT  G
Sbjct: 1  MVRVLADF--HGGGLTIASPVFIFWAVVVSISIITTVIFSCTGGSGAKDKDTSHADTCGG 60

Query: 61 AACAAGCGAGCG 71
          AACAAGCG GCG
Sbjct: 61 AACAAGCGGGCG 70

[Close]

BLAST of Tan0010645 vs. ExPASy TrEMBL
Match: A0A5C7HLZ3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018629 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MVRELRDL---TSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDKDTSHPDTY 60
          M RE +++    +GGGG   GS VL+ WAA+  +S+I+ ++FSC GG  KDKD++  D Y
Sbjct: 1  MAREWKEVIREDNGGGG---GSVVLLFWAALFILSIISVIVFSCAGGASKDKDSAGTDAY 60

Query: 61 GAACAAGCGAGCGG 72
          G  CAAGCGA CGG
Sbjct: 61 GTTCAAGCGAACGG 71

[Close]

BLAST of Tan0010645 vs. ExPASy TrEMBL
Match: A0A2I4HRI7 (uncharacterized protein LOC109020691 OS=Juglans regia OX=51240 GN=LOC109020691 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1  MVRELRDLTSGGGG------LMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDKDT-SH 60
          MVRE ++   G GG        I S VLI W A+V +S+IT +IF+C  G  KDKD+ +H
Sbjct: 1  MVREWKEAARGDGGSNAESLSSISSAVLIFWGALVMLSLITAIIFACADGASKDKDSAAH 60

Query: 61 PDTYGAACAAGCGAGCGG 72
           +TYG ACAAGCG GCGG
Sbjct: 61 TNTYGTACAAGCGGGCGG 78

[Close]

BLAST of Tan0010645 vs. ExPASy TrEMBL
Match: A0A2C9UK82 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G106800 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.6e-10
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 6  RDLTSGGGGLMIGSTVLILWAAVVSISVITTVIFSCTGGGPKDK-DTSHPDTYGAACAAG 65
          ++   GGG    G  +L+ WAA++++S++T ++FSC GG  KDK   +H DTYGA CAAG
Sbjct: 6  KEAIRGGGRSGGGEALLLCWAALITLSILTAIVFSCAGGASKDKASATHTDTYGATCAAG 65

Query: 66 CGAGCGG 72
          CGA CGG
Sbjct: 66 CGAACGG 72

[Close]

BLAST of Tan0010645 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 18 GSTVLILWAAVVSISVITTVIFSCTGGGPKDKDTSHPDTYGAACAAGCGAGCGG 72
          G   L +WAAVV+ SVI  VIFSC+      K  ++ D  G++CAAGCG GCGG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRA--SKPHTNDDVNGSSCAAGCGGGCGG 65

The following BLAST results are available for this feature:

BLAST of Tan0010645 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010645 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601275.1	1.0e-20	79.17	hypothetical protein SDJN03_06508, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN52107.1	2.5e-16	76.39	hypothetical protein Csa_007826 [Cucumis sativus]	[more]
KAA0034584.1	1.8e-14	73.61	hypothetical protein E6C27_scaffold65G006000 [Cucumis melo var. makuwa] >TYK0913...	[more]
TXG57316.1	2.1e-10	51.35	hypothetical protein EZV62_018629 [Acer yangbiense]	[more]
XP_018858755.1	2.7e-10	52.56	uncharacterized protein LOC109020691 [Juglans regia]	[more]

BLAST of Tan0010645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUK0	1.2e-16	76.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610410 PE=4 SV=1	[more]
A0A5D3CFJ4	8.8e-15	73.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5C7HLZ3	1.0e-10	51.35	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018629 PE=4 SV=1	[more]
A0A2I4HRI7	1.3e-10	52.56	uncharacterized protein LOC109020691 OS=Juglans regia OX=51240 GN=LOC109020691 P...	[more]
A0A2C9UK82	8.6e-10	50.75	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G106800 PE=4 SV=...	[more]

BLAST of Tan0010645 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	6.7e-07	51.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010645.1	Tan0010645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane