Tan0010608 (gene) Snake gourd v1

Overview
NameTan0010608
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 71932556 .. 71933031 (+)
RNA-Seq ExpressionTan0010608
SyntenyTan0010608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGTTTCTCTTTCTCTGTTTCCCCCCTTCTTCACCATTCCCAAATCCACACTCTCAATTCTCAAATCTCCGCCGGAAAATGTCCCAGCGACAGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGATTACCTCTCTGAACCGCCTTCCTCGGTCGGACCGACCTCGGTGGTTGAATCCGCCGGTCCCCACTCGTCTCGTCCGCCGCAGCAGAGCCGTACCGCTGATCCGTCGGCGGCAAGGCCTCCTGCCCCGGCGGCGTCGAATGAAGCTCCGAATCCGGCGAGCTAGCGGACCTAACGCAGTGATTCGACGCGTCGTTTTGTTCGATCGGAAGATGAAGATGAAGATGAAGTATGTTTTGTTTTCGATCTGTCGTTTCGTTTTATCGTTTTTCTTTTTTTTTTGTAAGATTTGATTTTATCGTTTTTCTTATCTCACAGAAATTGTGGGGAAATTTGCA

mRNA sequence

CCTGTTTCTCTTTCTCTGTTTCCCCCCTTCTTCACCATTCCCAAATCCACACTCTCAATTCTCAAATCTCCGCCGGAAAATGTCCCAGCGACAGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGATTACCTCTCTGAACCGCCTTCCTCGGTCGGACCGACCTCGGTGGTTGAATCCGCCGGTCCCCACTCGTCTCGTCCGCCGCAGCAGAGCCGTACCGCTGATCCGTCGGCGGCAAGGCCTCCTGCCCCGGCGGCGTCGAATGAAGCTCCGAATCCGGCGAGCTAGCGGACCTAACGCAGTGATTCGACGCGTCGTTTTGTTCGATCGGAAGATGAAGATGAAGATGAAGTATGTTTTGTTTTCGATCTGTCGTTTCGTTTTATCGTTTTTCTTTTTTTTTTGTAAGATTTGATTTTATCGTTTTTCTTATCTCACAGAAATTGTGGGGAAATTTGCA

Coding sequence (CDS)

ATGTCCCAGCGACAGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGATTACCTCTCTGAACCGCCTTCCTCGGTCGGACCGACCTCGGTGGTTGAATCCGCCGGTCCCCACTCGTCTCGTCCGCCGCAGCAGAGCCGTACCGCTGATCCGTCGGCGGCAAGGCCTCCTGCCCCGGCGGCGTCGAATGAAGCTCCGAATCCGGCGAGCTAG

Protein sequence

MSQRQGRHQRRPSQGVFMAADYLSEPPSSVGPTSVVESAGPHSSRPPQQSRTADPSAARPPAPAASNEAPNPAS
Homology
BLAST of Tan0010608 vs. NCBI nr
Match: KAG6580559.1 (hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 1  MSQRQGRHQRRPSQGVFMAADYLSEPPSSVGPTSVVESAGPHSS---RPPQQSRTADPSA 60
          MSQRQGRHQRRPSQ VF+AADYLSEPP + GP S VE AGPHS+   RPPQQSR ADP+A
Sbjct: 1  MSQRQGRHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSAHLPRPPQQSRNADPAA 60

Query: 61 ARPPAPAASNEAPNPAS 75
           RPPAPAASNEAPNP +
Sbjct: 61 PRPPAPAASNEAPNPTN 77

BLAST of Tan0010608 vs. NCBI nr
Match: KAA0044076.1 (hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK25061.1 hypothetical protein E5676_scaffold352G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-18
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 1  MSQRQGRHQRRPSQGVFMAADYLSEPPSS--VGPTSVVESAGPHS---SRPPQQSRTADP 60
          MSQR GRHQRRPSQGVFMAADYLSEPP    +GP S VES GPHS   +RPPQQSR ADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 SAARPPAPAASNEAPNPAS 75
           A RPPAPAA+N+A NPAS
Sbjct: 61 VAPRPPAPAAANDAQNPAS 79

BLAST of Tan0010608 vs. NCBI nr
Match: KAG6596419.1 (hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 59/77 (76.62%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MSQRQGRHQRRPSQGVFMAADYLSEPPSSVGPTSVVESAGPHS---SRPPQQSRTADPSA 60
          MSQR GRHQRRPSQGVFM ADYLSEPP   GP   VES  P S   SRPP QSR ADP A
Sbjct: 1  MSQRSGRHQRRPSQGVFMTADYLSEPPPPTGPPLPVESVDPQSSFLSRPPPQSRYADPPA 60

Query: 61 ARPPAPAASNEAPNPAS 75
          ARPPAPA SNEAPNPAS
Sbjct: 61 ARPPAPAVSNEAPNPAS 77

BLAST of Tan0010608 vs. NCBI nr
Match: KGN58888.1 (hypothetical protein Csa_002334 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 59/80 (73.75%), Postives = 63/80 (78.75%), Query Frame = 0

Query: 1  MSQRQGRHQRRPSQGVFMAADYLSEPPSSVGPTSVVESAGPHSS----RPPQQSRTADPS 60
          MSQR  RHQRRPSQGVFM ADYLS+PP  VGP S VES GPHSS    RP QQSR+ADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADPV 60

Query: 61 AARPPAP--AASNEAPNPAS 75
          AARPPAP   A+N+APNPAS
Sbjct: 61 AARPPAPPAVANNDAPNPAS 80

BLAST of Tan0010608 vs. ExPASy TrEMBL
Match: A0A5A7TPQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001830 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 1  MSQRQGRHQRRPSQGVFMAADYLSEPPSS--VGPTSVVESAGPHS---SRPPQQSRTADP 60
          MSQR GRHQRRPSQGVFMAADYLSEPP    +GP S VES GPHS   +RPPQQSR ADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 SAARPPAPAASNEAPNPAS 75
           A RPPAPAA+N+A NPAS
Sbjct: 61 VAPRPPAPAAANDAQNPAS 79

BLAST of Tan0010608 vs. ExPASy TrEMBL
Match: A0A0A0LAM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 59/80 (73.75%), Postives = 63/80 (78.75%), Query Frame = 0

Query: 1  MSQRQGRHQRRPSQGVFMAADYLSEPPSSVGPTSVVESAGPHSS----RPPQQSRTADPS 60
          MSQR  RHQRRPSQGVFM ADYLS+PP  VGP S VES GPHSS    RP QQSR+ADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADPV 60

Query: 61 AARPPAP--AASNEAPNPAS 75
          AARPPAP   A+N+APNPAS
Sbjct: 61 AARPPAPPAVANNDAPNPAS 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6580559.13.0e-2077.92hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044076.12.8e-1875.95hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK250... [more]
KAG6596419.18.2e-1876.62hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN58888.13.1e-1773.75hypothetical protein Csa_002334 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7TPQ11.4e-1875.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LAM01.5e-1773.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010608.1Tan0010608.1mRNA