Tan0010604 (gene) Snake gourd v1

Overview
NameTan0010604
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
LocationLG06: 4309356 .. 4309547 (-)
RNA-Seq ExpressionTan0010604
SyntenyTan0010604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAGCAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA

mRNA sequence

ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAGCAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA

Coding sequence (CDS)

ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAGCAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA

Protein sequence

MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
Homology
BLAST of Tan0010604 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-08
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  C  LFAA  ++ V+A++   +P  APGP+S+ASAALP LGSLVGASLVS  + 
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

BLAST of Tan0010604 vs. NCBI nr
Match: KAG7018419.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMK   CA LFAA  V+ VVASD SHSPAAAPGPSS+ASAALP LGSL+GASLVSFVA 
Sbjct: 1  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 FLN 64
           LN
Sbjct: 61 VLN 63

BLAST of Tan0010604 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Tan0010604 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Tan0010604 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  VS  VA+D S SPAAAPGPSS+ASAALP LGSLVGASLV+FVA 
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60

Query: 61 FLN 64
          FLN
Sbjct: 61 FLN 63

BLAST of Tan0010604 vs. NCBI nr
Match: KAG6581996.1 (hypothetical protein SDJN03_21998, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVA 60
          MEMK   CA LFAA  V+ VVASD SHSPAAAPGPSS+ASAALP LGSL+GASLVSFVA
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVA 59

BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-13
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMK   C  LF A  V+ VVASD SHSPAAAPGPSS+ASAALP LGSL+GASLVSFVA 
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 FLN 64
           LN
Sbjct: 61 VLN 63

BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  ++ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA 
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASA LP LGSLVGASLVS VA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08
Identity = 45/64 (70.31%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  CA LFAA  VS  VA+D S SPAAAPGPSS+ASAALP L    GAS+VSFVA 
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 -FLN 64
           FLN
Sbjct: 61 YFLN 60

BLAST of Tan0010604 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-09
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC 60
          MEMKK  C  LFAA  ++ V+A++   +P  APGP+S+ASAALP LGSLVGASLVS  + 
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

BLAST of Tan0010604 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-08
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSS-ASAALPTLGSLVGASLVSFVA 60
          MEMKK  C  +FAA  ++ V+A++V    A APGP++S AS A+P LGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 CFLN 64
           +LN
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S2W45.2e-0857.14Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
KAG7018419.14.0e-1377.78Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7025661.11.5e-1277.78Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023004714.11.5e-1277.78arabinogalactan peptide 23-like [Cucurbita maxima][more]
XP_038899473.12.6e-1277.78arabinogalactan protein 23-like [Benincasa hispida][more]
KAG6581996.12.6e-1279.66hypothetical protein SDJN03_21998, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1KX427.3e-1377.78arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4... [more]
A0A6J1IYE91.6e-1274.60arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4... [more]
A0A6J1H8I11.6e-1276.19arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE... [more]
A0A6J1F3F51.1e-1174.60arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE... [more]
A0A1S3CDX55.4e-0870.31arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G57690.13.7e-0957.14arabinogalactan protein 23 [more]
AT2G41905.19.2e-0856.25BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34672:SF14ARABINOGALACTAN PROTEIN 40coord: 1..63
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010604.1Tan0010604.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane