Tan0010604 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAGCAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAGCAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAGCAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN Homology
BLAST of Tan0010604 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 57.8 bits (138), Expect = 5.2e-08 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0
BLAST of Tan0010604 vs. NCBI nr
Match: KAG7018419.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13 Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Tan0010604 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12 Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Tan0010604 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima]) HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12 Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Tan0010604 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida]) HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12 Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Tan0010604 vs. NCBI nr
Match: KAG6581996.1 (hypothetical protein SDJN03_21998, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12 Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0
BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 7.3e-13 Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 0
BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11 Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 0
BLAST of Tan0010604 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08 Identity = 45/64 (70.31%), Postives = 48/64 (75.00%), Query Frame = 0
BLAST of Tan0010604 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 57.8 bits (138), Expect = 3.7e-09 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0
BLAST of Tan0010604 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 9.2e-08 Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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