Tan0010598 (gene) Snake gourd v1

Overview


Name	Tan0010598
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	GRF-type domain-containing protein
Location	LG10: 16316548 .. 16316979 (+)
RNA-Seq Expression	Tan0010598
Synteny	Tan0010598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGACGAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGTAGGTAATATTATGATTTTATGGTTGATTTTGTTTGAATGTTGTTGCTTGTTTCATTTTTCATCCTCTGTTATGTAGGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAGAAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATAATTGTGTATTTGGGTGTTTGTTAG

mRNA sequence

ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGACGAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAGAAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATAATTGTGTATTTGGGTGTTTGTTAG

Coding sequence (CDS)

ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGACGAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAGAAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATAATTGTGTATTTGGGTGTTTGTTAG

Protein sequence

MNNYDGSLNSIRTHNSSSNNTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRLVEFLYRVVIVVLVGIIVYLGVC

Homology

[Close]

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6514840.1 (hypothetical protein ZIOFF_025214 [Zingiber officinale])

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          C+CGLRA L+TSWT+ NPGRRF+ C  Y     GC FF W DPE++E SK +IN      
Sbjct: 28 CHCGLRATLQTSWTESNPGRRFFSCPKY--RQKGCGFFLWHDPELSERSKTIIN------ 87

Query: 84 CQLKKIHKRLRL 96
           +LK I+K+L+L
Sbjct: 88 -ELKMINKKLKL 90

[Close]

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6527582.1 (hypothetical protein ZIOFF_009697 [Zingiber officinale])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          CYCGLRA L+TSWT+ NP RRF+ C  Y     GC FF W DPEV+E SK +IN+L+   
Sbjct: 28 CYCGLRATLQTSWTESNPRRRFFSCPKY--RQKGCGFFLWHDPEVSERSKTIINELKMNN 87

Query: 84 CQLK 88
           +LK
Sbjct: 88 KKLK 89

[Close]

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6478655.1 (hypothetical protein ZIOFF_062099 [Zingiber officinale])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 24  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLR 81
           CYCGLRA L+TSWT+ NPGRRF+ C  Y     GC FF W DPE +E SK +IN+L+
Sbjct: 46  CYCGLRATLQTSWTESNPGRRFFSCPKY--RQRGCDFFLWHDPESSERSKTIINELK 100

[Close]

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6468846.1 (hypothetical protein ZIOFF_073539 [Zingiber officinale])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 25 YCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEAC 84
          YCGLRA L+TSWT+ NPGRRF+ CS Y     GC FF W DPE++E SK +IN+L+    
Sbjct: 14 YCGLRATLQTSWTESNPGRRFFSCSKY--RQRGCGFFLWHDPELSERSKTIINELKMHNK 73

Query: 85 QLK 88
          +LK
Sbjct: 74 KLK 74

[Close]

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6514370.1 (hypothetical protein ZIOFF_024723 [Zingiber officinale])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGN----NSGCQFFHWFDPEVAEHSKEVINKL 83
          C+CGLRA L+TSWT+ NPGR F+ C  Y  +    N+GC FF W DPE++E SK +IN  
Sbjct: 28 CHCGLRATLQTSWTESNPGRHFFSCPKYRVSFCYINTGCGFFLWHDPELSERSKTIIN-- 87

Query: 84 REEACQLKKIHKRLRL 96
               +LK I+K+L+L
Sbjct: 88 -----ELKIINKKLKL 96

[Close]

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: M5WFX5 (GRF-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021209mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-11
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI----NKL 83
          C+CG + RL TSWT  NPGRRF+GC+ Y G   GC FF W+DP+V E SK VI     +L
Sbjct: 3  CHCGNQCRLTTSWTDNNPGRRFWGCANY-GVRRGCAFFEWYDPQVCERSKIVICGLLKRL 62

Query: 84 REEACQLKKIHKRL 94
          R+E  + +K+ K++
Sbjct: 63 RKEEEENRKLKKKV 75

[Close]

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A5B7ACY3 (GRF-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_023980 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 23 YCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI------ 82
          YC+CG RA +RTSWT  NPGRRF+GC   +G++SGC FF+W+DP +   +++VI      
Sbjct: 5  YCHCGKRAIIRTSWTDLNPGRRFHGCE-KSGDHSGCGFFNWYDPPICNRARQVIPGLLRS 64

Query: 83 -NKLREEACQLKKIHKRLRLVE 98
            +L  E  +L+    RLR  E
Sbjct: 65 MTRLEIEVSRLQNQVSRLRAKE 85

[Close]

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A6V7NYI1 (GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS6808 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          C+CGL+A  RTS T  NPGRRFYGC  Y  N  GC FF W DPE+ E  KE I +L E+ 
Sbjct: 23 CFCGLKAPQRTSLTFDNPGRRFYGCINYKRN--GCGFFRWRDPEICERGKEYIIELLEQI 82

Query: 84 CQLKK 89
           +LKK
Sbjct: 83 GRLKK 85

[Close]

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A6J5W0A5 (GRF-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS2751 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVIN----KL 83
          C+CG + RL TSWT  N GRRF+GCS Y G   GC FF W+DP+V E SK VI+    +L
Sbjct: 20 CHCGNQCRLTTSWTDNNLGRRFWGCSDY-GVRRGCAFFEWYDPQVCERSKIVISGQLKRL 79

Query: 84 REEACQLKKIHKRL 94
          R+E  + +K+ K +
Sbjct: 80 RKEEEENRKLKKEV 92

[Close]

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A6P5ETD2 (uncharacterized protein LOC109709071 OS=Ananas comosus OX=4615 GN=LOC109709071 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 9   NSIRTHNSSSN-NTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSG-CQFFHWFDP 68
           +S  T +S SN +T  C+CGL   ++TSWT+ NPGRRFYGC  Y    S  C +F W+DP
Sbjct: 104 SSFTTSSSRSNQSTPLCHCGLPCTIKTSWTQNNPGRRFYGCPRYRMQESNTCNYFGWYDP 163

Query: 69  EVAEHSKEVI-------NKLREEACQLKKIHKRLRLVEFLYRVV 104
           +    S  ++       NKLREEA    K  +R   +  +Y +V
Sbjct: 164 QFTSRSISMVNGLLESNNKLREEAAVAAKRKRRKLTIFVMYGIV 207

[Close]

BLAST of Tan0010598 vs. TAIR 10
Match: AT2G07505.1 (zinc ion binding )

HSP 1 Score: 45.1 bits (105), Expect = 4.6e-05
Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          C CG    LRTS T +NP R FY C C   N SG   F   D  + E  ++++ K+ E  
Sbjct: 12 CRCGEDVVLRTSKTVKNPRRLFYACRCGEENGSG-HLFRLTDEVMVEEMEDILPKIDELE 71

Query: 84 CQLKKIHKRLRLVEF 99
               + K L+ +EF
Sbjct: 72 GASLTLQKGLQALEF 85

The following BLAST results are available for this feature:

BLAST of Tan0010598 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010598 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6514840.1	4.1e-11	52.78	hypothetical protein ZIOFF_025214 [Zingiber officinale]	[more]
KAG6527582.1	5.3e-11	56.25	hypothetical protein ZIOFF_009697 [Zingiber officinale]	[more]
KAG6478655.1	5.3e-11	59.65	hypothetical protein ZIOFF_062099 [Zingiber officinale]	[more]
KAG6468846.1	5.3e-11	57.14	hypothetical protein ZIOFF_073539 [Zingiber officinale]	[more]
KAG6514370.1	1.2e-10	50.00	hypothetical protein ZIOFF_024723 [Zingiber officinale]	[more]

BLAST of Tan0010598 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5WFX5	4.4e-11	50.00	GRF-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE...	[more]
A0A5B7ACY3	1.7e-10	45.12	GRF-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_023980...	[more]
A0A6V7NYI1	2.8e-10	56.92	GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 G...	[more]
A0A6J5W0A5	3.7e-10	50.00	GRF-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOC...	[more]
A0A6P5ETD2	3.7e-10	40.38	uncharacterized protein LOC109709071 OS=Ananas comosus OX=4615 GN=LOC109709071 P...	[more]

BLAST of Tan0010598 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07505.1	4.6e-05	36.00	zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 23..65 e-value: 6.2E-8 score: 32.6
None	No IPR available	PANTHER	PTHR33248	ZINC ION-BINDING PROTEIN	coord: 16..107
None	No IPR available	PANTHER	PTHR33248:SF13	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2-LIKE	coord: 16..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010598.1	Tan0010598.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding