Tan0010598 (gene) Snake gourd v1

Overview
NameTan0010598
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGRF-type domain-containing protein
LocationLG10: 16316548 .. 16316979 (+)
RNA-Seq ExpressionTan0010598
SyntenyTan0010598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGACGAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGTAGGTAATATTATGATTTTATGGTTGATTTTGTTTGAATGTTGTTGCTTGTTTCATTTTTCATCCTCTGTTATGTAGGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAGAAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATAATTGTGTATTTGGGTGTTTGTTAG

mRNA sequence

ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGACGAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAGAAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATAATTGTGTATTTGGGTGTTTGTTAG

Coding sequence (CDS)

ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGACGAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAGAAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATAATTGTGTATTTGGGTGTTTGTTAG

Protein sequence

MNNYDGSLNSIRTHNSSSNNTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRLVEFLYRVVIVVLVGIIVYLGVC
Homology
BLAST of Tan0010598 vs. NCBI nr
Match: KAG6514840.1 (hypothetical protein ZIOFF_025214 [Zingiber officinale])

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          C+CGLRA L+TSWT+ NPGRRF+ C  Y     GC FF W DPE++E SK +IN      
Sbjct: 28 CHCGLRATLQTSWTESNPGRRFFSCPKY--RQKGCGFFLWHDPELSERSKTIIN------ 87

Query: 84 CQLKKIHKRLRL 96
           +LK I+K+L+L
Sbjct: 88 -ELKMINKKLKL 90

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6527582.1 (hypothetical protein ZIOFF_009697 [Zingiber officinale])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          CYCGLRA L+TSWT+ NP RRF+ C  Y     GC FF W DPEV+E SK +IN+L+   
Sbjct: 28 CYCGLRATLQTSWTESNPRRRFFSCPKY--RQKGCGFFLWHDPEVSERSKTIINELKMNN 87

Query: 84 CQLK 88
           +LK
Sbjct: 88 KKLK 89

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6478655.1 (hypothetical protein ZIOFF_062099 [Zingiber officinale])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 24  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLR 81
           CYCGLRA L+TSWT+ NPGRRF+ C  Y     GC FF W DPE +E SK +IN+L+
Sbjct: 46  CYCGLRATLQTSWTESNPGRRFFSCPKY--RQRGCDFFLWHDPESSERSKTIINELK 100

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6468846.1 (hypothetical protein ZIOFF_073539 [Zingiber officinale])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 25 YCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEAC 84
          YCGLRA L+TSWT+ NPGRRF+ CS Y     GC FF W DPE++E SK +IN+L+    
Sbjct: 14 YCGLRATLQTSWTESNPGRRFFSCSKY--RQRGCGFFLWHDPELSERSKTIINELKMHNK 73

Query: 85 QLK 88
          +LK
Sbjct: 74 KLK 74

BLAST of Tan0010598 vs. NCBI nr
Match: KAG6514370.1 (hypothetical protein ZIOFF_024723 [Zingiber officinale])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGN----NSGCQFFHWFDPEVAEHSKEVINKL 83
          C+CGLRA L+TSWT+ NPGR F+ C  Y  +    N+GC FF W DPE++E SK +IN  
Sbjct: 28 CHCGLRATLQTSWTESNPGRHFFSCPKYRVSFCYINTGCGFFLWHDPELSERSKTIIN-- 87

Query: 84 REEACQLKKIHKRLRL 96
               +LK I+K+L+L
Sbjct: 88 -----ELKIINKKLKL 96

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: M5WFX5 (GRF-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021209mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-11
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI----NKL 83
          C+CG + RL TSWT  NPGRRF+GC+ Y G   GC FF W+DP+V E SK VI     +L
Sbjct: 3  CHCGNQCRLTTSWTDNNPGRRFWGCANY-GVRRGCAFFEWYDPQVCERSKIVICGLLKRL 62

Query: 84 REEACQLKKIHKRL 94
          R+E  + +K+ K++
Sbjct: 63 RKEEEENRKLKKKV 75

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A5B7ACY3 (GRF-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_023980 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 23 YCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI------ 82
          YC+CG RA +RTSWT  NPGRRF+GC   +G++SGC FF+W+DP +   +++VI      
Sbjct: 5  YCHCGKRAIIRTSWTDLNPGRRFHGCE-KSGDHSGCGFFNWYDPPICNRARQVIPGLLRS 64

Query: 83 -NKLREEACQLKKIHKRLRLVE 98
            +L  E  +L+    RLR  E
Sbjct: 65 MTRLEIEVSRLQNQVSRLRAKE 85

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A6V7NYI1 (GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS6808 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          C+CGL+A  RTS T  NPGRRFYGC  Y  N  GC FF W DPE+ E  KE I +L E+ 
Sbjct: 23 CFCGLKAPQRTSLTFDNPGRRFYGCINYKRN--GCGFFRWRDPEICERGKEYIIELLEQI 82

Query: 84 CQLKK 89
           +LKK
Sbjct: 83 GRLKK 85

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A6J5W0A5 (GRF-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS2751 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVIN----KL 83
          C+CG + RL TSWT  N GRRF+GCS Y G   GC FF W+DP+V E SK VI+    +L
Sbjct: 20 CHCGNQCRLTTSWTDNNLGRRFWGCSDY-GVRRGCAFFEWYDPQVCERSKIVISGQLKRL 79

Query: 84 REEACQLKKIHKRL 94
          R+E  + +K+ K +
Sbjct: 80 RKEEEENRKLKKEV 92

BLAST of Tan0010598 vs. ExPASy TrEMBL
Match: A0A6P5ETD2 (uncharacterized protein LOC109709071 OS=Ananas comosus OX=4615 GN=LOC109709071 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 9   NSIRTHNSSSN-NTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSG-CQFFHWFDP 68
           +S  T +S SN +T  C+CGL   ++TSWT+ NPGRRFYGC  Y    S  C +F W+DP
Sbjct: 104 SSFTTSSSRSNQSTPLCHCGLPCTIKTSWTQNNPGRRFYGCPRYRMQESNTCNYFGWYDP 163

Query: 69  EVAEHSKEVI-------NKLREEACQLKKIHKRLRLVEFLYRVV 104
           +    S  ++       NKLREEA    K  +R   +  +Y +V
Sbjct: 164 QFTSRSISMVNGLLESNNKLREEAAVAAKRKRRKLTIFVMYGIV 207

BLAST of Tan0010598 vs. TAIR 10
Match: AT2G07505.1 (zinc ion binding )

HSP 1 Score: 45.1 bits (105), Expect = 4.6e-05
Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 0

Query: 24 CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEA 83
          C CG    LRTS T +NP R FY C C   N SG   F   D  + E  ++++ K+ E  
Sbjct: 12 CRCGEDVVLRTSKTVKNPRRLFYACRCGEENGSG-HLFRLTDEVMVEEMEDILPKIDELE 71

Query: 84 CQLKKIHKRLRLVEF 99
               + K L+ +EF
Sbjct: 72 GASLTLQKGLQALEF 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6514840.14.1e-1152.78hypothetical protein ZIOFF_025214 [Zingiber officinale][more]
KAG6527582.15.3e-1156.25hypothetical protein ZIOFF_009697 [Zingiber officinale][more]
KAG6478655.15.3e-1159.65hypothetical protein ZIOFF_062099 [Zingiber officinale][more]
KAG6468846.15.3e-1157.14hypothetical protein ZIOFF_073539 [Zingiber officinale][more]
KAG6514370.11.2e-1050.00hypothetical protein ZIOFF_024723 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
M5WFX54.4e-1150.00GRF-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE... [more]
A0A5B7ACY31.7e-1045.12GRF-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_023980... [more]
A0A6V7NYI12.8e-1056.92GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 G... [more]
A0A6J5W0A53.7e-1050.00GRF-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOC... [more]
A0A6P5ETD23.7e-1040.38uncharacterized protein LOC109709071 OS=Ananas comosus OX=4615 GN=LOC109709071 P... [more]
Match NameE-valueIdentityDescription
AT2G07505.14.6e-0536.00zinc ion binding [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010666Zinc finger, GRF-typePFAMPF06839zf-GRFcoord: 23..65
e-value: 6.2E-8
score: 32.6
NoneNo IPR availablePANTHERPTHR33248ZINC ION-BINDING PROTEINcoord: 16..107
NoneNo IPR availablePANTHERPTHR33248:SF13DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2-LIKEcoord: 16..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010598.1Tan0010598.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding