Tan0010539 (gene) Snake gourd v1

Overview


Name	Tan0010539
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 72589656 .. 72590734 (-)
RNA-Seq Expression	Tan0010539
Synteny	Tan0010539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCGGCGCTGATGATACCAGCCGCCATGGCGATCCTAATTCTTCTGCTCAATCCAACCGGTTGCGATGCTGCATCTTTCAAACCACTCCTCAACAACGACACTTCGAGTAAGTTTGAAACAACTTTTTAAATATTTACCCTAAATGGTTTCTTCCAAAAATTAGATTCAAAGTTAATATGTTAACTACTACTAATTACTCTATCTTTGAATTTCATTTTGATACTTGTATTTGAGAACATTTTTATTGTGGTTTTTGTACGAAGTTTTTGCCTATTTTAATCTTCGTATTTCCATTGGTTTTAGTCCATGTTCTCATAGGTATGAATAGAACTTGTTTGATGGTGATTTTAAAATAACAAAAATTATTTTTATTACATTCAAAATTGCTTTTATTACCTTTAAAATGACTTTTAAAACATGTTTTTAATAACTCTTTTAAAACGTGGTTCCCAAGTACATTTCAAAGTGATTTTAAATATGATAAAAGTGATTTTAATAATTTTAAAATTATTCTCAAGCATATATATCTTAGATCTTGAAATTACTTTGAAAAGTATTTAATATCTTCGTAAATTTTTGTCTAATAAATTAAACATATGAAATTAAATTTTTTGTCTTAGATAAAATTAAAAAATTATAAATTTATCCTTATGATATTTGATCTTTATAAGGTCTTAGATACTTTGAAATTGAGGTAGCTATTAGATACAAAATTGAAAGCTGAAAAAACGAGTAAATACTTTCTAAAGCTGAAAAATCAAATAGACAACAAACTCAAAAGATTAGGTGATAAACTTGGAACTTTTCTTCGTGTTCGATCGACGGACACAGGCGTCGGGAAATATCTGATCGGAGAGCAAGATGTGGATTCAGAGTTTCTGATGGAGTCGCACATCAGCCGAATCCTAGCGAGCTCCCAAGACTACGAAACCAGCAACACTAACGACGCCAACAAAGCTTCCAGCGCCGATTGCGGCCGGCCGCCGCGTTACGACAGTTGCCTCGGCGACAAAGGAAATAACCCGCCGCCGGAAAACTGTGGCACCTATAATCGTGAAAATCCCTGTTAG

mRNA sequence

ATGGCTGCAGCGGCGCTGATGATACCAGCCGCCATGGCGATCCTAATTCTTCTGCTCAATCCAACCGGTTGCGATGCTGCATCTTTCAAACCACTCCTCAACAACGACACTTCGAGCGTCGGGAAATATCTGATCGGAGAGCAAGATGTGGATTCAGAGTTTCTGATGGAGTCGCACATCAGCCGAATCCTAGCGAGCTCCCAAGACTACGAAACCAGCAACACTAACGACGCCAACAAAGCTTCCAGCGCCGATTGCGGCCGGCCGCCGCGTTACGACAGTTGCCTCGGCGACAAAGGAAATAACCCGCCGCCGGAAAACTGTGGCACCTATAATCGTGAAAATCCCTGTTAG

Coding sequence (CDS)

ATGGCTGCAGCGGCGCTGATGATACCAGCCGCCATGGCGATCCTAATTCTTCTGCTCAATCCAACCGGTTGCGATGCTGCATCTTTCAAACCACTCCTCAACAACGACACTTCGAGCGTCGGGAAATATCTGATCGGAGAGCAAGATGTGGATTCAGAGTTTCTGATGGAGTCGCACATCAGCCGAATCCTAGCGAGCTCCCAAGACTACGAAACCAGCAACACTAACGACGCCAACAAAGCTTCCAGCGCCGATTGCGGCCGGCCGCCGCGTTACGACAGTTGCCTCGGCGACAAAGGAAATAACCCGCCGCCGGAAAACTGTGGCACCTATAATCGTGAAAATCCCTGTTAG

Protein sequence

MAAAALMIPAAMAILILLLNPTGCDAASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESHISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC

Homology

[Close]

BLAST of Tan0010539 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 94/118 (79.66%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLNPTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESH 60
           MA AA MIPAAMAI+ILLLNP   DA  SFKP LNNDTS+ GKYLIG+QD+DSEFLMESH
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKP-LNNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           ISRILA SQ+++TSNTNDANKAS   CGRPPRYDSCLG K NNPPPENCGT+NR NPC
Sbjct: 61  ISRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Tan0010539 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 94/118 (79.66%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLNPTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESH 60
           MAAAA+MIPAAMAI+ILLLNPT  DA  +FKP LNNDTS+ GKYLIG+QD+DSEFLMESH
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKP-LNNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           ISRILA SQD++TS TNDANKAS   C RPPRYDSCLG K NNPPPENCGT+NR NPC
Sbjct: 61  ISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Tan0010539 vs. NCBI nr
Match: KAG6607029.1 (hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036725.1 hypothetical protein SDJN02_00345, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLNPTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESH 60
           MAAAA++IPAAMAI+ILLLNPT  DA  SFKP LNNDTS+ GKYLIG+QD+DSEFLMESH
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKP-LNNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           ISRILA SQ+++TS TNDANKAS   CGRPPRYDSCLG K NNPPPENCGT+NR NPC
Sbjct: 61  ISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Tan0010539 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLNPTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESH 60
           MAAAA++IPAAMAI+ILLLNPT  DA  SFKP LNNDTS+ GKYLIG+QD+DSEFLMESH
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKP-LNNDTSAAGKYLIGDQDLDSEFLMESH 60

Query: 61  ISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           ISRILA SQ+++TS TNDANKAS   CGRPPRYDSCLG K NNPPPENCGT+NR NPC
Sbjct: 61  ISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Tan0010539 vs. NCBI nr
Match: TYK01622.1 (hypothetical protein E5676_scaffold451G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 78/119 (65.55%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLN-PTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMES 60
           M A+A MIPAA+  +ILLLN P+ C+A  +F+PLL+N TS   + ++GE+D+D EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           HISRILASSQ+++T++T DANKAS   CGRPPRYDSCLG K NNPPP NCGTYNR NPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

[Close]

BLAST of Tan0010539 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.7e-43
Identity = 94/118 (79.66%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLNPTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESH 60
           MAAAA+MIPAAMAI+ILLLNPT  DA  +FKP LNNDTS+ GKYLIG+QD+DSEFLMESH
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKP-LNNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           ISRILA SQD++TS TNDANKAS   C RPPRYDSCLG K NNPPPENCGT+NR NPC
Sbjct: 61  ISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Tan0010539 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.7e-43
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLNPTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMESH 60
           MAAAA++IPAAMAI+ILLLNPT  DA  SFKP LNNDTS+ GKYLIG+QD+DSEFLMESH
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKP-LNNDTSAAGKYLIGDQDLDSEFLMESH 60

Query: 61  ISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           ISRILA SQ+++TS TNDANKAS   CGRPPRYDSCLG K NNPPPENCGT+NR NPC
Sbjct: 61  ISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Tan0010539 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.2e-34
Identity = 78/119 (65.55%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLN-PTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMES 60
           M A+A MIPAA+  +ILLLN P+ C+A  +F+PLL+N TS   + ++GE+D+D EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           HISRILASSQ+++T++T DANKAS   CGRPPRYDSCLG K NNPPP NCGTYNR NPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

[Close]

BLAST of Tan0010539 vs. ExPASy TrEMBL
Match: A0A0A0LCJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.5e-32
Identity = 76/119 (63.87%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MAAAALMIPAAMAILILLLN-PTGCDA-ASFKPLLNNDTSSVGKYLIGEQDVDSEFLMES 60
           M A+ALMIPAA+  +ILLL+ P+ CDA  +F+PLL+N +S  GK ++GE+D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           HISRILASS++Y+T++T +ANKAS   C RPPRYDSCLG K NNPPP NC  YNR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Tan0010539 vs. ExPASy TrEMBL
Match: A0A0A0L711 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 70/117 (59.83%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 3   AAALMIPAAMAILILLLNPTGCDAA--SFKPLLNNDTSSVGKYLIGEQDVDSEFLMESHI 62
           A ALMIPAAMA+++++L PT C  A  SFKPL N+ +  + KY++ E+D+ S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILASSQDYETSNTNDANKASSADCGRPPRYDSCLGDKGNNPPPENCGTYNRENPC 118
           SR+LA SQD+ETS+TN+A + S+ +C RPPRYDSCLG K N PPP+NC T+NRE+PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

The following BLAST results are available for this feature:

BLAST of Tan0010539 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523220.1	1.2e-42	79.66	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
XP_022998105.1	1.2e-42	79.66	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
KAG6607029.1	1.2e-42	79.66	hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948338.1	2.0e-42	79.66	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
TYK01622.1	1.7e-33	65.55	hypothetical protein E5676_scaffold451G002320 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0010539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBP5	5.7e-43	79.66	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A6J1G927	9.7e-43	79.66	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A5D3BS53	8.2e-34	65.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCJ4	4.5e-32	63.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711	2.9e-31	59.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]

BLAST of Tan0010539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010539.1	Tan0010539.1	mRNA