Tan0010531 (gene) Snake gourd v1

Overview


Name	Tan0010531
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Low-density receptor-like protein
Location	LG06: 78651480 .. 78652454 (-)
RNA-Seq Expression	Tan0010531
Synteny	Tan0010531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGAGTTTCTCTTCTTCTTGCCTGATCGAACCATTTCAACTGCATCGCGGGAATCTCTGAGCTCTGATAGATCACAGTCTCTCTCTCTCTCTCTCTCTTTGTTTCTCTCTGCAAGACAAAGCCACCGGAAACAATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGGCCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGACATTCGCGAGAACAAACAGACCGTCAAAGAAGGTGCGTTAATTTGTTGTTAAATTTGTATGTTTATGCTCGTCTGAGCTTTGAATGGAGTTTGAATTCTTTGTTCTGGACCTGCATTTCAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAACTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTCAGTTATTTGAATTGTGATTACTCCTGGAGAATTGAATGGTTTCATATGCATTAGTAAAGTTTAATCAGCGGATCTGGATTTTTCTTTTATCGTAATAATGTGTTCTAATGACTGAATTAGCAACGATTGAATTAATTTAGTTAAAAGAAGGTAATGAAAGGTAAAAAAATCGTAATGCTTCAGCGTTCAGCCTTCAGTGTTGCCATTATGCATTGTTAGTCACTCGGATATTGTGTATATTGATATTTGTACCTGAGATGTGGTGAACTACTACTTCCGAAGGACTTATTCTTGCAAAAAAAAAAAAAAAAAGATATTGCTAGTTTTTAATCTTCGCCTTCCCTCTGAACAGATTCAGATATGTATCTTAAATGAGCGAATTTGGCTGATATTGTGAACGAGAATTTATAGTTTAAGACTGAATATATGGTATAGGTGGGAATGCGTACATAAGATG

mRNA sequence

GCTGAGTTTCTCTTCTTCTTGCCTGATCGAACCATTTCAACTGCATCGCGGGAATCTCTGAGCTCTGATAGATCACAGTCTCTCTCTCTCTCTCTCTCTTTGTTTCTCTCTGCAAGACAAAGCCACCGGAAACAATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGGCCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGACATTCGCGAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAACTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTCAGTTATTTGAATTGTGATTACTCCTGGAGAATTGAATGGTTTCATATGCATTAGTAAAGTTTAATCAGCGGATCTGGATTTTTCTTTTATCGTAATAATGTGTTCTAATGACTGAATTAGCAACGATTGAATTAATTTAGTTAAAAGAAGGTAATGAAAGGTAAAAAAATCGTAATGCTTCAGCGTTCAGCCTTCAGTGTTGCCATTATGCATTGTTAGTCACTCGGATATTGTGTATATTGATATTTGTACCTGAGATGTGGTGAACTACTACTTCCGAAGGACTTATTCTTGCAAAAAAAAAAAAAAAAAGATATTGCTAGTTTTTAATCTTCGCCTTCCCTCTGAACAGATTCAGATATGTATCTTAAATGAGCGAATTTGGCTGATATTGTGAACGAGAATTTATAGTTTAAGACTGAATATATGGTATAGGTGGGAATGCGTACATAAGATG

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGGCCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGACATTCGCGAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAACTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTTGTGA

Protein sequence

MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQVL

Homology

[Close]

BLAST of Tan0010531 vs. NCBI nr
Match: KAG6593936.1 (hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 6.8e-41
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 94

[Close]

BLAST of Tan0010531 vs. NCBI nr
Match: XP_022930338.1 (uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata])

HSP 1 Score: 176.8 bits (447), Expect = 8.9e-41
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]

BLAST of Tan0010531 vs. NCBI nr
Match: XP_038875265.1 (uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASSTARITFRV+MVV LLLV FYVGRPLYWKISATVHDIR+NKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQVL 96
          SVGWYHDESDSGVHDG DGKKAGSVA RRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQVL 95

[Close]

BLAST of Tan0010531 vs. NCBI nr
Match: XP_022930336.1 (uncharacterized protein LOC111436812 isoform X1 [Cucurbita moschata])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]

BLAST of Tan0010531 vs. NCBI nr
Match: XP_022930340.1 (uncharacterized protein LOC111436812 isoform X5 [Cucurbita moschata])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]

BLAST of Tan0010531 vs. ExPASy TrEMBL
Match: A0A6J1EUV5 (uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.3e-41
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]

BLAST of Tan0010531 vs. ExPASy TrEMBL
Match: A0A6J1EWN5 (uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.4e-41
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]

BLAST of Tan0010531 vs. ExPASy TrEMBL
Match: A0A6J1EQN0 (uncharacterized protein LOC111436812 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.4e-41
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]

BLAST of Tan0010531 vs. ExPASy TrEMBL
Match: A0A6J1ER65 (uncharacterized protein LOC111436812 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.6e-41
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Tan0010531 vs. ExPASy TrEMBL
Match: A0A6J1EQ68 (uncharacterized protein LOC111436812 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.6e-41
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Tan0010531 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-29
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  ASSTARITFRVVMVVALLLVLFYVGRPLYWKISATVHDIRENKQTVKEGLSQIVLEAQKS 61
          +S T RI FR V+++AL++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGTDGKKAGSVAARRLL 92
          VGWYHDESDSG  +G   KK+G   +RRLL
Sbjct: 66 VGWYHDESDSGFREG-HNKKSGIAVSRRLL 94

The following BLAST results are available for this feature:

BLAST of Tan0010531 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010531 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593936.1	6.8e-41	94.68	hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930338.1	8.9e-41	93.62	uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata]	[more]
XP_038875265.1	1.2e-40	93.68	uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida]	[more]
XP_022930336.1	1.5e-40	93.62	uncharacterized protein LOC111436812 isoform X1 [Cucurbita moschata]	[more]
XP_022930340.1	1.5e-40	93.62	uncharacterized protein LOC111436812 isoform X5 [Cucurbita moschata]	[more]

BLAST of Tan0010531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUV5	4.3e-41	93.62	uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EWN5	7.4e-41	93.62	uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EQN0	7.4e-41	93.62	uncharacterized protein LOC111436812 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ER65	9.6e-41	94.62	uncharacterized protein LOC111436812 isoform X4 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EQ68	9.6e-41	94.62	uncharacterized protein LOC111436812 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Tan0010531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18850.1	1.3e-29	68.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010531.1	Tan0010531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane