Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGAATTTACCCGTCTGTCCCGCTTTGCCCCGAGCCGGTGGATACGAAGCAAAGAAGACCGAGCGCTTCATCATGGGGCTAGATGAGAATGTTCGAGGCTTTATTCAAGCTTTAGCACCTCGATTACGCCTCCGCAGTGAGAGTGGCGGGCCGATTTGGGTGCAGAGCTCGCATCGCACAACAGTGTGTAGTTAGCTCTGGGCAACCCATAGCGAATCATAAGAGGAAGTGGGACCAGCCCATTCCACTCACAAATTTCTCAACAGACACCGCATAGACTGGGCATTTCCGTGACGTGTCCCAAACCCAGAAATCACCATCAATAACAGATCGGGGAATAGCGGCGGAGAGATAGGCCACAGCAGCAAGGAATGTGGTAAATCGCGACTGGGTAAATGTATGGCCTTGGTCCGAGCGTGTTTCAAGTGTGGAAAGGAAGGGCACAGAGCTAATATCTCCGCTCGAATCAAGCCAAAGACTAGCCACCCACAGATTATGAGTAGTGGGCCTGCTGTGAAGCCGGCCATACAACAGGGGAGAGCCTATGCGAGCACCAGTCGAGACATCTATGGCTCAGACTCAGTGGTTACAGGTACACTTCCATTACTTGGACACCTCGCCTTTGTACTATTTGATTCTCGGTTCTACGACTCTTTTATCTCTCGCATCCTTTGTAAGTCAAGTGAGTTAGGACTAGAAACGCCATGTGATGCCCTATCTCGCTCTCCTCTCGCGGAATAAATTTGTTGGCCAATATGAAAGTCAAGGATGGTAGTGTGACCATCATGCACCATGTGTTAGCAAAGAACCTAGTGGTCTTAGATATGTTTGATTTTGATGTAATTTTAGGCATGGACTGGTTAGCGCAGAACCATGCTTGTATTGATTGTTTCAGGAAGGAGGTAGTGTTCACTCCTCCTAACCAACCTGGCTACAGTTCAGAGGCACAATGA
mRNA sequence
ATGAGAGGGAATTTACCCGTCTGTCCCGCTTTGCCCCGAGCCGGTGGATACGAAGCAAAGAAGACCGAGCGCTTCATCATGGGGCTAGATGAGAATGTTCGAGGCTTTATTCAAGCTTTAGCACCTCGATTACGCCTCCGCAAAATCACCATCAATAACAGATCGGGGAATAGCGGCGGAGAGATAGGCCACAGCAGCAAGGAATGTGGTAAATCGCGACTGGGTAAATGTATGGCCTTGGTCCGAGCGTGTTTCAAGTGTGGAAAGGAAGGGCACAGAGCTAATATCTCCGCTCGAATCAAGCCAAAGACTAGCCACCCACAGATTATGAGTAGTGGGCCTGCTGTGAAGCCGGCCATACAACAGGGGAGAGCCTATGCGAGCACCAGTCGAGACATCTATGGCTCAGACTCAGTGGTTACAGGTACACTTCCATTACTTGGACACCTCGCCTTTGTACTATTTGATTCTCGGTTCTACGACTCTTTTATCTCTCGCATCCTTTGCATGGACTGGTTAGCGCAGAACCATGCTTGTATTGATTGTTTCAGGAAGGAGGTAGTGTTCACTCCTCCTAACCAACCTGGCTACAGTTCAGAGGCACAATGA
Coding sequence (CDS)
ATGAGAGGGAATTTACCCGTCTGTCCCGCTTTGCCCCGAGCCGGTGGATACGAAGCAAAGAAGACCGAGCGCTTCATCATGGGGCTAGATGAGAATGTTCGAGGCTTTATTCAAGCTTTAGCACCTCGATTACGCCTCCGCAAAATCACCATCAATAACAGATCGGGGAATAGCGGCGGAGAGATAGGCCACAGCAGCAAGGAATGTGGTAAATCGCGACTGGGTAAATGTATGGCCTTGGTCCGAGCGTGTTTCAAGTGTGGAAAGGAAGGGCACAGAGCTAATATCTCCGCTCGAATCAAGCCAAAGACTAGCCACCCACAGATTATGAGTAGTGGGCCTGCTGTGAAGCCGGCCATACAACAGGGGAGAGCCTATGCGAGCACCAGTCGAGACATCTATGGCTCAGACTCAGTGGTTACAGGTACACTTCCATTACTTGGACACCTCGCCTTTGTACTATTTGATTCTCGGTTCTACGACTCTTTTATCTCTCGCATCCTTTGCATGGACTGGTTAGCGCAGAACCATGCTTGTATTGATTGTTTCAGGAAGGAGGTAGTGTTCACTCCTCCTAACCAACCTGGCTACAGTTCAGAGGCACAATGA
Protein sequence
MRGNLPVCPALPRAGGYEAKKTERFIMGLDENVRGFIQALAPRLRLRKITINNRSGNSGGEIGHSSKECGKSRLGKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPAVKPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISRILCMDWLAQNHACIDCFRKEVVFTPPNQPGYSSEAQ
Homology
BLAST of Tan0010489 vs. NCBI nr
Match:
KAA0037289.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05895.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 118.2 bits (295), Expect = 8.0e-23
Identity = 78/222 (35.14%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPRLRLRKITI---------------NNRSGNSGGEI 77
+A +TE+F+ GL N++G ++AL P + I +R GG
Sbjct: 153 DAARTEKFVRGLRLNLQGIVRALRPATHADALRIALDLSLHERADPSKATSRGSALGGVF 212
Query: 78 GHSSKE----------------CGKSRLGKCMALVRACFKCGKEGHRANISARIKPKTSH 137
+E CG+ G+C+A CF+C + GH A+ R KP
Sbjct: 213 QRHRRELVVAGRTLRELPVYFTCGRVHGGRCLAGSGVCFRCRQPGHTADACPR-KPFEMT 272
Query: 138 PQIMSSGPAVKPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISR 197
P S A QQGR +A+T ++ + VVTGTLP+LGH AFVLFDS SFIS
Sbjct: 273 PHQPS-------ASQQGRVFATTRQEAERAGRVVTGTLPILGHYAFVLFDSGSSHSFISS 332
BLAST of Tan0010489 vs. NCBI nr
Match:
KAA0061201.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 117.5 bits (293), Expect = 1.4e-22
Identity = 80/227 (35.24%), Postives = 113/227 (49.78%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPR-----------LRLRKITINNRSGNSG-----GE 77
EA +TE+F+ GL +++G ++AL P L L + ++++ G
Sbjct: 228 EAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGHRRELAA 287
Query: 78 IGHSSKE------CGKSRLGKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPA 137
G + +E CG+ G+C+A CF+C + GH A++ R +T+ PQ +S
Sbjct: 288 AGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSAS--- 347
Query: 138 VKPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISR--------- 194
QQGR YA+T ++ + +VVTGTLP+LGH AFVLFDS SFIS
Sbjct: 348 -----QQGRVYATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLE 407
BLAST of Tan0010489 vs. NCBI nr
Match:
KAA0054634.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 84/256 (32.81%), Postives = 115/256 (44.92%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAP-------RLRL-----------------------R 77
EA +TE+F+ GL +++G ++AL P R+ L R
Sbjct: 227 EAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGSALGQKR 286
Query: 78 KI-----TINNRSGNSGGEIGHSSKE----------------CGKSRLGKCMALVRACFK 137
K+ + R+ SGG +E CG+ G+C+A CF+
Sbjct: 287 KVETQPDVVPQRTLRSGGVFQRHRRELAAAGRTLREVPACTTCGRVHGGRCLAGSGVCFR 346
Query: 138 CGKEGHRANISARIKPKTSHPQIMSSGPAVKPAIQQGRAYASTSRDIYGSDSVVTGTLPL 194
C + GH A++ R +T+ PQ +S QQGR +A+T ++ S +VVTGTLP+
Sbjct: 347 CRQPGHTADVCPRKPFETTPPQPSAS--------QQGRVFATTRQEAERSGTVVTGTLPI 406
BLAST of Tan0010489 vs. NCBI nr
Match:
TYK26964.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 110.2 bits (274), Expect = 2.2e-20
Identity = 74/229 (32.31%), Postives = 110/229 (48.03%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPR-----------LRLRKITINNRSGNSGGEIGHSS 77
EA + E+F+ GL +++G ++AL P L L + ++++ G +G +
Sbjct: 92 EAARIEKFVRGLKLDLQGIVRALRPATHADALHIALDLSLHERADSSKAAGRGSALGQNR 151
Query: 78 KECGKSRL----------GKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPAV 137
K + + G+C+A CF+C + H A+ + KP + P S
Sbjct: 152 KVESQPDVIPKRTLRVHGGRCLAGSGVCFRCRQPEHTADACPQ-KPFETTPHQPS----- 211
Query: 138 KPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISRILC------- 197
A QQGR +A+T ++ + ++VTGTLP+L H AFVLFDS SFIS +
Sbjct: 212 --ASQQGRVFATTRQEAERAGTMVTGTLPILWHYAFVLFDSVSSHSFISSVFVQHVGLEV 271
Query: 198 ----------------MDWLAQNHACIDCFRKEVVFTPPNQPGYSSEAQ 203
MDWL+ NHACIDCF KEVVF PP+ P + Q
Sbjct: 272 EPLGSVLSDFYSIWGGMDWLSANHACIDCFGKEVVFNPPSGPSFKFRGQ 312
BLAST of Tan0010489 vs. NCBI nr
Match:
KAA0039148.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 110.2 bits (274), Expect = 2.2e-20
Identity = 74/229 (32.31%), Postives = 110/229 (48.03%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPR-----------LRLRKITINNRSGNSGGEIGHSS 77
EA + E+F+ GL +++G ++AL P L L + ++++ G +G +
Sbjct: 92 EAARIEKFVRGLKLDLQGIVRALRPATHADALHIALDLSLHERADSSKAAGRGSALGQNR 151
Query: 78 KECGKSRL----------GKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPAV 137
K + + G+C+A CF+C + H A+ + KP + P S
Sbjct: 152 KVESQPDVIPKRTLRVHGGRCLAGSGVCFRCRQPEHTADACPQ-KPFETTPHQPS----- 211
Query: 138 KPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISRILC------- 197
A QQGR +A+T ++ + ++VTGTLP+L H AFVLFDS SFIS +
Sbjct: 212 --ASQQGRVFATTRQEAERAGTMVTGTLPILWHYAFVLFDSVSSHSFISSVFVQHVGLEV 271
Query: 198 ----------------MDWLAQNHACIDCFRKEVVFTPPNQPGYSSEAQ 203
MDWL+ NHACIDCF KEVVF PP+ P + Q
Sbjct: 272 EPLGSVLSDFYSIWGGMDWLSANHACIDCFGKEVVFNPPSGPSFKFRGQ 312
BLAST of Tan0010489 vs. ExPASy TrEMBL
Match:
A0A5D3C3E0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1085G00040 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 3.9e-23
Identity = 78/222 (35.14%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPRLRLRKITI---------------NNRSGNSGGEI 77
+A +TE+F+ GL N++G ++AL P + I +R GG
Sbjct: 153 DAARTEKFVRGLRLNLQGIVRALRPATHADALRIALDLSLHERADPSKATSRGSALGGVF 212
Query: 78 GHSSKE----------------CGKSRLGKCMALVRACFKCGKEGHRANISARIKPKTSH 137
+E CG+ G+C+A CF+C + GH A+ R KP
Sbjct: 213 QRHRRELVVAGRTLRELPVYFTCGRVHGGRCLAGSGVCFRCRQPGHTADACPR-KPFEMT 272
Query: 138 PQIMSSGPAVKPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISR 197
P S A QQGR +A+T ++ + VVTGTLP+LGH AFVLFDS SFIS
Sbjct: 273 PHQPS-------ASQQGRVFATTRQEAERAGRVVTGTLPILGHYAFVLFDSGSSHSFISS 332
BLAST of Tan0010489 vs. ExPASy TrEMBL
Match:
A0A5A7V5X5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00260 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 6.6e-23
Identity = 80/227 (35.24%), Postives = 113/227 (49.78%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPR-----------LRLRKITINNRSGNSG-----GE 77
EA +TE+F+ GL +++G ++AL P L L + ++++ G
Sbjct: 228 EAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGHRRELAA 287
Query: 78 IGHSSKE------CGKSRLGKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPA 137
G + +E CG+ G+C+A CF+C + GH A++ R +T+ PQ +S
Sbjct: 288 AGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSAS--- 347
Query: 138 VKPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISR--------- 194
QQGR YA+T ++ + +VVTGTLP+LGH AFVLFDS SFIS
Sbjct: 348 -----QQGRVYATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLE 407
BLAST of Tan0010489 vs. ExPASy TrEMBL
Match:
A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 6.2e-21
Identity = 84/256 (32.81%), Postives = 115/256 (44.92%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAP-------RLRL-----------------------R 77
EA +TE+F+ GL +++G ++AL P R+ L R
Sbjct: 227 EAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGSALGQKR 286
Query: 78 KI-----TINNRSGNSGGEIGHSSKE----------------CGKSRLGKCMALVRACFK 137
K+ + R+ SGG +E CG+ G+C+A CF+
Sbjct: 287 KVETQPDVVPQRTLRSGGVFQRHRRELAAAGRTLREVPACTTCGRVHGGRCLAGSGVCFR 346
Query: 138 CGKEGHRANISARIKPKTSHPQIMSSGPAVKPAIQQGRAYASTSRDIYGSDSVVTGTLPL 194
C + GH A++ R +T+ PQ +S QQGR +A+T ++ S +VVTGTLP+
Sbjct: 347 CRQPGHTADVCPRKPFETTPPQPSAS--------QQGRVFATTRQEAERSGTVVTGTLPI 406
BLAST of Tan0010489 vs. ExPASy TrEMBL
Match:
A0A5A7T8E0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00460 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 74/229 (32.31%), Postives = 110/229 (48.03%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPR-----------LRLRKITINNRSGNSGGEIGHSS 77
EA + E+F+ GL +++G ++AL P L L + ++++ G +G +
Sbjct: 92 EAARIEKFVRGLKLDLQGIVRALRPATHADALHIALDLSLHERADSSKAAGRGSALGQNR 151
Query: 78 KECGKSRL----------GKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPAV 137
K + + G+C+A CF+C + H A+ + KP + P S
Sbjct: 152 KVESQPDVIPKRTLRVHGGRCLAGSGVCFRCRQPEHTADACPQ-KPFETTPHQPS----- 211
Query: 138 KPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISRILC------- 197
A QQGR +A+T ++ + ++VTGTLP+L H AFVLFDS SFIS +
Sbjct: 212 --ASQQGRVFATTRQEAERAGTMVTGTLPILWHYAFVLFDSVSSHSFISSVFVQHVGLEV 271
Query: 198 ----------------MDWLAQNHACIDCFRKEVVFTPPNQPGYSSEAQ 203
MDWL+ NHACIDCF KEVVF PP+ P + Q
Sbjct: 272 EPLGSVLSDFYSIWGGMDWLSANHACIDCFGKEVVFNPPSGPSFKFRGQ 312
BLAST of Tan0010489 vs. ExPASy TrEMBL
Match:
A0A5D3DTY0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00260 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 74/229 (32.31%), Postives = 110/229 (48.03%), Query Frame = 0
Query: 18 EAKKTERFIMGLDENVRGFIQALAPR-----------LRLRKITINNRSGNSGGEIGHSS 77
EA + E+F+ GL +++G ++AL P L L + ++++ G +G +
Sbjct: 92 EAARIEKFVRGLKLDLQGIVRALRPATHADALHIALDLSLHERADSSKAAGRGSALGQNR 151
Query: 78 KECGKSRL----------GKCMALVRACFKCGKEGHRANISARIKPKTSHPQIMSSGPAV 137
K + + G+C+A CF+C + H A+ + KP + P S
Sbjct: 152 KVESQPDVIPKRTLRVHGGRCLAGSGVCFRCRQPEHTADACPQ-KPFETTPHQPS----- 211
Query: 138 KPAIQQGRAYASTSRDIYGSDSVVTGTLPLLGHLAFVLFDSRFYDSFISRILC------- 197
A QQGR +A+T ++ + ++VTGTLP+L H AFVLFDS SFIS +
Sbjct: 212 --ASQQGRVFATTRQEAERAGTMVTGTLPILWHYAFVLFDSVSSHSFISSVFVQHVGLEV 271
Query: 198 ----------------MDWLAQNHACIDCFRKEVVFTPPNQPGYSSEAQ 203
MDWL+ NHACIDCF KEVVF PP+ P + Q
Sbjct: 272 EPLGSVLSDFYSIWGGMDWLSANHACIDCFGKEVVFNPPSGPSFKFRGQ 312
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C3E0 | 3.9e-23 | 35.14 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7V5X5 | 6.6e-23 | 35.24 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00260 PE... | [more] |
A0A5A7UHL7 | 6.2e-21 | 32.81 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24... | [more] |
A0A5A7T8E0 | 1.1e-20 | 32.31 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00460 PE... | [more] |
A0A5D3DTY0 | 1.1e-20 | 32.31 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00260 PE... | [more] |
Match Name | E-value | Identity | Description | |