Tan0010477 (gene) Snake gourd v1

Overview
NameTan0010477
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
LocationLG04: 5703823 .. 5706614 (-)
RNA-Seq ExpressionTan0010477
SyntenyTan0010477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGCGTATTACTTTCCCTGGAGCCGCTAGGGCCCGTCTTGCCTCCACAAAAAGGGGAATTTACCTTCCAAAATCTATGCACTCAAATTTTCACAATTAAGCGAAACGACGATACATTCTTCCGATCAGCGGCGCCGCCGGCTCCTCCGCCGGAATCCGGTCATCTTGTGACATGGCTGAGAACAGAGAGATTATTCATAGAAACCCTAAATATGCGAAGTCGTTGCTGAAAAATCTGCAGAAATTAGGGGAGAAGAAAGAAGAAACTCCGCCAGTGCCACCTGATCAGAAACCTAAAGTCGTCACTGTTCCGGTAACGGAAGTGGTTGCTCCGCCGCCGTTGGCGGCTGAGTGCAAGCGGCCTGGCAAGTTCTCGCATCCGGCTATCCGGTGGTCGGTATGATTCGTTCTCCATTTTTATATTTTGTATTTTAGCATTTATAATTATTAAATTTCCATCGACATGTCGGATTCAACACTAGTAAATCGACATTTCCAGTACAAAATTGATGAAATATTAAAGAAAATAACAAGATGTAACATAAAAGGTTTATTATCTAATTTTATTTTTTTAAAAAAAAATTGTTTTTAAATTTTTCTATAAATATGTATCGATATCGACATTTTATTGATATTTCTATCGACATTTTATTGATATTTCTATCCACATTTCTATGAAATTGACACTTCAATATTTATATCGACATCGATATTTTAAACCTTATTTATAATTATTCTTTACATGATTTATATTGAAATACTTCCTCCCTATGTGAAAAATACATAAATACAGTCGATTACACTCATTTACTCTGCAATCTACTATTCAACTGCATGAAAAGAAAATTTTGATTTTTTTTTAAACAGATAAATTTTGTAGTTGAAAATGAAGCTGATAACCTGAACTAAATTTTTTTCGTGTATATATTTAAATACAAATTTTGATGCTCTGGTATATATTTATTGCATTTAATAAATAAAGGAACTAAGATTTGAAATTGAATGAAAACTTCTAAAGGTGTATGCATATGTTTTCGAGTAAAAATGAATTTGAATCAAACCATACTTGTCTCCACATTTAATATATCATACTAAGTAGTAGGCTTCTTAAAATATTATAATCTTTCTAATAGTTTCAAGCTCGCTCACATATATATATTTCTATTTCTGGTTTAAATTCTACTTTGGTTTGAAAATTTTGAAATTATTACATTTTGATTTCTAAATTTTAAAGACTATTCTATTTGGATTTTTTTTCTGAATTTTTATTTTCATATTTGAGTTAAAAAGGAAAGAAAAAAAAAAGACTTCTAGTGGCTAGTGATTAGACAGTAAGTTTAATGCTTAGGTGTCGATATGAACTCAATGGAACAATCTTATAATAATCGTTTGAGGTAGATTTAATAATTTTCATGCCTCTAAATAACCAATAGATGTAAATTCAATATATTTATGTCTCTATATTCAACAGTAAAAGATTATCAGATACATTGTGGCGGCCTCAGGAATGAGCATCAGCATGTAATGATGGGTTAAATAAGTTAGAGTGGGGTATTGGATTGGTGGGTTTTACATCGCAGTTTTTAAAGTTTAGGGGTGAAATAAATATTCTGAAATATCAAAATAGTTGGTTTCTTAAGTTCAAAAACTAGAATATATATTTATTTCAAAATAGTTAGAATTTTTTAATTAAAATAGAATAACATTCCTAACAAAAAAAATGAAATTTAAACCTTTTATTTGCATGATTTGCAAAGTTGATTTCTTGATGAAAGATCAATTCATGTCTGGCTTAAATGTATTTTTTTTTTCAATTAAAAAGAAAAAAATGTGATCAAATGGTTTTTTTTTTTTGTTAAATTACGAGTTTAGCCCATAGACTTTTAAGATGGTGTCTAATAGATTCCTAAATCTTAAAAATTGTTCAACAAATCTATAAATTTTAAATATTGTGTATAATAAGTGTTTGAAGTTAAAAAATAACAAGTCATCAAACTCCCCATTTTGTTTCTAATAGATTCATGTCATATTATATCTTTTTAAAAAAATTTATAGAGCAATTAACAATAAAATTAAAAGGTTGTGGTCTCATAAAATACAAATATCAATATTTTTTTATCTTATTCTCAAATTTAAAAGATGTCAAACATAAGAGTAACCTATAAAATATAAATTAAAAGTTCAAAAATTTAAGTTCAAAGACGTGTTAAAGACAACCGTAACAGTTCGTACTAAACTTGTAACTAACTTTTTTTTTCCAAAAACCAAATGGTTGATATATTAAGAAGCTTCTTAGTCCAACTCCGTTGCTTTAAACCTCCTCATGCCTGGCTTATAATAATTCTATTTCCGTTGAATTTTGCTATGATTACTACTAAACAAATTGCAGAAAAAAAAAATCATGTGGTTCCATTTCATCTACTTTCAGTTATATGCTTTAGGAGGATATCTTATCATAAGGTGGGCTTGGAAAAGATGGAAGCCTGAGGACGACGAAGACAAAAAATAACTTTCAAAGTGCAGGTTGATGGTTCGATTTTCACTCCATAATTGTTGAATTAAAAAAAAATTGTTACCATTTTGCCAATTAATTTATAAATTTGAGCCGAGGGAATAAGACTTCAAATGATGCTTTTTTTACTTCATGCATTCATTACTGTACTAAATATTGTTTGTAAATTTGATAATAATAAAAAATAGTGTAAAAGCAAATTAAATGTTTCAAAATTGATTACAATTATACTTGGAAAATGTCTTTCAACTTATTTGAATTTCTATACTACCCTTTGTTG

mRNA sequence

GTAGCGTATTACTTTCCCTGGAGCCGCTAGGGCCCGTCTTGCCTCCACAAAAAGGGGAATTTACCTTCCAAAATCTATGCACTCAAATTTTCACAATTAAGCGAAACGACGATACATTCTTCCGATCAGCGGCGCCGCCGGCTCCTCCGCCGGAATCCGGTCATCTTGTGACATGGCTGAGAACAGAGAGATTATTCATAGAAACCCTAAATATGCGAAGTCGTTGCTGAAAAATCTGCAGAAATTAGGGGAGAAGAAAGAAGAAACTCCGCCAGTGCCACCTGATCAGAAACCTAAAGTCGTCACTGTTCCGGTAACGGAAGTGGTTGCTCCGCCGCCGTTGGCGGCTGAGTGCAAGCGGCCTGGCAAGTTCTCGCATCCGGCTATCCGGTGGTCGTTATATGCTTTAGGAGGATATCTTATCATAAGGTGGGCTTGGAAAAGATGGAAGCCTGAGGACGACGAAGACAAAAAATAACTTTCAAAGTGCAGGTTGATGGTTCGATTTTCACTCCATAATTGTTGAATTAAAAAAAAATTGTTACCATTTTGCCAATTAATTTATAAATTTGAGCCGAGGGAATAAGACTTCAAATGATGCTTTTTTTACTTCATGCATTCATTACTGTACTAAATATTGTTTGTAAATTTGATAATAATAAAAAATAGTGTAAAAGCAAATTAAATGTTTCAAAATTGATTACAATTATACTTGGAAAATGTCTTTCAACTTATTTGAATTTCTATACTACCCTTTGTTG

Coding sequence (CDS)

ATGGCTGAGAACAGAGAGATTATTCATAGAAACCCTAAATATGCGAAGTCGTTGCTGAAAAATCTGCAGAAATTAGGGGAGAAGAAAGAAGAAACTCCGCCAGTGCCACCTGATCAGAAACCTAAAGTCGTCACTGTTCCGGTAACGGAAGTGGTTGCTCCGCCGCCGTTGGCGGCTGAGTGCAAGCGGCCTGGCAAGTTCTCGCATCCGGCTATCCGGTGGTCGTTATATGCTTTAGGAGGATATCTTATCATAAGGTGGGCTTGGAAAAGATGGAAGCCTGAGGACGACGAAGACAAAAAATAA

Protein sequence

MAENREIIHRNPKYAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLAAECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDKK
Homology
[Close]
BLAST of Tan0010477 vs. NCBI nr
Match: XP_022985696.1 (uncharacterized protein LOC111483672 [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 6.6e-26
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 0 

Query: 1   MAENREIIHRNPKYAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLAAE 60
           M E R+I+  NPK A    +N  K G+ +EE  P+PP QKP VVT+P +EV  PPPLAAE
Sbjct: 1   MVEYRDIVPTNPKVAWFWPRNRDKSGDNEEEPSPMPP-QKPNVVTLPGSEVAPPPPLAAE 60

Query: 61  CKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           CKRPGKFSHPAIRWSLYALGG++I RWA KRWK  +DE K
Sbjct: 61  CKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGK 99

[Close]
BLAST of Tan0010477 vs. NCBI nr
Match: XP_023553666.1 (uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 60/100 (60.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 1   MAENREIIHRNPKYAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLAAE 60
           M +NR+I+  +PK   S  +NL KLG+ +++T P+PP QKP +VT+P ++V  PPPL AE
Sbjct: 17  MVDNRDIVPTDPKVTWSWSRNLNKLGDNQQQTSPLPP-QKPNLVTLPGSQVPPPPPLTAE 76

Query: 61  CKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           CKRPGKFSHPAIRW LYALGG+LI RWA K+WK  +DE K
Sbjct: 77  CKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 115

[Close]
BLAST of Tan0010477 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 123.6 bits (309), Expect = 9.5e-25
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 1   MAENREIIHRNPK--YAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLA 60
           M +NR+I+  NP+  ++ S  +NL KLG+ +++T P+PP +KP +VT+P +EV  PPPL 
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPP-RKPNLVTLPGSEVAPPPPLT 76

Query: 61  AECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           AECKRPGKFSHPAIRW LYALGG+LI RWA K+WK  +DE K
Sbjct: 77  AECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]
BLAST of Tan0010477 vs. NCBI nr
Match: KAG6601203.1 (hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 1   MAENREIIHRNPK--YAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLA 60
           M +NR+I+  NP+  ++ S  +NL KLG+ +++T P+PP +KP +VT+P +EV  PPPL 
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPP-RKPNLVTLPGSEVPPPPPLT 76

Query: 61  AECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           AECKRPGKFSHPAIRW LYALGG+LI RWA K+WK  +DE K
Sbjct: 77  AECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]
BLAST of Tan0010477 vs. NCBI nr
Match: KAG7031999.1 (hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 1   MAENREIIHRNPK--YAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLA 60
           M +NR+I+  NP+  ++ S  +NL KLG+ +++T P+PP +KP +VT+P +EV  PPPL 
Sbjct: 1   MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPP-RKPNLVTLPGSEVPPPPPLT 60

Query: 61  AECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           AECKRPGKFSHPAIRW LYALGG+LI RWA K+WK  +DE K
Sbjct: 61  AECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 101

[Close]
BLAST of Tan0010477 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-26
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 0 

Query: 1   MAENREIIHRNPKYAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLAAE 60
           M E R+I+  NPK A    +N  K G+ +EE  P+PP QKP VVT+P +EV  PPPLAAE
Sbjct: 1   MVEYRDIVPTNPKVAWFWPRNRDKSGDNEEEPSPMPP-QKPNVVTLPGSEVAPPPPLAAE 60

Query: 61  CKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           CKRPGKFSHPAIRWSLYALGG++I RWA KRWK  +DE K
Sbjct: 61  CKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGK 99

[Close]
BLAST of Tan0010477 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.6e-25
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 1   MAENREIIHRNPK--YAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLA 60
           M +NR+I+  NP+  ++ S  +NL KLG+ +++T P+PP +KP +VT+P +EV  PPPL 
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPP-RKPNLVTLPGSEVAPPPPLT 76

Query: 61  AECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           AECKRPGKFSHPAIRW LYALGG+LI RWA K+WK  +DE K
Sbjct: 77  AECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]
BLAST of Tan0010477 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 0 

Query: 1   MAENREIIHRNPKYAKSLLKNLQK--LGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLA 60
           MAEN+E I +NPK    +L N ++  + +KKEET    P +KP VVT+P + VV+PPP+ 
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEET---NPPEKPDVVTIPASGVVSPPPVK 60

Query: 61  AECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDKK 102
           AE K PGKFSHPA+ W L ALGG+LII WAW++W+P+DDE KK
Sbjct: 61  AEFKFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

[Close]
BLAST of Tan0010477 vs. ExPASy TrEMBL
Match: A0A0A0KRF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = 0 

Query: 1   MAENREIIHRNPKYAKSLLKNLQKLG---EKKEETPPVPPDQKPKVVTVPVTEVVAPPPL 60
           MAEN E I RNPK    +  N QKL    +KKEE     P+ K +VVT+P  EVV PPP+
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEIN--LPETKSEVVTIPAPEVVPPPPI 60

Query: 61  AAECKRPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDKK 102
            AE K  GKFSHPAI WSL ALGG+ II++AWK+WKP+DDE KK
Sbjct: 61  KAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKK 102

[Close]
BLAST of Tan0010477 vs. ExPASy TrEMBL
Match: A0A6J1CDG9 (uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010218 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 53/96 (55.21%), Postives = 61/96 (63.54%), Query Frame = 0 

Query: 10  RNPKYAKSLLKNLQKLGEKKEETPPVPPDQKPKVVTVPVTEVVAPPPLAAECKRPGKFSH 69
           RNP       K   KLG++ E    +   +KP VV VP  +VVAPPPL AE K P KFSH
Sbjct: 6   RNPNNLAPENKTAAKLGDQVE---GISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSH 65

Query: 70  PAIRWSLYALGGYLIIRWAWKRWKPE----DDEDKK 102
           PAIRW LY+LGGYLI+RWAW RWK      DD+ KK
Sbjct: 66  PAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKK 98

[Close]
BLAST of Tan0010477 vs. TAIR 10
Match: AT3G52230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 0 

Query: 42  KVVTVPVTEVVAPPPLAAECK-RPGKFSHPAIRWSLYALGGYLIIRWAWKRWKPEDDEDK 101
           + VT P     +  P+  E +   G+ S+  I W +YALGG+L+++WAW RW   ++   
Sbjct: 61  ETVTFPYNPPKSAEPIKFEAEPSSGRTSNSVILWQVYALGGFLVLKWAWARWNERNERSD 120

The following BLAST results are available for this feature:
BLAST of Tan0010477 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0010477 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022985696.16.6e-2664.00uncharacterized protein LOC111483672 [Cucurbita maxima][more]
XP_023553666.11.5e-2560.00uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo][more]
XP_022957161.19.5e-2558.82uncharacterized protein LOC111458630 [Cucurbita moschata][more]
KAG6601203.11.6e-2458.82hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031999.11.6e-2458.82hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Tan0010477 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J8Z13.2e-2664.00uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672... [more]
A0A6J1GYG54.6e-2558.82uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586... [more]
A0A1S3BGK53.6e-2256.31uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=... [more]
A0A0A0KRF31.4e-2158.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1[more]
A0A6J1CDG91.0e-1655.21uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
BLAST of Tan0010477 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52230.12.8e-0634.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36374OS01G0969000 PROTEINcoord: 26..101
NoneNo IPR availablePANTHERPTHR36374:SF1OS01G0969000 PROTEINcoord: 26..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010477.1Tan0010477.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane