Tan0010338 (gene) Snake gourd v1

Overview


Name	Tan0010338
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG09: 2948337 .. 2949207 (+)
RNA-Seq Expression	Tan0010338
Synteny	Tan0010338

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACGTCGACAAAGACGAATGGATTAAAGCTATGAACCAGGAAATGCAGTCGATGTACTTCAATTCCGTCTGGGAGCTTGTAGACCAACCAGATGGGGTCAAACCTATTGGTTGCAAGTGGATCTACAAGCGTAAACGTGGCGTAGATGGGAAGGTACAAACCTTCAAAGCCAGACTAGTTGCAAAATGGGTTTACCGAGGTTGAAGGGGTTGACTATGAGGAGACCTTTTCTCCTGTTGCCATGGTAAAGTCTATCAGGATCCTTTTGGCCATTGCCACATATTATGACTATGAGGTATGGCAGATGGACGTCAAGACGACCTTTCTGAATGGCAATTTTGACGAGACCATCTACATGGACTAACACAAGGGGTTCATTGCCCAAGGCCAAGAACAAAAAGTTTGACGGCTTCAAAGGTCTATTTATGGACTGAAACAAGCCTCGAGGTCTTGGAATATAAGGTTTGATGAGGCTATCAAATCTTATGGTTTTAATTAGAATGTTGATGAGCCTTGTGTTTACAAGAAAATCATCAACTGCACTGTCGCATTTCTGATATTGTATGTGGATGATATCCTGCTCATTGGGAATGACGTAGGATTTCTTACTAACATTAAGGAATGGTTGGCTTCGCAATTCCAAATGAAAGATTTGGGAGAGGCCCAGTATGTTCTAGGTATGCAGATAGTCCAAAACCAGAAGAACAAAACACTAGCCATGTCTGAAGCATCTTACATTGACAAGATGTTGTCTCGGTATAAGATGCAAAACTCCAAGAAGGGTTTGCTACCTTTCAGGCATGGGGTTCACTTGTTTAAGGATCAATGTCCTAAGACGCCTCAAGAGGTTGAGGATATGAGATGA

mRNA sequence

ATGGCTGACGTCGACAAAGACGAATGGATTAAAGCTATGAACCAGGAAATGCAGTCGATGTACTTCAATTCCGTCTGGGAGCTTGTAGACCAACCAGATGGGGTCAAACCTATTGGTTGCAAGTGGATCTACAAGCGTAAACGTGGCGTAGATGGGAAGAATGTTGATGAGCCTTGTGTTTACAAGAAAATCATCAACTGCACTGTCGCATTTCTGATATTGTATGTGGATGATATCCTGCTCATTGGGAATGACGTAGGATTTCTTACTAACATTAAGGAATGGTTGGCTTCGCAATTCCAAATGAAAGATTTGGGAGAGGCCCAGTATGTTCTAGGTATGCAGATAGTCCAAAACCAGAAGAACAAAACACTAGCCATGTCTGAAGCATCTTACATTGACAAGATGTTGTCTCGGTATAAGATGCAAAACTCCAAGAAGGGTTTGCTACCTTTCAGGCATGGGGTTCACTTGTTTAAGGATCAATGTCCTAAGACGCCTCAAGAGGTTGAGGATATGAGATGA

Coding sequence (CDS)

ATGGCTGACGTCGACAAAGACGAATGGATTAAAGCTATGAACCAGGAAATGCAGTCGATGTACTTCAATTCCGTCTGGGAGCTTGTAGACCAACCAGATGGGGTCAAACCTATTGGTTGCAAGTGGATCTACAAGCGTAAACGTGGCGTAGATGGGAAGAATGTTGATGAGCCTTGTGTTTACAAGAAAATCATCAACTGCACTGTCGCATTTCTGATATTGTATGTGGATGATATCCTGCTCATTGGGAATGACGTAGGATTTCTTACTAACATTAAGGAATGGTTGGCTTCGCAATTCCAAATGAAAGATTTGGGAGAGGCCCAGTATGTTCTAGGTATGCAGATAGTCCAAAACCAGAAGAACAAAACACTAGCCATGTCTGAAGCATCTTACATTGACAAGATGTTGTCTCGGTATAAGATGCAAAACTCCAAGAAGGGTTTGCTACCTTTCAGGCATGGGGTTCACTTGTTTAAGGATCAATGTCCTAAGACGCCTCAAGAGGTTGAGGATATGAGATGA

Protein sequence

MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKNVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKDQCPKTPQEVEDMR

Homology

[Close]

BLAST of Tan0010338 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-19
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 53   KNVDEPCVY-KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYV 112
            K   +PCVY K+        L+LYVDD+L++G D G +  +K  L+  F MKDLG AQ +
Sbjct: 985  KTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQI 1044

Query: 113  LGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKDQCPKTPQEVE 172
            LGM+IV+ + ++ L +S+  YI+++L R+ M+N+K    P    + L K  CP T +E  
Sbjct: 1045 LGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG 1104

Query: 173  DM 174
            +M
Sbjct: 1105 NM 1106

[Close]

BLAST of Tan0010338 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 55.5 bits (132), Expect = 7.2e-07
Identity = 30/89 (33.71%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 59   CVY---KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQ 118
            C+Y   K  IN  + +++LYVDD+++   D+  + N K +L  +F+M DL E ++ +G++
Sbjct: 1069 CIYILDKGNINENI-YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIR 1128

Query: 119  IVQNQKNKTLAMSEASYIDKMLSRYKMQN 145
            I + Q++K + +S+++Y+ K+LS++ M+N
Sbjct: 1129 I-EMQEDK-IYLSQSAYVKKILSKFNMEN 1154

[Close]

BLAST of Tan0010338 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.9e-05
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 71  FLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEA 130
           +L+LYVDDILL G+    L  +   L+S F MKDLG   Y LG+QI  +     L +S+ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 131 SYIDKMLSRYKMQNSK 147
            Y +++L+   M + K
Sbjct: 62  KYAEQILNNAGMLDCK 75

[Close]

BLAST of Tan0010338 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 68   TVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAM 127
            ++ ++++YVDDIL+ GND   L N  + L+ +F +KD  E  Y LG++    +    L +
Sbjct: 1143 SIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIE--AKRVPTGLHL 1202

Query: 128  SEASYIDKMLSRYKMQNSKKGLLP 152
            S+  YI  +L+R  M  +K    P
Sbjct: 1203 SQRRYILDLLARTNMITAKPVTTP 1224

[Close]

BLAST of Tan0010338 vs. NCBI nr
Match: TYK16417.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.4e-70
Identity = 139/219 (63.47%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK------- 60
           M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR   GK       
Sbjct: 40  MNDVDKDQWVKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKPEGFITQ 99

Query: 61  --------------------------------------NVDEPCVYKKIINCTVAFLILY 120
                                                 NVDEPCVYKKI    VAFL+LY
Sbjct: 100 GQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLY 159

Query: 121 VDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDK 175
           VDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDK
Sbjct: 160 VDDILLIRNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK 219

[Close]

BLAST of Tan0010338 vs. NCBI nr
Match: KAA0062926.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.4e-70
Identity = 139/219 (63.47%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK------- 60
           M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR   GK       
Sbjct: 40  MNDVDKDQWVKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKPEGFITQ 99

Query: 61  --------------------------------------NVDEPCVYKKIINCTVAFLILY 120
                                                 NVDEPCVYKKI    VAFL+LY
Sbjct: 100 GQKQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLY 159

Query: 121 VDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDK 175
           VDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDK
Sbjct: 160 VDDILLIRNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK 219

[Close]

BLAST of Tan0010338 vs. NCBI nr
Match: KAA0025358.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 138/227 (60.79%), Postives = 157/227 (69.16%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK------- 60
           M DVDKD+W+KAM+ EM+SMYFNSVWELVD P+GVKPIGCKWIYKRKR   GK       
Sbjct: 58  MNDVDKDQWVKAMDLEMESMYFNSVWELVDVPEGVKPIGCKWIYKRKRDSAGKSIRILLS 117

Query: 61  ----------------------------------------------NVDEPCVYKKIINC 120
                                                         NVDEPCVYKKI   
Sbjct: 118 IATFYDYETWQMDVKTAFLNGNLEESIFMSQPEGFDTAIKSYGFDQNVDEPCVYKKINKG 177

Query: 121 TVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAM 175
            VAFL+LYVDDILLIGNDVG LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNK LA+
Sbjct: 178 KVAFLVLYVDDILLIGNDVGCLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKMLAL 237

[Close]

BLAST of Tan0010338 vs. NCBI nr
Match: KAA0051787.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21451.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 135/205 (65.85%), Postives = 155/205 (75.61%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKR------------ 60
           M DVD ++WIK M+ E++SMY NSVW LVDQP+ VKPIGCKWIYKRKR            
Sbjct: 93  MNDVDCNQWIKVMDLEIESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQVGKMDVKTAF 152

Query: 61  --------------------GVDGKNVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGF 120
                               G + KNVDEPCVYK+IIN TVAFL+LYVDDILLIGNDVG 
Sbjct: 153 LNGNLEKSIYMIQPEGFIQKGQEQKNVDEPCVYKRIINSTVAFLVLYVDDILLIGNDVGH 212

Query: 121 LTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKG 174
           L +IKEWLA+QFQMKDLG AQYVLG+QIV+N+KNK LAMS+ SYIDKMLSRYKMQNSKK 
Sbjct: 213 LIDIKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKNLAMSQTSYIDKMLSRYKMQNSKKV 272

[Close]

BLAST of Tan0010338 vs. NCBI nr
Match: TYK00851.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 5.4e-68
Identity = 135/212 (63.68%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 3   DVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK--------- 62
           +VD D+WIK ++ EM+SMY NSVW LVDQ + VKPIGCKWIYKRKR   GK         
Sbjct: 439 NVDCDQWIKVIDLEMESMYSNSVWTLVDQQNDVKPIGCKWIYKRKRDQAGKVQTFKARLV 498

Query: 63  --------------------------------NVDEPCVYKKIINCTVAFLILYVDDILL 122
                                           NVDEPCVYK+IIN TVAFL++YVDDILL
Sbjct: 499 MDVKTAFLNRSLEESIYMVQPEGFIQKGQEQNNVDEPCVYKRIINSTVAFLVMYVDDILL 558

Query: 123 IGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYK 174
           IGNDVG LT+IK+WLA+QFQ+KDLG AQYVLG+QIV+N+KNKTLAMS+ SYIDKMLSRYK
Sbjct: 559 IGNDVGHLTDIKKWLATQFQLKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYK 618

[Close]

BLAST of Tan0010338 vs. ExPASy TrEMBL
Match: A0A5D3CWZ1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002130 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 139/219 (63.47%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK------- 60
           M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR   GK       
Sbjct: 40  MNDVDKDQWVKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKPEGFITQ 99

Query: 61  --------------------------------------NVDEPCVYKKIINCTVAFLILY 120
                                                 NVDEPCVYKKI    VAFL+LY
Sbjct: 100 GQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLY 159

Query: 121 VDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDK 175
           VDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDK
Sbjct: 160 VDDILLIRNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK 219

[Close]

BLAST of Tan0010338 vs. ExPASy TrEMBL
Match: A0A5A7V901 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00180 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 139/219 (63.47%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK------- 60
           M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR   GK       
Sbjct: 40  MNDVDKDQWVKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKPEGFITQ 99

Query: 61  --------------------------------------NVDEPCVYKKIINCTVAFLILY 120
                                                 NVDEPCVYKKI    VAFL+LY
Sbjct: 100 GQKQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLY 159

Query: 121 VDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDK 175
           VDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDK
Sbjct: 160 VDDILLIRNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK 219

[Close]

BLAST of Tan0010338 vs. ExPASy TrEMBL
Match: A0A5A7UBK6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001230 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 135/205 (65.85%), Postives = 155/205 (75.61%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKR------------ 60
           M DVD ++WIK M+ E++SMY NSVW LVDQP+ VKPIGCKWIYKRKR            
Sbjct: 93  MNDVDCNQWIKVMDLEIESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQVGKMDVKTAF 152

Query: 61  --------------------GVDGKNVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGF 120
                               G + KNVDEPCVYK+IIN TVAFL+LYVDDILLIGNDVG 
Sbjct: 153 LNGNLEKSIYMIQPEGFIQKGQEQKNVDEPCVYKRIINSTVAFLVLYVDDILLIGNDVGH 212

Query: 121 LTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKG 174
           L +IKEWLA+QFQMKDLG AQYVLG+QIV+N+KNK LAMS+ SYIDKMLSRYKMQNSKK 
Sbjct: 213 LIDIKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKNLAMSQTSYIDKMLSRYKMQNSKKV 272

[Close]

BLAST of Tan0010338 vs. ExPASy TrEMBL
Match: A0A5A7SGT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00420 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 138/227 (60.79%), Postives = 157/227 (69.16%), Query Frame = 0


Query: 1   MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK------- 60
           M DVDKD+W+KAM+ EM+SMYFNSVWELVD P+GVKPIGCKWIYKRKR   GK       
Sbjct: 58  MNDVDKDQWVKAMDLEMESMYFNSVWELVDVPEGVKPIGCKWIYKRKRDSAGKSIRILLS 117

Query: 61  ----------------------------------------------NVDEPCVYKKIINC 120
                                                         NVDEPCVYKKI   
Sbjct: 118 IATFYDYETWQMDVKTAFLNGNLEESIFMSQPEGFDTAIKSYGFDQNVDEPCVYKKINKG 177

Query: 121 TVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAM 175
            VAFL+LYVDDILLIGNDVG LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNK LA+
Sbjct: 178 KVAFLVLYVDDILLIGNDVGCLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKMLAL 237

[Close]

BLAST of Tan0010338 vs. ExPASy TrEMBL
Match: A0A5D3BM03 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00120 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.6e-68
Identity = 135/212 (63.68%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 3   DVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK--------- 62
           +VD D+WIK ++ EM+SMY NSVW LVDQ + VKPIGCKWIYKRKR   GK         
Sbjct: 439 NVDCDQWIKVIDLEMESMYSNSVWTLVDQQNDVKPIGCKWIYKRKRDQAGKVQTFKARLV 498

Query: 63  --------------------------------NVDEPCVYKKIINCTVAFLILYVDDILL 122
                                           NVDEPCVYK+IIN TVAFL++YVDDILL
Sbjct: 499 MDVKTAFLNRSLEESIYMVQPEGFIQKGQEQNNVDEPCVYKRIINSTVAFLVMYVDDILL 558

Query: 123 IGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYK 174
           IGNDVG LT+IK+WLA+QFQ+KDLG AQYVLG+QIV+N+KNKTLAMS+ SYIDKMLSRYK
Sbjct: 559 IGNDVGHLTDIKKWLATQFQLKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYK 618

[Close]

BLAST of Tan0010338 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 49.7 bits (117), Expect = 2.8e-06
Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 0


Query: 9   WIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDG 53
           W  AM+ E+ +M     WE+   P   KPIGCKW+YK K   DG
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141

[Close]

BLAST of Tan0010338 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.8e-06
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 71  FLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEA 130
           +L+LYVDDILL G+    L  +   L+S F MKDLG   Y LG+QI  +     L +S+ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 131 SYIDKMLSRYKMQNSK 147
            Y +++L+   M + K
Sbjct: 62  KYAEQILNNAGMLDCK 75

[Close]

BLAST of Tan0010338 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 44.7 bits (104), Expect = 9.0e-05
Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = 0


Query: 9  WIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDG 53
          W +AM +E+ ++  N  W LV  P     +GCKW++K K   DG
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDG 83

The following BLAST results are available for this feature:

BLAST of Tan0010338 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.8e-19	39.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.2e-07	33.71	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	3.9e-05	39.47	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	2.0e-04	33.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Tan0010338 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16417.1	3.4e-70	63.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062926.1	3.4e-70	63.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025358.1	4.1e-68	60.79	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051787.1	4.1e-68	65.85	gag/pol protein [Cucumis melo var. makuwa] >TYK21451.1 gag/pol protein [Cucumis ...	[more]
TYK00851.1	5.4e-68	63.68	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0010338 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWZ1	1.6e-70	63.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00213...	[more]
A0A5A7V901	1.6e-70	63.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0018...	[more]
A0A5A7UBK6	2.0e-68	65.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G0012...	[more]
A0A5A7SGT6	2.0e-68	60.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G004...	[more]
A0A5D3BM03	2.6e-68	63.68	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0012...	[more]

BLAST of Tan0010338 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.8e-06	45.45	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.8e-06	39.47	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	9.0e-05	38.64	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 71..151 e-value: 4.5E-14 score: 52.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 57..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010338.1	Tan0010338.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0046872	metal ion binding