Tan0010305 (gene) Snake gourd v1

Overview
NameTan0010305
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG10: 46055727 .. 46057143 (+)
RNA-Seq ExpressionTan0010305
SyntenyTan0010305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACTTTGCGCTATGCCATACGATCTCGTGGATTGCTTCGATTCCTTGACGCTATGTGGGAGAACTCAACCAAGCAATCGGTGGTGAATCGGAGGATTCCATTTTTGAGAGAAAGCAAGGAGAGTGGGAAAGCTAACCTACCCTTCCGTTTCTTTGAATCGACCTTCGCCCAAGAGTTCGGGCATCTACGCCAAGAACGTGCTTTCGACATCGAGTTTCAAATATGCAAAGAGATCACTACTTTGATACGGTCGGTTCCATTGGTCATTCTTCGGAGAAGTCCCAAATCGAACTAGTCAATTGAGAGGATCATTGCTAACCCATTGGCTTCATCGAGATCGTCTCGCGCATAAGAGGGCATTTTCGAATGAGAAGATTCTCTTTCTACACCGACGACATATCCCGCCTCTTCCTTCCTTGCCCGCCTCGTAATATTCCTTCCCGGTGGGACGAAGTCGCATTGATTTCAATTGATTGAATCGGTTACAGGTCTTCGCTGAAAAGTGAGGCTTTCAAGACGAGTAGACCTTAGTTACCCGCTTATTGGGACTGCAAGAAGTCGAGTTTCTTTTGCTTTCTTTACACGATGAGTTGGAAAAAGAAAAAGTCAAAGCAGCAGACAAGTAGTCCCATTATCCACCTTTAGAGACATTTTTGAAGAAGGTTAGCTTTAACACATCTTGGCCAAGCAGAAAAGCAGAAATAAATGCTTTGTCGGTTGAAGGTGCTCTCTTCTCTACTCCTAGACATAGGAGAGAGGCTCACTCGTCATCCATAGTATCCTCTCGCATCTTATGCATCTTCTGCGCTCTCTCTTGGTTTCAGGAGCTCAGTGAGCAAGAGTTCCCCCGAAGTGGCTTTGACGGAGGGAAGTGGGCTTCATTCAATGGAATGCTTTGTTGGTTCAACTTTCAAAGGGGTCAGTTTTTCGGTTTAGTGTGGAGGAGGCGCTCTTTGTTGACCTTTCAGAGACATGTTGTAATGTGAATCTGGCAAGATAATAGATATTGAGTCGATGATCAATCCGACGTTCAATCCTTCTAGAGATGGTGATCGGACTTGTTAAGATCTCTTCTATGCCGAGAATCATCCGTGAATCCCCATTTTGATTGACCTTGACCGGTCATTGCTTTGGAAAATAGGGCCCCACCTCGTTGGCCCCCAATTCTCAACCCCGACCTACACAAGTGGTTTTAGAACCCACATTTTGAAAAGTTCTCATTAGGTTCTTAGTAGCGATCGGCGACTTTTTATTCTTTTACTTCACATAGCTTTTCGTCTCCTTGATAGCTGGAAGTTCTCCAAAAGTATGAAAAGTCGGAGGACTTTGTACCATCCATTCCAAAGGTGGTTGAATTTGCTTCAACAACCCAAGGACTTGGAGCACATCTTTTGTTATTTCCACTCGCTTGA

mRNA sequence

ATGTCGACTTTGCGCTATGCCATACGATCTCGTGGATTGCTTCGATTCCTTGACGCTATGTGGGAGAACTCAACCAAGCAATCGGTGGTGAATCGGAGGATTCCATTTTTGAGAGAAAGCAAGGAGAGTGGGAAAGCTAACCTACCCTTCCGTTTCTTTGAATCGACCTTCGCCCAAGAGTTCGGGCATCTACGCCAAGAACGTGCTTTCGACATCGAGTTTCAAATATGCAAAGAGATCACTACTTTGATACGGAGCTCAGTGAGCAAGAGTTCCCCCGAAGTGGCTTTGACGGAGGGAAGTGGGCTTCATTCAATGGAATGCTTTGTTGGTTCAACTTTCAAAGGGCTGGAAGTTCTCCAAAAGTATGAAAAGTCGGAGGACTTTGTACCATCCATTCCAAAGGTGGTTGAATTTGCTTCAACAACCCAAGGACTTGGAGCACATCTTTTGTTATTTCCACTCGCTTGA

Coding sequence (CDS)

ATGTCGACTTTGCGCTATGCCATACGATCTCGTGGATTGCTTCGATTCCTTGACGCTATGTGGGAGAACTCAACCAAGCAATCGGTGGTGAATCGGAGGATTCCATTTTTGAGAGAAAGCAAGGAGAGTGGGAAAGCTAACCTACCCTTCCGTTTCTTTGAATCGACCTTCGCCCAAGAGTTCGGGCATCTACGCCAAGAACGTGCTTTCGACATCGAGTTTCAAATATGCAAAGAGATCACTACTTTGATACGGAGCTCAGTGAGCAAGAGTTCCCCCGAAGTGGCTTTGACGGAGGGAAGTGGGCTTCATTCAATGGAATGCTTTGTTGGTTCAACTTTCAAAGGGCTGGAAGTTCTCCAAAAGTATGAAAAGTCGGAGGACTTTGTACCATCCATTCCAAAGGTGGTTGAATTTGCTTCAACAACCCAAGGACTTGGAGCACATCTTTTGTTATTTCCACTCGCTTGA

Protein sequence

MSTLRYAIRSRGLLRFLDAMWENSTKQSVVNRRIPFLRESKESGKANLPFRFFESTFAQEFGHLRQERAFDIEFQICKEITTLIRSSVSKSSPEVALTEGSGLHSMECFVGSTFKGLEVLQKYEKSEDFVPSIPKVVEFASTTQGLGAHLLLFPLA
Homology
[Close]
BLAST of Tan0010305 vs. NCBI nr
Match: KAF4400618.1 (hypothetical protein G4B88_023026 [Cannabis sativa])

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-08
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 12  GLLRFLDAMWENSTKQSVVNRRIPFLRESKESGKANLPF 51
           GLLRFLDAMWENSTKQSVV++R+ FLRESKESGKAN PF
Sbjct: 177 GLLRFLDAMWENSTKQSVVHQRLKFLRESKESGKAN-PF 214

[Close]
BLAST of Tan0010305 vs. ExPASy TrEMBL
Match: A0A7J6I0U9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023026 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-08
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 12  GLLRFLDAMWENSTKQSVVNRRIPFLRESKESGKANLPF 51
           GLLRFLDAMWENSTKQSVV++R+ FLRESKESGKAN PF
Sbjct: 177 GLLRFLDAMWENSTKQSVVHQRLKFLRESKESGKAN-PF 214

The following BLAST results are available for this feature:
BLAST of Tan0010305 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0010305 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4400618.17.3e-0887.18hypothetical protein G4B88_023026 [Cannabis sativa][more]
BLAST of Tan0010305 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6I0U93.5e-0887.18Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023026 PE=4 SV=1[more]
BLAST of Tan0010305 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010305.1Tan0010305.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane