Tan0010243 (gene) Snake gourd v1

Overview


Name	Tan0010243
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CCHC-type domain-containing protein
Location	LG08: 12290144 .. 12290527 (-)
RNA-Seq Expression	Tan0010243
Synteny	Tan0010243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTTTTATGAGTCTAGTAAAGATTGGCGTGGATAAATTTGACGGAATGATGAACTTTTGCTTGTGGCAAATGCAAGTCAAAGATGTGCTGATACAATTTGGGTTACACAAGGCTTTGAAGGGAAGATTGAGTTGTGGTGTTCTTGAAAAGTTAAGCAGTGATTGTGGTCCAATAGAGTCTAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCAACATAAGTGATGAAGAATGGGATGAATTAGATTTGAGAGTTACAAGTGCAATAAGATTAAATTTCACTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAGGTTTGGGAGAAGTTTGAAACGATGTATCAGGAAAAGAACATCTCAAATTAG

mRNA sequence

ATGTCAAGTTTTATGAGTCTAGTAAAGATTGGCGTGGATAAATTTGACGGAATGATGAACTTTTGCTTGTGGCAAATGCAAGTCAAAGATGTGCTGATACAATTTGGGTTACACAAGGCTTTGAAGGGAAGATTGAGTTGTGGTGTTCTTGAAAAGTTAAGCAGTGATTGTGGTCCAATAGAGTCTAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCAACATAAGTGATGAAGAATGGGATGAATTAGATTTGAGAGTTACAAGTGCAATAAGATTAAATTTCACTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAGGTTTGGGAGAAGTTTGAAACGATGTATCAGGAAAAGAACATCTCAAATTAG

Coding sequence (CDS)

ATGTCAAGTTTTATGAGTCTAGTAAAGATTGGCGTGGATAAATTTGACGGAATGATGAACTTTTGCTTGTGGCAAATGCAAGTCAAAGATGTGCTGATACAATTTGGGTTACACAAGGCTTTGAAGGGAAGATTGAGTTGTGGTGTTCTTGAAAAGTTAAGCAGTGATTGTGGTCCAATAGAGTCTAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCAACATAAGTGATGAAGAATGGGATGAATTAGATTTGAGAGTTACAAGTGCAATAAGATTAAATTTCACTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAGGTTTGGGAGAAGTTTGAAACGATGTATCAGGAAAAGAACATCTCAAATTAG

Protein sequence

MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEKNISN

Homology

[Close]

BLAST of Tan0010243 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-11
Identity = 40/123 (32.52%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 5   MSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSG 64
           MS VK  V KF+G   F  WQ +++D+LIQ GLHK L                  ++S  
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL-----------------DVDS-- 60

Query: 65  GSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEKN 124
                 K   +  E+W +LD R  SAIRL+ + +++ N+    TA+ +W + E++Y  K 
Sbjct: 61  -----KKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKT 99

Query: 125 ISN 128
           ++N
Sbjct: 121 LTN 99

[Close]

BLAST of Tan0010243 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 92/127 (72.44%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPI 60
           MS FMS VKI V+KFDGM+NF LWQ+QVKDVLIQ  LHKALKGR S G  EKLS D GP+
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMY 120
           ESSGGSSRGSKKS++S E+W+E+DLR  SAIR +  KNILANVH ISTAKE+WEK E +Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QEKNISN 128
           Q K ISN
Sbjct: 415 QAKGISN 421

[Close]

BLAST of Tan0010243 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 69/127 (54.33%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPI 60
           MS F S VK  V+KFDG +NF LWQ+QVKDVLIQ GLHKAL+G++S    EK        
Sbjct: 1   MSKFSSAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEK-------- 60

Query: 61  ESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMY 120
                      +S++SD +W+ELDLR  S IRL+  KN+LANV GISTAKE+W+K E +Y
Sbjct: 61  ----------SESSMSDGDWEELDLRAASTIRLSLAKNVLANVQGISTAKELWKKLEGLY 109

Query: 121 QEKNISN 128
           Q K ISN
Sbjct: 121 QAKGISN 109

[Close]

BLAST of Tan0010243 vs. NCBI nr
Match: KAF3615230.1 (hypothetical protein FXO37_35592 [Capsicum annuum])

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-26
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 9   KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSR 68
           K  ++KFDG +NF LWQ+QVKDVLIQ GLHKALK RL+ G  +K S           SS+
Sbjct: 4   KFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERLTSGKGDKDS-------EKSESSK 63

Query: 69  GSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEKNISN 128
            SKK  I+DEEW+ELD++  S IRL   KN+LANV G+ST KE+WEK E +YQ K+ISN
Sbjct: 64  DSKKFRINDEEWEELDMKAASQIRLCLAKNVLANVIGLSTTKELWEKLEELYQTKSISN 115

[Close]

BLAST of Tan0010243 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 2   SSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIE 61
           S   + ++  V+KFDG +NF LWQ+QVKDVLIQ GLHKALKGR +     ++SSD    +
Sbjct: 4   SKISNSIRYEVEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPT----PEVSSDTSVTD 63

Query: 62  SSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQ 121
            +        +S +SDE+W++LDLR  SAIRL   KN+LAN+HGISTAK++WEK E +YQ
Sbjct: 64  QT------KSRSVMSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELYQ 119

Query: 122 EKNISN 128
            K +SN
Sbjct: 124 TKGVSN 119

[Close]

BLAST of Tan0010243 vs. NCBI nr
Match: KAF3622233.1 (hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical protein FXO37_28487 [Capsicum annuum])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-25
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 9   KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSR 68
           K  ++KFDG +NF +WQ+QVKDVLIQ GLHKALK R +    EK + D    E    SS+
Sbjct: 73  KFEIEKFDGRINFGVWQVQVKDVLIQSGLHKALKERPTS---EKGNKDSEKSE----SSK 132

Query: 69  GSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEKNISN 128
            S+KS ISDEEW+ELD++  S IRL   KN+LANV G+ST KE+WEK E +YQ K+ISN
Sbjct: 133 DSEKSKISDEEWEELDMKAASQIRLYLAKNVLANVIGLSTTKELWEKLEELYQTKSISN 184

[Close]

BLAST of Tan0010243 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.8e-41
Identity = 92/127 (72.44%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPI 60
           MS FMS VKI V+KFDGM+NF LWQ+QVKDVLIQ  LHKALKGR S G  EKLS D GP+
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMY 120
           ESSGGSSRGSKKS++S E+W+E+DLR  SAIR +  KNILANVH ISTAKE+WEK E +Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QEKNISN 128
           Q K ISN
Sbjct: 415 QAKGISN 421

[Close]

BLAST of Tan0010243 vs. ExPASy TrEMBL
Match: A0A2G2YJH4 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 68/124 (54.84%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 4   FMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESS 63
           +M   K  ++KFDG +NF LWQ+QVKDVLIQ GLHKALK R + G   K   D    E  
Sbjct: 245 YMMGTKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSG---KGDKDSKKFE-- 304

Query: 64  GGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEK 123
             SS  S+KS ISDEEW+ELD++V S IRL   K +L NV G+ST K++WEK E +YQ K
Sbjct: 305 --SSEDSEKSRISDEEWEELDMKVESQIRLCLAKYVLTNVIGLSTTKKLWEKLEELYQTK 361

Query: 124 NISN 128
           +ISN
Sbjct: 365 SISN 361

[Close]

BLAST of Tan0010243 vs. ExPASy TrEMBL
Match: A0A2G3AMB5 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 9   KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIES-SGGSS 68
           K  ++KFDG +NF LWQ+QVKDVLIQ GL+KALK        E+ +S+ G  +S    SS
Sbjct: 211 KFEIEKFDGRINFDLWQVQVKDVLIQSGLYKALK--------ERPTSEKGDKDSEKSQSS 270

Query: 69  RGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEKNISN 128
           + S+K  ISDEEW+ELD++  S IRL   KN+LANV G+ST KE+WEK E +YQ K++ N
Sbjct: 271 KDSEKFRISDEEWEELDMKAASPIRLFLAKNVLANVIGLSTTKELWEKLEELYQTKSLKN 322

[Close]

BLAST of Tan0010243 vs. ExPASy TrEMBL
Match: A0A444X3K2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.1e-23
Identity = 64/127 (50.39%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPI 60
           +S + S VK+ ++KFDG +NF LWQ+QVKDVLIQ GLHKALK                  
Sbjct: 40  VSGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALK------------------ 99

Query: 61  ESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMY 120
                     K S I DEEW+ELDLR  SAIRL   KN+LANV G+  AKE+W+K E +Y
Sbjct: 100 ---------KKISGIKDEEWEELDLRAASAIRLCLAKNVLANVQGMKIAKELWDKLEGLY 139

Query: 121 QEKNISN 128
           Q K ISN
Sbjct: 160 QAKGISN 139

[Close]

BLAST of Tan0010243 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 5   MSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSG 64
           + L +  ++KFDG +NF LWQ+QVKD+LIQ GL+KALKG+ +   L +      P +SSG
Sbjct: 86  LGLKRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPAS--LSEGKEPDKPSDSSG 145

Query: 65  GSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAKEVWEKFETMYQEKN 124
                  KS +S+EEW+ELD+R  S IRL   KN+LANV   S+ KE+WEK E MYQ K+
Sbjct: 146 DKG----KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKS 202

Query: 125 ISN 128
           +SN
Sbjct: 206 LSN 202

The following BLAST results are available for this feature:

BLAST of Tan0010243 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.8e-11	32.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Tan0010243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.2e-40	72.44	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF7802225.1	2.2e-26	54.33	cytochrome p450 [Senna tora]	[more]
KAF3615230.1	2.8e-26	57.14	hypothetical protein FXO37_35592 [Capsicum annuum]	[more]
KAF5463231.1	1.1e-25	52.38	hypothetical protein F2P56_019161 [Juglans regia]	[more]
KAF3622233.1	1.8e-25	57.14	hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical pr...	[more]

BLAST of Tan0010243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	5.8e-41	72.44	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A2G2YJH4	1.3e-24	54.84	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1	[more]
A0A2G3AMB5	1.4e-23	53.33	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1	[more]
A0A444X3K2	4.1e-23	50.39	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1	[more]
A0A6A2YS90	2.1e-22	50.41	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]

BLAST of Tan0010243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..77
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..127
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010243.1	Tan0010243.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding