Tan0010234 (gene) Snake gourd v1

Overview
NameTan0010234
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMuDRA-like transposase
LocationLG06: 63812248 .. 63812870 (+)
RNA-Seq ExpressionTan0010234
SyntenyTan0010234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACAAGTGTGTTTTCGTTAGATTTGGCGGTGTATGGGAAGAGGATACATGTACTTATATCGGAGGTCAAATGACCCGTATTGTTGTGCCACTAACGATAACCTACGAAGAATTACGATCAGAGATTTATAGTATTACGTCTATAGACGAGCATTCATATGACGTTGAAATGAGAGTAAAATTCAATACAGACTATCCATCGCCACCAATGTACATAAAAAACAATCGAGATGTTGTATTTTTTTTAATCACTCGGACGTTGCAAGAGTCCAAATCTGGATAACAACTATACAGAGGCAACTCGTCACTGACGGTGGAGAAACTGATGACGACACAAGTGACGACCCGAAATACAACCCTTTACACGAAGTAGAAAGCGACGAAGAAGATGAAGATAAATACGCAGACGAAGATGAGGGAGAGAATCAGGTTGCAAGGTTTGGAGAAGATGTAGAAGAATACGAGGATGATGATGAATACGAGGATGAAGAAATGGTACAGGACGACGTGTACGAAACAGATACCCCTGGTCAATCGAAAGACGTAGAAGAATGCAGAGACGATGGATACGTTCCAAATGATGGTCTACATTTTGATAACGTACTGGAAACGGACTAG

mRNA sequence

ATGGAGAACAAGTGTGTTTTCGTTAGATTTGGCGGTGTATGGGAAGAGGATACATGTACTTATATCGGAGGTCAAATGACCCGTATTGTTGTGCCACTAACGATAACCTACGAAGAATTACGATCAGAGATTTATAGTATTACGTCTATAGACGAGCATTCATATGACGTTGAAATGAGAAGGCAACTCGTCACTGACGGTGGAGAAACTGATGACGACACAAGTGACGACCCGAAATACAACCCTTTACACGAAGTAGAAAGCGACGAAGAAGATGAAGATAAATACGCAGACGAAGATGAGGGAGAGAATCAGGTTGCAAGGTTTGGAGAAGATGTAGAAGAATACGAGGATGATGATGAATACGAGGATGAAGAAATGGTACAGGACGACGTGTACGAAACAGATACCCCTGGTCAATCGAAAGACGTAGAAGAATGCAGAGACGATGGATACGTTCCAAATGATGGTCTACATTTTGATAACGTACTGGAAACGGACTAG

Coding sequence (CDS)

ATGGAGAACAAGTGTGTTTTCGTTAGATTTGGCGGTGTATGGGAAGAGGATACATGTACTTATATCGGAGGTCAAATGACCCGTATTGTTGTGCCACTAACGATAACCTACGAAGAATTACGATCAGAGATTTATAGTATTACGTCTATAGACGAGCATTCATATGACGTTGAAATGAGAAGGCAACTCGTCACTGACGGTGGAGAAACTGATGACGACACAAGTGACGACCCGAAATACAACCCTTTACACGAAGTAGAAAGCGACGAAGAAGATGAAGATAAATACGCAGACGAAGATGAGGGAGAGAATCAGGTTGCAAGGTTTGGAGAAGATGTAGAAGAATACGAGGATGATGATGAATACGAGGATGAAGAAATGGTACAGGACGACGTGTACGAAACAGATACCCCTGGTCAATCGAAAGACGTAGAAGAATGCAGAGACGATGGATACGTTCCAAATGATGGTCTACATTTTGATAACGTACTGGAAACGGACTAG

Protein sequence

MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMRRQLVTDGGETDDDTSDDPKYNPLHEVESDEEDEDKYADEDEGENQVARFGEDVEEYEDDDEYEDEEMVQDDVYETDTPGQSKDVEECRDDGYVPNDGLHFDNVLETD
Homology
BLAST of Tan0010234 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-06
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1   MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 60
           M  KCV  R+G  W+E+   Y+GG++T IVVP+T+ Y+E ++ IY + +++   +DV MR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

BLAST of Tan0010234 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-06
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 1   MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 60
           M  KCV + + G W+E+   Y+GG++  IVVP+T+ YEEL++ IY I +I    +DV MR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

BLAST of Tan0010234 vs. NCBI nr
Match: TYK07864.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 6  VFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 61
          + VR GG W+E    Y GG +  IVVP  ITY++L+SE+Y +  +D   +D+++R
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIR 60

BLAST of Tan0010234 vs. NCBI nr
Match: KAA0056639.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 1  MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 60
          M N  + VR+GG W+E    Y GG +  IVV   IT+++L+ E+Y++T +D   +D+++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

BLAST of Tan0010234 vs. NCBI nr
Match: KAA0045464.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-04
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 6  VFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 61
          + VR GG W+E+   Y GG +  IVVP  IT+++L+SE+Y +  +D   +D+++R
Sbjct: 6  ILVRHGGAWDEERRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

BLAST of Tan0010234 vs. ExPASy TrEMBL
Match: A0A5D3C9E9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00080 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 6  VFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 61
          + VR GG W+E    Y GG +  IVVP  ITY++L+SE+Y +  +D   +D+++R
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIR 60

BLAST of Tan0010234 vs. ExPASy TrEMBL
Match: A0A5A7UT04 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001610 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 1  MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 60
          M N  + VR+GG W+E    Y GG +  IVV   IT+++L+ E+Y++T +D   +D+++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

BLAST of Tan0010234 vs. ExPASy TrEMBL
Match: A0A5A7TQS3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00270 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 6  VFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 61
          + VR GG W+E+   Y GG +  IVVP  IT+++L+SE+Y +  +D   +D+++R
Sbjct: 6  ILVRHGGAWDEERRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

BLAST of Tan0010234 vs. ExPASy TrEMBL
Match: A0A5A7U2Y3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00460 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 1  MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 60
          M +  + VR GG W+E    Y GG +  IVVP  IT+++L+SE+Y +  +D   +D+++R
Sbjct: 1  MAHVWILVRHGGAWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

BLAST of Tan0010234 vs. ExPASy TrEMBL
Match: A0A5D3CZS8 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00720 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 1  MENKCVFVRFGGVWEEDTCTYIGGQMTRIVVPLTITYEELRSEIYSITSIDEHSYDVEMR 60
          M +  + VR GG W+E    Y GG +  IVVP  IT+++L+SE+Y +  +D   +D+++R
Sbjct: 1  MAHVWILVRHGGAWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038888098.12.5e-0641.67uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_038902319.15.6e-0645.00trichohyalin-like [Benincasa hispida][more]
TYK07864.12.4e-0441.82MuDRA-like transposase [Cucumis melo var. makuwa][more]
KAA0056639.13.1e-0438.33MuDRA-like transposase [Cucumis melo var. makuwa][more]
KAA0045464.16.9e-0440.00MuDRA-like transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3C9E91.1e-0441.82MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7UT041.5e-0438.33MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5A7TQS33.3e-0440.00MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A5A7U2Y33.3e-0438.33MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A5D3CZS83.3e-0438.33MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010234.1Tan0010234.1mRNA