Tan0010206 (gene) Snake gourd v1

Overview


Name	Tan0010206
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	precursor of CEP14
Location	LG05: 76612754 .. 76613315 (+)
RNA-Seq Expression	Tan0010206
Synteny	Tan0010206

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTCCTTCTTCTCTCTCTGTTTTTCTCTCTCTCTCTTTCATGGCTGCCCCAATCAACAAATCTCTATTTCTCATCCTCTTCCTTCTTCTTCTTTCTTCCATTTCTCCATCTTCCCAATCCAGAACCACCCTTCTTCTTCACAACAACAACAACCTCTTCTTCGCCGCCCTCCCCAAAGGCCACGCGCCGCCGTCTTCTCCCAGCAAAAAAGGCCACGTCGTCCTCCTCCGTAGCCGCCGCCTCATCGCCGCCCCTCATCCCCGACATTATTATTACTACAACAACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGTCGGCCATTAACAATTTTCGCACCACACACAAACCCGATCATTATTATTTCATCTTCTTCTTTTTTTTCTCTTTTTAATTTGATTCATCAAGTTTTGGAGATTGGTTGTTACCTTGTGTATTATGAACTTATAATTAAAGTTAATGAATGTACATAAAAAGAGGAAAAATAGCACTTTCCTTTCCTTTTAGTTTTTGATCATCCCATGAATATTGGAAAAAGATGTGTTTGGTTCCTTCA

mRNA sequence

CATTTTCCTTCTTCTCTCTCTGTTTTTCTCTCTCTCTCTTTCATGGCTGCCCCAATCAACAAATCTCTATTTCTCATCCTCTTCCTTCTTCTTCTTTCTTCCATTTCTCCATCTTCCCAATCCAGAACCACCCTTCTTCTTCACAACAACAACAACCTCTTCTTCGCCGCCCTCCCCAAAGGCCACGCGCCGCCGTCTTCTCCCAGCAAAAAAGGCCACGTCGTCCTCCTCCGTAGCCGCCGCCTCATCGCCGCCCCTCATCCCCGACATTATTATTACTACAACAACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGTCGGCCATTAACAATTTTCGCACCACACACAAACCCGATCATTATTATTTCATCTTCTTCTTTTTTTTCTCTTTTTAATTTGATTCATCAAGTTTTGGAGATTGGTTGTTACCTTGTGTATTATGAACTTATAATTAAAGTTAATGAATGTACATAAAAAGAGGAAAAATAGCACTTTCCTTTCCTTTTAGTTTTTGATCATCCCATGAATATTGGAAAAAGATGTGTTTGGTTCCTTCA

Coding sequence (CDS)

ATGGCTGCCCCAATCAACAAATCTCTATTTCTCATCCTCTTCCTTCTTCTTCTTTCTTCCATTTCTCCATCTTCCCAATCCAGAACCACCCTTCTTCTTCACAACAACAACAACCTCTTCTTCGCCGCCCTCCCCAAAGGCCACGCGCCGCCGTCTTCTCCCAGCAAAAAAGGCCACGTCGTCCTCCTCCGTAGCCGCCGCCTCATCGCCGCCCCTCATCCCCGACATTATTATTACTACAACAACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGTCGGCCATTAA

Protein sequence

MAAPINKSLFLILFLLLLSSISPSSQSRTTLLLHNNNNLFFAALPKGHAPPSSPSKKGHVVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH

Homology

[Close]

BLAST of Tan0010206 vs. ExPASy Swiss-Prot
Match: Q9FZ54 (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 1  MAAPINKSLFLILFLLLLSSISPSSQSRTTLLLH-NNNNLFFAALPKGHAPPSSPSKKGH 60
          MA P      + L +L++  +  SSQ+R  L+ +  +  LF +ALPKG+ PPS PS KGH
Sbjct: 1  MARPRISISMICLLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGH 60

Query: 61 VVLL--RSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
                  +R++    P  Y      R L SVPSPGVGH
Sbjct: 61 TSPPDDTDQRMVPENSPEIY------RRLESVPSPGVGH 93

[Close]

BLAST of Tan0010206 vs. ExPASy Swiss-Prot
Match: Q52K95 (Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.3e-05
Identity = 41/118 (34.75%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 1   MAAPINKSLFL-ILFLLLLSSISPSSQSRTTLLLHNNNNL-----------------FFA 60
           MA  +  +++L I+F +++S++     SR  L +    NL                   +
Sbjct: 1   MAVRLIPTIWLFIVFAVIVSALPSLVSSRKLLEVKKQENLTVREEEKSHMPHVTKTSTLS 60

Query: 61  ALPKGHAPPSSPSKKGHVVL----LRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
           ALPKG  P S+PSKKGH  +    LRSR L              +R LRSVPSPGVGH
Sbjct: 61  ALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTV-----------DRYLRSVPSPGVGH 107

[Close]

BLAST of Tan0010206 vs. NCBI nr
Match: TXG47657.1 (hypothetical protein EZV62_026951 [Acer yangbiense])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 10 FLILFLLLLSSISPSSQSRTTLLLHNNNN----------LFFAALPKGHAPPSSPSKKGH 69
          F+++FL++ +S+SP  ++R   LL+NNNN          LF  ALPKG  P SSPSKK H
Sbjct: 8  FMLVFLVVFASVSPCMEARK--LLNNNNNNKKMGSSFASLFLNALPKGKVPASSPSKKTH 67

Query: 70 VVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
            L   +  +     RH    + +RILRSVPSPG+GH
Sbjct: 68 ATLDNEKLFV-----RH--LASIDRILRSVPSPGIGH 95

[Close]

BLAST of Tan0010206 vs. NCBI nr
Match: XP_027348625.1 (precursor of CEP14 [Abrus precatorius])

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1  MAAPINKSLFLILFLLLLSSISPSSQSRTTLL----------LHNNNNLFFAALPKGHAP 60
          MA P   S +++LF+LL +S+S S + R  LL            + ++LF +ALPKG  P
Sbjct: 1  MARP---STWVLLFILLFASLSSSLEGRKLLLGAEKQWKKANPSSRDSLFLSALPKGTVP 60

Query: 61 PSSPSKKGHVV----LLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
          PSSPSKKGHVV     L +R LI+           +  +LRSVPSPGVGH
Sbjct: 61 PSSPSKKGHVVEVDEKLTARHLISI----------DRVLLRSVPSPGVGH 97

[Close]

BLAST of Tan0010206 vs. NCBI nr
Match: OIT29134.1 (hypothetical protein A4A49_16180 [Nicotiana attenuata])

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-07
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 8  SLFLILFLLLLSSISPSSQSRTTLLLHN-------NNNLFFAALPKGHAPPSSPSKKGHV 67
          S  L++F+L+L+S S S+++R  L LH         + L+  ALPKG  P S+PSKKGH 
Sbjct: 8  SSILLMFILVLASFSSSTEARKLLKLHEVKKTPSLEDRLYLNALPKGRVPASTPSKKGHS 67

Query: 68 VLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
            +   +LIA    RH      +RILRSVPSPGVGH
Sbjct: 68 YTI-DEKLIA----RHLAAV--DRILRSVPSPGVGH 96

[Close]

BLAST of Tan0010206 vs. NCBI nr
Match: XP_015875435.1 (precursor of CEP14 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8  SLFLILFLLLLSSISPSSQSRTTLLLHNN--------NNLFFAALPKGHAPPSSPSKKGH 67
          SL LILF+++ +S + SS++R  L++ +         ++LF +ALPKG+ P SSPS KGH
Sbjct: 6  SLSLILFMVVFASSAWSSEARKLLVIKDEEKRAPSMVDSLFLSALPKGNVPSSSPSHKGH 65

Query: 68 VVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
           V++ + +LIA    RH    +  RIL+SVPSPG+GH
Sbjct: 66 AVVV-NEKLIA----RH--LISIERILQSVPSPGMGH 95

[Close]

BLAST of Tan0010206 vs. NCBI nr
Match: KYP36329.1 (hypothetical protein KK1_042550 [Cajanus cajan])

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 1  MAAPINKSLFLILFLLLLSSISPSSQSRTTLLLHNNN---------NLFFAALPKGHAPP 60
          MA PI     L+ F+L+ +S   S ++R  +L  + N         NLF +ALPKG  PP
Sbjct: 1  MARPIT---LLLPFMLIFASFFSSLEARNLVLEKHQNKVSPSSRRDNLFLSALPKGTVPP 60

Query: 61 SSPSKKGHVVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
          SSPSKKGH + +   +LIA    RH     +  +LRSVPSPGVGH
Sbjct: 61 SSPSKKGHAMEV-DEKLIA----RHLITM-DRVLLRSVPSPGVGH 96

[Close]

BLAST of Tan0010206 vs. ExPASy TrEMBL
Match: A0A5C7GT40 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026951 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.3e-08
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 10 FLILFLLLLSSISPSSQSRTTLLLHNNNN----------LFFAALPKGHAPPSSPSKKGH 69
          F+++FL++ +S+SP  ++R   LL+NNNN          LF  ALPKG  P SSPSKK H
Sbjct: 8  FMLVFLVVFASVSPCMEARK--LLNNNNNNKKMGSSFASLFLNALPKGKVPASSPSKKTH 67

Query: 70 VVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
            L   +  +     RH    + +RILRSVPSPG+GH
Sbjct: 68 ATLDNEKLFV-----RH--LASIDRILRSVPSPGIGH 95

[Close]

BLAST of Tan0010206 vs. ExPASy TrEMBL
Match: A0A314KK12 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_16180 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 8  SLFLILFLLLLSSISPSSQSRTTLLLHN-------NNNLFFAALPKGHAPPSSPSKKGHV 67
          S  L++F+L+L+S S S+++R  L LH         + L+  ALPKG  P S+PSKKGH 
Sbjct: 8  SSILLMFILVLASFSSSTEARKLLKLHEVKKTPSLEDRLYLNALPKGRVPASTPSKKGHS 67

Query: 68 VLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
            +   +LIA    RH      +RILRSVPSPGVGH
Sbjct: 68 YTI-DEKLIA----RHLAAV--DRILRSVPSPGVGH 96

[Close]

BLAST of Tan0010206 vs. ExPASy TrEMBL
Match: A0A6P3ZC36 (precursor of CEP14 OS=Ziziphus jujuba OX=326968 GN=LOC107412223 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.4e-07
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8  SLFLILFLLLLSSISPSSQSRTTLLLHNN--------NNLFFAALPKGHAPPSSPSKKGH 67
          SL LILF+++ +S + SS++R  L++ +         ++LF +ALPKG+ P SSPS KGH
Sbjct: 6  SLSLILFMVVFASSAWSSEARKLLVIKDEEKRAPSMVDSLFLSALPKGNVPSSSPSHKGH 65

Query: 68 VVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
           V++ + +LIA    RH    +  RIL+SVPSPG+GH
Sbjct: 66 AVVV-NEKLIA----RH--LISIERILQSVPSPGMGH 95

[Close]

BLAST of Tan0010206 vs. ExPASy TrEMBL
Match: A0A151R1E1 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_042550 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 1  MAAPINKSLFLILFLLLLSSISPSSQSRTTLLLHNNN---------NLFFAALPKGHAPP 60
          MA PI     L+ F+L+ +S   S ++R  +L  + N         NLF +ALPKG  PP
Sbjct: 1  MARPIT---LLLPFMLIFASFFSSLEARNLVLEKHQNKVSPSSRRDNLFLSALPKGTVPP 60

Query: 61 SSPSKKGHVVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
          SSPSKKGH + +   +LIA    RH     +  +LRSVPSPGVGH
Sbjct: 61 SSPSKKGHAMEV-DEKLIA----RHLITM-DRVLLRSVPSPGVGH 96

[Close]

BLAST of Tan0010206 vs. ExPASy TrEMBL
Match: A0A438HH69 (Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 6  NKSLFLILFLLLLSSISPSSQSRTTLLL----HNNN-------NLFFAALPKGHAPPSSP 65
          +K+L LILF ++ SS  PS  +R  L +    HN         +L  AALPKG  P SSP
Sbjct: 4  HKALLLILF-VVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSP 63

Query: 66 SKKGHVVLLRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
          SKKGH +++   +LIA    RH      +RILRSVPSPGVGH
Sbjct: 64 SKKGHAMVV-DEKLIA----RHLAVV--DRILRSVPSPGVGH 97

[Close]

BLAST of Tan0010206 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 1  MAAPINKSLFLILFLLLLSSISPSSQSRTTLLLH-NNNNLFFAALPKGHAPPSSPSKKGH 60
          MA P      + L +L++  +  SSQ+R  L+ +  +  LF +ALPKG+ PPS PS KGH
Sbjct: 1  MARPRISISMICLLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGH 60

Query: 61 VVLL--RSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
                  +R++    P  Y      R L SVPSPGVGH
Sbjct: 61 TSPPDDTDQRMVPENSPEIY------RRLESVPSPGVGH 93

[Close]

BLAST of Tan0010206 vs. TAIR 10
Match: AT1G29290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 41/118 (34.75%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 1   MAAPINKSLFL-ILFLLLLSSISPSSQSRTTLLLHNNNNL-----------------FFA 60
           MA  +  +++L I+F +++S++     SR  L +    NL                   +
Sbjct: 1   MAVRLIPTIWLFIVFAVIVSALPSLVSSRKLLEVKKQENLTVREEEKSHMPHVTKTSTLS 60

Query: 61  ALPKGHAPPSSPSKKGHVVL----LRSRRLIAAPHPRHYYYYNNNRILRSVPSPGVGH 97
           ALPKG  P S+PSKKGH  +    LRSR L              +R LRSVPSPGVGH
Sbjct: 61  ALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTV-----------DRYLRSVPSPGVGH 107

The following BLAST results are available for this feature:

BLAST of Tan0010206 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ54	1.8e-07	39.39	Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1	[more]
Q52K95	6.3e-05	34.75	Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1	[more]

BLAST of Tan0010206 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG47657.1	1.7e-07	44.33	hypothetical protein EZV62_026951 [Acer yangbiense]	[more]
XP_027348625.1	2.2e-07	43.64	precursor of CEP14 [Abrus precatorius]	[more]
OIT29134.1	5.0e-07	45.83	hypothetical protein A4A49_16180 [Nicotiana attenuata]	[more]
XP_015875435.1	1.1e-06	44.33	precursor of CEP14 [Ziziphus jujuba]	[more]
KYP36329.1	4.2e-06	43.81	hypothetical protein KK1_042550 [Cajanus cajan]	[more]

BLAST of Tan0010206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GT40	8.3e-08	44.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026951 PE=4 SV=1	[more]
A0A314KK12	2.4e-07	45.83	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_16180 PE=4 SV=1	[more]
A0A6P3ZC36	5.4e-07	44.33	precursor of CEP14 OS=Ziziphus jujuba OX=326968 GN=LOC107412223 PE=4 SV=1	[more]
A0A151R1E1	2.0e-06	43.81	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_042550 PE=4 SV=1	[more]
A0A438HH69	3.5e-06	47.06	Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1	[more]

BLAST of Tan0010206 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16950.1	1.3e-08	39.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G29290.1	4.5e-06	34.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038930	Precursor of CEP13/CEP14	PANTHER	PTHR37180	PRECURSOR OF CEP14	coord: 8..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010206.1	Tan0010206.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006970	response to osmotic stress