Tan0010101 (gene) Snake gourd v1

Overview


Name	Tan0010101
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Pathogen induced 4 protein
Location	LG06: 76598096 .. 76598737 (+)
RNA-Seq Expression	Tan0010101
Synteny	Tan0010101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGAAACCCAAAGAAAAGAGAAAAAAAAAAAAATGTCTCCAAAATTTTTGCTTATTCTTCTTCTTGGAGTGATTCTTCTTACCTCTCAAGCTCTTGCTCGATCTTATTTCTCGCCGGAGACCCACCTGAAAGTGTCTCCCTCCGCCACCGACTCATCGGCGGTCGGTGAGACTTTGAGGATCAAAATAAAATTCCCATGGAAGAAAAAATTACCAAGACCCGATCTCCCACCCATTACCGTGCCGTCGCCACCGCCACGGCGCCACCACAAGCCGAAGCCACCCACCTCCAACTGAATGCCAATGGAGACCTAAGTTGAAGTCATTTATAGGTGTTTAATAAATATGCATCATCACCAAAACTGCGGTGTGTGATTTCAAATTTGTTTTTTTTTTTCTACGAGTGTTCGGACCAGCTTGACACACTTGCACATTAACGAGACAAACACATGATAAGTTTAAGATGGATGGTTATTCCAATTTACTTTTTATATAATATGTTATTATTGTTGCAATCTAAATACAACAAGTTTCAATTTGAATTTCTTATCTCAAAGAAAAAGGTTAAATATATTGCTTATTTGAATAATATATAAGTTTGAACGCATATGATTACATTTTTTAATTATATGTTGTCTTTAA

mRNA sequence

AGTGAAACCCAAAGAAAAGAGAAAAAAAAAAAAATGTCTCCAAAATTTTTGCTTATTCTTCTTCTTGGAGTGATTCTTCTTACCTCTCAAGCTCTTGCTCGATCTTATTTCTCGCCGGAGACCCACCTGAAAGTGTCTCCCTCCGCCACCGACTCATCGGCGGTCGGTGAGACTTTGAGGATCAAAATAAAATTCCCATGGAAGAAAAAATTACCAAGACCCGATCTCCCACCCATTACCGTGCCGTCGCCACCGCCACGGCGCCACCACAAGCCGAAGCCACCCACCTCCAACTGAATGCCAATGGAGACCTAAGTTGAAGTCATTTATAGGTGTTTAATAAATATGCATCATCACCAAAACTGCGGTGTGTGATTTCAAATTTGTTTTTTTTTTTCTACGAGTGTTCGGACCAGCTTGACACACTTGCACATTAACGAGACAAACACATGATAAGTTTAAGATGGATGGTTATTCCAATTTACTTTTTATATAATATGTTATTATTGTTGCAATCTAAATACAACAAGTTTCAATTTGAATTTCTTATCTCAAAGAAAAAGGTTAAATATATTGCTTATTTGAATAATATATAAGTTTGAACGCATATGATTACATTTTTTAATTATATGTTGTCTTTAA

Coding sequence (CDS)

ATGTCTCCAAAATTTTTGCTTATTCTTCTTCTTGGAGTGATTCTTCTTACCTCTCAAGCTCTTGCTCGATCTTATTTCTCGCCGGAGACCCACCTGAAAGTGTCTCCCTCCGCCACCGACTCATCGGCGGTCGGTGAGACTTTGAGGATCAAAATAAAATTCCCATGGAAGAAAAAATTACCAAGACCCGATCTCCCACCCATTACCGTGCCGTCGCCACCGCCACGGCGCCACCACAAGCCGAAGCCACCCACCTCCAACTGA

Protein sequence

MSPKFLLILLLGVILLTSQALARSYFSPETHLKVSPSATDSSAVGETLRIKIKFPWKKKLPRPDLPPITVPSPPPRRHHKPKPPTSN

Homology

[Close]

BLAST of Tan0010101 vs. NCBI nr
Match: XP_016902583.1 (PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MSPKFLLILLLGVILLTS-QALARSYFSPETHLKVSPSATDSSAVGETLRIKIKFPW-KK 60
          MS K L+ILLLGVILL+S Q +AR+Y+ PE H +++PSAT  SAVG++L  K+  PW KK
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLP-KLP-PWLKK 60

Query: 61 KLP-RPDLPPITVPSPPPRR 78
            P +P LP I  P PPPR+
Sbjct: 61 NFPKKPRLPKIKSP-PPPRQ 77

[Close]

BLAST of Tan0010101 vs. NCBI nr
Match: ABF19725.1 (pathogen induced 4 protein [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-05
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1  MSPKFLLILLLGVILLTSQALARSYFSPETHLKVSPSATDSSAVGETLRIKIKFPWKKKL 60
          MS K L+ILLLGVILL++Q +AR Y+  E H +++PSAT  SAVGE+L+ K+  PW KK+
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQ-KLP-PWLKKI 60

Query: 61 PRPDLPPITV-----PSPPPRRHHKPKPPTSN 88
            P  PP +         PPRR  + KPP+SN
Sbjct: 61 -FPKKPPKSTCHLHRRRDPPRR--RLKPPSSN 87

[Close]

BLAST of Tan0010101 vs. ExPASy TrEMBL
Match: A0A1S4E2Y7 (uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MSPKFLLILLLGVILLTS-QALARSYFSPETHLKVSPSATDSSAVGETLRIKIKFPW-KK 60
          MS K L+ILLLGVILL+S Q +AR+Y+ PE H +++PSAT  SAVG++L  K+  PW KK
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLP-KLP-PWLKK 60

Query: 61 KLP-RPDLPPITVPSPPPRR 78
            P +P LP I  P PPPR+
Sbjct: 61 NFPKKPRLPKIKSP-PPPRQ 77

[Close]

BLAST of Tan0010101 vs. ExPASy TrEMBL
Match: A0MCW3 (Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-05
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1  MSPKFLLILLLGVILLTSQALARSYFSPETHLKVSPSATDSSAVGETLRIKIKFPWKKKL 60
          MS K L+ILLLGVILL++Q +AR Y+  E H +++PSAT  SAVGE+L+ K+  PW KK+
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQ-KLP-PWLKKI 60

Query: 61 PRPDLPPITV-----PSPPPRRHHKPKPPTSN 88
            P  PP +         PPRR  + KPP+SN
Sbjct: 61 -FPKKPPKSTCHLHRRRDPPRR--RLKPPSSN 87

The following BLAST results are available for this feature:

BLAST of Tan0010101 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010101 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902583.1	4.2e-05	56.25	PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo]	[more]
ABF19725.1	9.4e-05	50.00	pathogen induced 4 protein [Cucumis sativus]	[more]

BLAST of Tan0010101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E2Y7	2.0e-05	56.25	uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=...	[more]
A0MCW3	4.6e-05	50.00	Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1	[more]

BLAST of Tan0010101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010101.1	Tan0010101.1	mRNA