Tan0010017 (gene) Snake gourd v1

Overview


Name	Tan0010017
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG07: 31693818 .. 31694726 (+)
RNA-Seq Expression	Tan0010017
Synteny	Tan0010017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCGAAACTCAAGAAGCTACTGGTGATAGAGGAAGAAAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAACATGGAGGAACAAATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGGGTTGTATCAGCACAAGCAAATCCAGAAAAAAAGTATGGCACTGAAAGACTGAAGGCCTTAGGTGCAACATCATTTGAAGCCACGACAGATCCCGCTGATATTGAGGGTTCGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCTTGAAGACAGGAAGGTCGATTTAGCAGCATTCTTACTCCAGAAAGGAGCAGATGATTGGTGGAAGATAATAGAGAACATAAAAGAGGAAGCTTGGAGTTGGAAAGATTTTCGAAAGGCCTTTGAAGATAAGTACTATTCGAGCTCTTGTCGTGATGCAAAGAGGAACGAGTTTCTAGGACTTGTTCAGGGATCGATGAGAGTAACAGAATATGAGAAGAAGTTCACAGAGTTATCAAATTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTGCGAACAGAGATCCGAACGCTTGTGACAACAAGTTCGGAGTGGGTTGAGTTCTCGAAGCTTGTGGAGACGACATTATGGGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTTTGTTGATTTACCCCGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTCTCTGGAAAAGGAAGCTTTAAACCCCATCGTGGTAGGCAAACTACTCCAAGGACTGGTACAGGTGGACGTGAGGAAAGACAGAGGTAG

mRNA sequence

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCGAAACTCAAGAAGCTACTGGTGATAGAGGAAGAAAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAACATGGAGGAACAAATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGGGTTGTATCAGCACAAGCAAATCCAGAAAAAAAGTATGGCACTGAAAGACTGAAGGCCTTAGGTGCAACATCATTTGAAGCCACGACAGATCCCGCTGATATTGAGGCAGATGATTGGTGGAAGATAATAGAGAACATAAAAGAGGAAGCTTGGAGTTGGAAAGATTTTCGAAAGGCCTTTGAAGATAAGTACTATTCGAGCTCTTGTCGTGATGCAAAGAGGAACGAGTTTCTAGGACTTGTTCAGGGATCGATGAGAGTAACAGAATATGAGAAGAAGTTCACAGAGTTATCAAATTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTGCGAACAGAGATCCGAACGCTTGTGACAACAAGTTCGGAGTGGGTTGAGTTCTCGAAGCTTGTGGAGACGACATTATGGGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTTTGTTGATTTACCCCGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTCTCTGGAAAAGGAAGCTTTAAACCCCATCGTGGTAGGCAAACTACTCCAAGGACTGGTACAGGTGGACGTGAGGAAAGACAGAGGTAG

Coding sequence (CDS)

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCGAAACTCAAGAAGCTACTGGTGATAGAGGAAGAAAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAACATGGAGGAACAAATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGGGTTGTATCAGCACAAGCAAATCCAGAAAAAAAGTATGGCACTGAAAGACTGAAGGCCTTAGGTGCAACATCATTTGAAGCCACGACAGATCCCGCTGATATTGAGGCAGATGATTGGTGGAAGATAATAGAGAACATAAAAGAGGAAGCTTGGAGTTGGAAAGATTTTCGAAAGGCCTTTGAAGATAAGTACTATTCGAGCTCTTGTCGTGATGCAAAGAGGAACGAGTTTCTAGGACTTGTTCAGGGATCGATGAGAGTAACAGAATATGAGAAGAAGTTCACAGAGTTATCAAATTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTGCGAACAGAGATCCGAACGCTTGTGACAACAAGTTCGGAGTGGGTTGAGTTCTCGAAGCTTGTGGAGACGACATTATGGGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTTTGTTGATTTACCCCGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTCTCTGGAAAAGGAAGCTTTAAACCCCATCGTGGTAGGCAAACTACTCCAAGGACTGGTACAGGTGGACGTGAGGAAAGACAGAGGTAG

Protein sequence

MARGGKRGRQVEAETQEATGDRGRKVSEGESSHPQQEVNMEEQIFTRITQRLAERVVSAQANPEKKYGTERLKALGATSFEATTDPADIEADDWWKIIENIKEEAWSWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTEYEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERSLVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTGGREERQR

Homology

[Close]

BLAST of Tan0010017 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 3.9e-49
Identity = 126/300 (42.00%), Postives = 175/300 (58.33%), Query Frame = 0


Query: 5   GKRGRQVEAETQEATGD--RGRKVSEGESSHPQQEVNMEEQIFTRITQRLAERVVSAQAN 64
           GK  +  +AE   A  +   G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ++
Sbjct: 4   GKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSD 63

Query: 65  PEKKYGTERLKALGATSFEATTDPADIE-------------------------------A 124
           PEKKYG ERLKALGAT+F  TT+P D+E                               A
Sbjct: 64  PEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDA 123

Query: 125 DDWWKIIENIKEEA--WSWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTEYEKKF 184
           +DWW++ E+ +      SW +F+KAF DK+Y  S RDAK NEF+ L QG+M V EYEKK+
Sbjct: 124 EDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYEKKY 183

Query: 185 TELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERSLVDDR 244
           TELS YA+ ++ +E +RCKRFE+GLR EIRT VT  ++W +FSKLVE  L VE+SL ++R
Sbjct: 184 TELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSL-NER 243

Query: 245 MGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTGGREER 270
             +        T+   + R+R  +  + RF P VS +GSFK      +  ++ +GG  +R
Sbjct: 244 KREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQR 302

[Close]

BLAST of Tan0010017 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-44
Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 0


Query: 58  SAQANPEKKYGTERLKALGATSFEATTDPADIE--------------------------- 117
           S Q++PEKKYG ERLKALGAT+F  TT+PAD E                           
Sbjct: 47  STQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFL 106

Query: 118 ----ADDWWKIIENIKEEAW--SWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTE 177
               A+DWW++ E+ +      SW +F+KAF DK+Y  S RDAKRNEFL L QGSM + E
Sbjct: 107 LQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTIAE 166

Query: 178 YEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERS 237
           YEKK+TELS YA+ ++ +E++RCKRFE+GLR EIRT VT  ++W +FSKLVE  L VE+S
Sbjct: 167 YEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAALRVEKS 226

Query: 238 LVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTG 270
           L ++R  +        T+   + R+R  +  + RF PGVS +G+FK      +  ++G+ 
Sbjct: 227 L-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSS 286

[Close]

BLAST of Tan0010017 vs. NCBI nr
Match: TYK15233.1 (uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 9.3e-43
Identity = 106/245 (43.27%), Postives = 145/245 (59.18%), Query Frame = 0


Query: 58  SAQANPEKKYGTERLKALGATSFEATTDPADIE--------------------------- 117
           SAQ++P+KKYG ERLKALGAT+F  TT+P D+E                           
Sbjct: 177 SAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAFL 236

Query: 118 ----ADDWWKIIENIKEEAW--SWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTE 177
               A+DWW++ E+ +      SW +F+KAF DK+Y  S RDAKRNEFL L QGSM V E
Sbjct: 237 LQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTVAE 296

Query: 178 YEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERS 237
           YEKK+TELS YA+ ++ +E++R KRFE+GLR EIRT VT  ++W +FSKLVE  L V +S
Sbjct: 297 YEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRVGKS 356

Query: 238 LVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTG 270
           L ++R  +        T+   + R+R  +  + RF PGV  +G+FK          +G+G
Sbjct: 357 L-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFSNSGSG 416

[Close]

BLAST of Tan0010017 vs. NCBI nr
Match: KAA0039476.1 (uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 9.3e-43
Identity = 106/245 (43.27%), Postives = 145/245 (59.18%), Query Frame = 0


Query: 58  SAQANPEKKYGTERLKALGATSFEATTDPADIE--------------------------- 117
           SAQ++P+KKYG ERLKALGAT+F  TT+P D+E                           
Sbjct: 141 SAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAFL 200

Query: 118 ----ADDWWKIIENIKEEAW--SWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTE 177
               A+DWW++ E+ +      SW +F+KAF DK+Y  S RDAKRNEFL L QGSM V E
Sbjct: 201 LQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTVAE 260

Query: 178 YEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERS 237
           YEKK+TELS YA+ ++ +E++R KRFE+GLR EIRT VT  ++W +FSKLVE  L V +S
Sbjct: 261 YEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRVGKS 320

Query: 238 LVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTG 270
           L ++R  +        T+   + R+R  +  + RF PGV  +G+FK          +G+G
Sbjct: 321 L-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFSNSGSG 380

[Close]

BLAST of Tan0010017 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-41
Identity = 104/218 (47.71%), Postives = 131/218 (60.09%), Query Frame = 0


Query: 26  VSEGESSHPQQEV--NMEEQIFTRITQRLAERVVSAQANPEKKYGTERLKALGATSFEAT 85
           +SEGESS PQ      +E+ +F RI QRLA  V   +AN EKKY  ER KALGA +FE T
Sbjct: 1   MSEGESSTPQARAYFQLEDVVFYRIVQRLAASVGLVRANLEKKYDIERFKALGAVTFEGT 60

Query: 86  TDPADI-------------------------------EADDWWKII--ENIKEEAWSWKD 145
           TDP +                                EA+ WWK+I       +A  W +
Sbjct: 61  TDPTEAELWLDVVEKCFNVMSCPEDRKVGLATFLLQKEAEKWWKVISVRRASTDAMLWPE 120

Query: 146 FRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTEYEKKFTELSNYASTIVANEIDRCKRF 205
           F+KA +DKY  SS RDAKR+EFL L QG+M V EYE+KFTELS YA  I+A E DRC++F
Sbjct: 121 FKKAIKDKYCPSSFRDAKRDEFLRLTQGTMSVVEYEQKFTELSQYALPIIAEEKDRCRKF 180

Query: 206 EDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERSLVDD 209
           E GLR EI+T VT+++ W++F++LVE    VERSL DD
Sbjct: 181 EQGLRKEIKTPVTSTANWLDFNQLVERATRVERSLADD 218

[Close]

BLAST of Tan0010017 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 126/300 (42.00%), Postives = 175/300 (58.33%), Query Frame = 0


Query: 5   GKRGRQVEAETQEATGD--RGRKVSEGESSHPQQEVNMEEQIFTRITQRLAERVVSAQAN 64
           GK  +  +AE   A  +   G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ++
Sbjct: 4   GKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSD 63

Query: 65  PEKKYGTERLKALGATSFEATTDPADIE-------------------------------A 124
           PEKKYG ERLKALGAT+F  TT+P D+E                               A
Sbjct: 64  PEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDA 123

Query: 125 DDWWKIIENIKEEA--WSWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTEYEKKF 184
           +DWW++ E+ +      SW +F+KAF DK+Y  S RDAK NEF+ L QG+M V EYEKK+
Sbjct: 124 EDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYEKKY 183

Query: 185 TELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERSLVDDR 244
           TELS YA+ ++ +E +RCKRFE+GLR EIRT VT  ++W +FSKLVE  L VE+SL ++R
Sbjct: 184 TELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSL-NER 243

Query: 245 MGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTGGREER 270
             +        T+   + R+R  +  + RF P VS +GSFK      +  ++ +GG  +R
Sbjct: 244 KREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQR 302

[Close]

BLAST of Tan0010017 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-44
Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 0


Query: 58  SAQANPEKKYGTERLKALGATSFEATTDPADIE--------------------------- 117
           S Q++PEKKYG ERLKALGAT+F  TT+PAD E                           
Sbjct: 47  STQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFL 106

Query: 118 ----ADDWWKIIENIKEEAW--SWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTE 177
               A+DWW++ E+ +      SW +F+KAF DK+Y  S RDAKRNEFL L QGSM + E
Sbjct: 107 LQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTIAE 166

Query: 178 YEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERS 237
           YEKK+TELS YA+ ++ +E++RCKRFE+GLR EIRT VT  ++W +FSKLVE  L VE+S
Sbjct: 167 YEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAALRVEKS 226

Query: 238 LVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTG 270
           L ++R  +        T+   + R+R  +  + RF PGVS +G+FK      +  ++G+ 
Sbjct: 227 L-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSS 286

[Close]

BLAST of Tan0010017 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 106/245 (43.27%), Postives = 145/245 (59.18%), Query Frame = 0


Query: 58  SAQANPEKKYGTERLKALGATSFEATTDPADIE--------------------------- 117
           SAQ++P+KKYG ERLKALGAT+F  TT+P D+E                           
Sbjct: 141 SAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAFL 200

Query: 118 ----ADDWWKIIENIKEEAW--SWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTE 177
               A+DWW++ E+ +      SW +F+KAF DK+Y  S RDAKRNEFL L QGSM V E
Sbjct: 201 LQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTVAE 260

Query: 178 YEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERS 237
           YEKK+TELS YA+ ++ +E++R KRFE+GLR EIRT VT  ++W +FSKLVE  L V +S
Sbjct: 261 YEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRVGKS 320

Query: 238 LVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTG 270
           L ++R  +        T+   + R+R  +  + RF PGV  +G+FK          +G+G
Sbjct: 321 L-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFSNSGSG 380

[Close]

BLAST of Tan0010017 vs. ExPASy TrEMBL
Match: A0A5D3CTK6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00030 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 106/245 (43.27%), Postives = 145/245 (59.18%), Query Frame = 0


Query: 58  SAQANPEKKYGTERLKALGATSFEATTDPADIE--------------------------- 117
           SAQ++P+KKYG ERLKALGAT+F  TT+P D+E                           
Sbjct: 177 SAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAFL 236

Query: 118 ----ADDWWKIIENIKEEAW--SWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTE 177
               A+DWW++ E+ +      SW +F+KAF DK+Y  S RDAKRNEFL L QGSM V E
Sbjct: 237 LQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTVAE 296

Query: 178 YEKKFTELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERS 237
           YEKK+TELS YA+ ++ +E++R KRFE+GLR EIRT VT  ++W +FSKLVE  L V +S
Sbjct: 297 YEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRVGKS 356

Query: 238 LVDDRMGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGRQTTPRTGTG 270
           L ++R  +        T+   + R+R  +  + RF PGV  +G+FK          +G+G
Sbjct: 357 L-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFSNSGSG 416

[Close]

BLAST of Tan0010017 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 124/303 (40.92%), Postives = 159/303 (52.48%), Query Frame = 0


Query: 3   RGGKRGRQVEAETQEATGDRGRKVSEGESSHPQQEVNMEEQIFTRITQRLAERVVSAQAN 62
           R G+R RQ +   Q  T    +  S GESS          + FTR TQ +     +  +N
Sbjct: 42  RTGRRRRQNQDGMQGPT----QGPSLGESSTLGVRGGAGNEQFTRTTQEIGRPDRAEPSN 101

Query: 63  PEKKYGTERLKALGATSFEATTDPADI-------------------------------EA 122
           P+K YG ERLK LGAT FE +TDP D                                EA
Sbjct: 102 PKKAYGIERLKKLGATVFEGSTDPVDAENWLNMLEKCFDVMNCPEEQKVRLATFLLQKEA 161

Query: 123 DDWWKIIENIKEE--AWSWKDFRKAFEDKYYSSSCRDAKRNEFLGLVQGSMRVTEYEKKF 182
           + WWK I   + +  A  W+ FR  FEDKYY S+  +AKR+EFLGL QGS+ V EYEKK+
Sbjct: 162 EGWWKSILTRRSDARALDWQTFRVIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYEKKY 221

Query: 183 TELSNYASTIVANEIDRCKRFEDGLRTEIRTLVTTSSEWVEFSKLVETTLWVERSLVDDR 242
           TELS YA  IVA+E DRC+RFE GLR EIRT VT  ++W  FS+LVET L VE+S+ +++
Sbjct: 222 TELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEK 281

Query: 243 MGKGAVGGGHTTYFVDLPRDRFQRGDNRRFTPG--VSGKGSFKPHRGRQTTPRTGTGGRE 271
                  G  TT       + F+  + RRFTPG  +S +  FK   G Q +     G   
Sbjct: 282 SAVELSRGTSTT-------NGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVF 333

The following BLAST results are available for this feature:

BLAST of Tan0010017 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010017 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95881.1	3.9e-49	42.00	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0060484.1	2.2e-44	44.08	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
TYK15233.1	9.3e-43	43.27	uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]	[more]
KAA0039476.1	9.3e-43	43.27	uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]	[more]
XP_038890030.1	2.3e-41	47.71	uncharacterized protein LOC120079741 [Benincasa hispida]	[more]

BLAST of Tan0010017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BB91	1.9e-49	42.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UZM6	1.1e-44	44.08	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TBS0	4.5e-43	43.27	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3CTK6	4.5e-43	43.27	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7SX06	2.7e-40	40.92	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0010017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 91..175 e-value: 2.3E-13 score: 50.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 90..242
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 90..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010017.1	Tan0010017.1	mRNA