Tan0010001 (gene) Snake gourd v1

Overview


Name	Tan0010001
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 2885361 .. 2886102 (+)
RNA-Seq Expression	Tan0010001
Synteny	Tan0010001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATCCCTACTTTTCTGCTTCTCTCATGGCGACCAATCTTCCCGTTTTTCATCCCGCTCCGATCAGAGCTTCTTCTTCTGGAAAATCCGAACCTAATCGCCGGAAGGCCGCCGCGCCGAAGTGGTGGTCCCCGATCTTCGGCTGGTCCTCCGAACCTGACTACGTCGTTTCTTCCGCCACGGATCAGCCGGTTCAGAATGCCGATCCGGAGCTCGACGGCGGACGAGCGAAATCCAGATTCACGCCTGGCTGCTTCACGGAGGAGAAGGCGAAACTGCTCCGGATGAAGACGCTAGAGAGCTCTACGTTTCATGACATTATGTACCATTCGGCAATCGCGTCTCGTCTCGCCTCCGATTTGTCGGATCGAAGCAAGAAATAGATCTACGAAGCTTGGCGCAGTGAGGTATTGTATTGTGTTTTTGGAAATCCGTATCTGTACTGCCTTTCTTTGTAAATCGTCGTAACAAAAAATTTGGGGGAAGGATCTGAATCTTCCTTCCCCAATAAACTTACCTCTTACTTTTGCCTATTAGTTCGTGTAGATTGCTAAAACTTTAAACCTACTGCAACTATTTTGCTTCTGATTACTGATTGACGACGATTGTTTTGGCATTATGATCACAGTCTATTTGAATCGGTTCTAGATGAATATCTTGATGTTGACGGCCTTGAAATCTACGCCGGCCGTTGTTAATTTGTTAAACAATAAAAATGATCATCATATGCGTTGCCCTTGCC

mRNA sequence

CTAATCCCTACTTTTCTGCTTCTCTCATGGCGACCAATCTTCCCGTTTTTCATCCCGCTCCGATCAGAGCTTCTTCTTCTGGAAAATCCGAACCTAATCGCCGGAAGGCCGCCGCGCCGAAGTGGTGGTCCCCGATCTTCGGCTGGTCCTCCGAACCTGACTACGTCGTTTCTTCCGCCACGGATCAGCCGGTTCAGAATGCCGATCCGGAGCTCGACGGCGGACGAGCGAAATCCAGATTCACGCCTGGCTGCTTCACGGAGGAGAAGGCGAAACTGCTCCGGATGAAGACGCTAGAGAGCTCTACGTTTCATGACATTATGTACCATTCGGCAATCGCGTCTCGTCTCGCCTCCGATTTGTCGGATCGAAGCAAGAAATAGATCTACGAAGCTTGGCGCAGTGAGGTATTGTATTGTGTTTTTGGAAATCCGTATCTGTACTGCCTTTCTTTGTAAATCGTCGTAACAAAAAATTTGGGGGAAGGATCTGAATCTTCCTTCCCCAATAAACTTACCTCTTACTTTTGCCTATTAGTTCGTGTAGATTGCTAAAACTTTAAACCTACTGCAACTATTTTGCTTCTGATTACTGATTGACGACGATTGTTTTGGCATTATGATCACAGTCTATTTGAATCGGTTCTAGATGAATATCTTGATGTTGACGGCCTTGAAATCTACGCCGGCCGTTGTTAATTTGTTAAACAATAAAAATGATCATCATATGCGTTGCCCTTGCC

Coding sequence (CDS)

ATGGCGACCAATCTTCCCGTTTTTCATCCCGCTCCGATCAGAGCTTCTTCTTCTGGAAAATCCGAACCTAATCGCCGGAAGGCCGCCGCGCCGAAGTGGTGGTCCCCGATCTTCGGCTGGTCCTCCGAACCTGACTACGTCGTTTCTTCCGCCACGGATCAGCCGGTTCAGAATGCCGATCCGGAGCTCGACGGCGGACGAGCGAAATCCAGATTCACGCCTGGCTGCTTCACGGAGGAGAAGGCGAAACTGCTCCGGATGAAGACGCTAGAGAGCTCTACGTTTCATGACATTATGTACCATTCGGCAATCGCGTCTCGTCTCGCCTCCGATTTGTCGGATCGAAGCAAGAAATAG

Protein sequence

MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNADPELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK

Homology

[Close]

BLAST of Tan0010001 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima])

HSP 1 Score: 227.3 bits (578), Expect = 7.1e-56
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSA DQPVQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 119
           PELDGGRAKS+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of Tan0010001 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSA DQPVQNAD
Sbjct: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 119
           PELDGGR KS+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of Tan0010001 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-54
Identity = 109/118 (92.37%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSA DQ VQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60

Query: 61  PELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 119
           PELDGGR KS+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of Tan0010001 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 4.3e-53
Identity = 106/118 (89.83%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNAD 60
           MATNL VFHPAPIRASSSGKSEPNRRKA APKWWSPIFGWSSEPDYV+SSA +Q V NA+
Sbjct: 1   MATNLAVFHPAPIRASSSGKSEPNRRKATAPKWWSPIFGWSSEPDYVLSSAAEQSVLNAE 60

Query: 61  PELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 119
           PEL+GGR +SRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 61  PELEGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 118

[Close]

BLAST of Tan0010001 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-49
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATD-QPV 60
           MATN  VFHP PIRAS   SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSA + Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 119
           QNADPELDGGR  SRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of Tan0010001 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSA DQPVQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 119
           PELDGGRAKS+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of Tan0010001 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSA DQPVQNAD
Sbjct: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 119
           PELDGGR KS+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of Tan0010001 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATD-QPV 60
           MATN  VFHP PIRAS   SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSA + Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 119
           QNADPELDGGR  SRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of Tan0010001 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATD-QPV 60
           MATN  VFHP PIRAS   SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSA + Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 119
           QNADPELDGGR  SRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of Tan0010001 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.8e-47
Identity = 102/126 (80.95%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRA-------SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATD 60
           MATN  VFHPAPI A       SSSGK +PNR  AAAPKWWSPIFGWSSEPDYVVSSA +
Sbjct: 1   MATNFAVFHPAPITASSSSSSSSSSGKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAE 60

Query: 61  -QPVQNADPELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 119
            Q +QNADPEL GGR +SRF PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDL
Sbjct: 61  VQSIQNADPELHGGRIRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDL 120

[Close]

BLAST of Tan0010001 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 13  IRASS-SGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSATDQPVQNADPELDGGRAKSR 72
           IRASS SG   P++ +  +  WW+P+FG  S+PDY+   ++   V     ++ G   K  
Sbjct: 13  IRASSGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGSGQK-- 72

Query: 73  FTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDR 116
           F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD++ R
Sbjct: 73  FRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGR 114

[Close]

BLAST of Tan0010001 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-21
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 1   MATNLPVFHPAPIRASSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYVVSSATDQPVQNA 60
           MAT +     + IRASS  +S+P R+K  ++  WW+P+FG SSEPDYV  +       N 
Sbjct: 1   MATIISCSALSSIRASS--ESDPARKKPVSSVSWWAPLFGMSSEPDYVNKTV------NL 60

Query: 61  DPELDGGRAKSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 113
           + +LD  +A+ R    C TEEKAK LR KT E+STFHD+MYHSAIASRLASD+
Sbjct: 61  ESDLD--KAEKRSLRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 103

The following BLAST results are available for this feature:

BLAST of Tan0010001 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004861.1	7.1e-56	94.07	uncharacterized protein LOC111498038 [Cucurbita maxima]	[more]
XP_022960101.1	2.1e-55	93.22	uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothet...	[more]
XP_023514525.1	3.9e-54	92.37	uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]	[more]
XP_038898524.1	4.3e-53	89.83	uncharacterized protein LOC120086132 [Benincasa hispida]	[more]
XP_008461069.1	1.0e-49	86.89	PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 unc...	[more]

BLAST of Tan0010001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTB2	3.5e-56	94.07	uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038...	[more]
A0A6J1H6P9	1.0e-55	93.22	uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC1114609...	[more]
A0A5D3CF29	4.8e-50	86.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEC0	4.8e-50	86.89	uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=...	[more]
A0A0A0K8X0	3.8e-47	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1	[more]

BLAST of Tan0010001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	2.5e-22	51.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	3.6e-21	52.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR34198:SF12	BNAA05G35680D PROTEIN	coord: 1..118
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010001.1	Tan0010001.1	mRNA