Tan0009922 (gene) Snake gourd v1

Overview


Name	Tan0009922
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Photosystem II reaction center Psb28 protein
Location	LG06: 18114047 .. 18115154 (-)
RNA-Seq Expression	Tan0009922
Synteny	Tan0009922

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGAGAGAGTGAGCCGCGAGTGGCTCTCCCCCTTACACACCTTCCCTAATCTTCAAACCACAACCATTCCACCTCTCTTTATCTTTCTTAATTCTCTCTCTACCAAACCTCTCTGCTCTGCGTTTCAATGGCGACTCTGCAATCTCTCGCTTCCACTCCCCATCTCCATCATCCTCCTTCTTCCACCAAAGGTAATCATCAATTCTATCACTCTCTCTCTCTCTCACTTCCCATTTTCCAACCCTAATTTTCCTCCCTGTCTTTCTCAGCTTTTTCTTCCGCCAGACTCCACCGGAGCGCCTTCTCCGCGTTCCACGGCCGCTCTCTTACCCTCTCCGGCGGAAGATGCCAGACTCTCGGTCGGCGGAGATGCGAAGCCTACGGACGACGGCTGGCGAATCCGATCGTGATGGTTCAGCCGAAGATTCAGTTCATCCAGGGAACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCGCGAGACGGCACAAACGGAATGGCGATTTTCAAGTTCGATCAGCCGTCGGTGTTCGACTCGTCGGCGGAGGTTGGGGACATTACTGGATTCTATATGATCGACGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGGAAGCCGGCAGGAATCGAGGCTAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAAATCATCGCCTAATCTGGTTTCTGCTTCCACTTCCACTTCTCATTCTTAATTCTTTGTTCTGATTCTGATTTGATTGACCTGTTTCGGCCAATTTTGTTTGCGTTGAATCATGATCAATACTGCGTTGATGCTGAAGAATTAATTGGAAATGTATTGTATGTTTCTATGATGCGCTCTTCTTCAACAAAATCAAGTCCTAAATTACAAGTTCTTACTCATTCATGTTATCTTCCCAAAAAAAAAAAAAAAAAGTTGTTTAATATGTGCATTCAATTCTTTGGACATAGAATTTCCAATTTTAGAGGAATCGGTCGAACATGCTTTCTTCTTTCTTTTGAAGGAAGATTAAG

mRNA sequence

CTGTGAGAGAGTGAGCCGCGAGTGGCTCTCCCCCTTACACACCTTCCCTAATCTTCAAACCACAACCATTCCACCTCTCTTTATCTTTCTTAATTCTCTCTCTACCAAACCTCTCTGCTCTGCGTTTCAATGGCGACTCTGCAATCTCTCGCTTCCACTCCCCATCTCCATCATCCTCCTTCTTCCACCAAAGCTTTTTCTTCCGCCAGACTCCACCGGAGCGCCTTCTCCGCGTTCCACGGCCGCTCTCTTACCCTCTCCGGCGGAAGATGCCAGACTCTCGGTCGGCGGAGATGCGAAGCCTACGGACGACGGCTGGCGAATCCGATCGTGATGGTTCAGCCGAAGATTCAGTTCATCCAGGGAACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCGCGAGACGGCACAAACGGAATGGCGATTTTCAAGTTCGATCAGCCGTCGGTGTTCGACTCGTCGGCGGAGGTTGGGGACATTACTGGATTCTATATGATCGACGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGGAAGCCGGCAGGAATCGAGGCTAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAAATCATCGCCTAATCTGGTTTCTGCTTCCACTTCCACTTCTCATTCTTAATTCTTTGTTCTGATTCTGATTTGATTGACCTGTTTCGGCCAATTTTGTTTGCGTTGAATCATGATCAATACTGCGTTGATGCTGAAGAATTAATTGGAAATGTATTGTATGTTTCTATGATGCGCTCTTCTTCAACAAAATCAAGTCCTAAATTACAAGTTCTTACTCATTCATGTTATCTTCCCAAAAAAAAAAAAAAAAAGTTGTTTAATATGTGCATTCAATTCTTTGGACATAGAATTTCCAATTTTAGAGGAATCGGTCGAACATGCTTTCTTCTTTCTTTTGAAGGAAGATTAAG

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCTTCCACTCCCCATCTCCATCATCCTCCTTCTTCCACCAAAGCTTTTTCTTCCGCCAGACTCCACCGGAGCGCCTTCTCCGCGTTCCACGGCCGCTCTCTTACCCTCTCCGGCGGAAGATGCCAGACTCTCGGTCGGCGGAGATGCGAAGCCTACGGACGACGGCTGGCGAATCCGATCGTGATGGTTCAGCCGAAGATTCAGTTCATCCAGGGAACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCGCGAGACGGCACAAACGGAATGGCGATTTTCAAGTTCGATCAGCCGTCGGTGTTCGACTCGTCGGCGGAGGTTGGGGACATTACTGGATTCTATATGATCGACGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGGAAGCCGGCAGGAATCGAGGCTAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGA

Protein sequence

MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

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BLAST of Tan0009922 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-53
Identity = 115/177 (64.97%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 6   SLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYGRRLAN 65
           ++AS       P    A SS    +S  S+F G SL     +  +L R R       +  
Sbjct: 9   AVASPISARAQPRRCPAGSSGGPSQSLHSSFGGVSLQCRRTKPASLHRSR-----PSMQV 68

Query: 66  PIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVGDITGFYM 125
            ++  +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF FDQPSVFDSSAE+GDITGFYM
Sbjct: 69  VMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYM 128

Query: 126 IDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 183
           ID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 129 IDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of Tan0009922 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.2e-50
Identity = 106/186 (56.99%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHP----PSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRC 60
           MA ++S+ S   ++H     P S    SS  +     S+F G  ++L   R Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTAL 60

Query: 61  EAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAE 120
                +  +  +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS E
Sbjct: 61  RP--MKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 LQFVKK 183
           LQFVKK
Sbjct: 181 LQFVKK 182

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BLAST of Tan0009922 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-34
Identity = 66/113 (58.41%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 70  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFD-SSAEVGDITGFYMIDE 129
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 130 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Tan0009922 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.2e-34
Identity = 64/113 (56.64%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 70  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFD-SSAEVGDITGFYMIDE 129
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 130 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

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BLAST of Tan0009922 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-33
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 74  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEV-GDITGFYMIDEEGVI 133
           IQFIQG +E  +PDVRLT+SRDG+ G A F+F  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 134 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of Tan0009922 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-86
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYG 60
           MATLQSLASTPHLHH PSSTK F+SA LHRSAFSAF+GRSL++SGG+CQTLGRRRCEA+G
Sbjct: 40  MATLQSLASTPHLHH-PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHG 99

Query: 61  RRLANPIV--MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVG 120
           R   NPIV  MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFD+PSVFDSSAEVG
Sbjct: 100 RP-RNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 159

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 160 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 219

Query: 181 FVKK 183
           FVKK
Sbjct: 220 FVKK 221

[Close]

BLAST of Tan0009922 vs. NCBI nr
Match: KAG6592844.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025252.1 Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.4 bits (838), Expect = 7.8e-86
Identity = 168/184 (91.30%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYG 60
           MATLQSLASTPHLHH PSSTK F+SA LHRSAFSAF+GRSL++SGG+CQTLGRRRCEA+G
Sbjct: 1   MATLQSLASTPHLHH-PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHG 60

Query: 61  RRLANPIV--MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVG 120
           R   NPIV  MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFD+PSVFDSSAEVG
Sbjct: 61  RP-RNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 120

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180

Query: 181 FVKK 183
           FVKK
Sbjct: 181 FVKK 182

[Close]

BLAST of Tan0009922 vs. NCBI nr
Match: XP_022960122.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 166/184 (90.22%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYG 60
           MATLQSLASTPHLHH PSSTK F+S  LHRSAFSAF+GRSL++ GG+CQTLGRRRCEA+G
Sbjct: 1   MATLQSLASTPHLHH-PSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHG 60

Query: 61  RRLANPIV--MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVG 120
           R   NPIV  MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFD+PSVFDSSAEVG
Sbjct: 61  RP-RNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 120

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180

Query: 181 FVKK 183
           FVKK
Sbjct: 181 FVKK 182

[Close]

BLAST of Tan0009922 vs. NCBI nr
Match: XP_023514182.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-84
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYG 60
           MATLQSLASTPHLHH PSSTK F+SA LHRSAFSAF+GRSL++SGG+CQTLGRRR EA+G
Sbjct: 1   MATLQSLASTPHLHH-PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFEAHG 60

Query: 61  RRLANPIV--MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVG 120
           R   NPIV  MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFD+PSVFDSSAEVG
Sbjct: 61  RP-RNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 120

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180

Query: 181 FVKK 183
           FVKK
Sbjct: 181 FVKK 182

[Close]

BLAST of Tan0009922 vs. NCBI nr
Match: XP_022991618.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPPS-STKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRR 60
           MATLQSLAST    PHLHHP S +TKAF+SARLH SAFSAFHGRSL +SGG+CQT+ RRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRRR 96

Query: 61  CEAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSA 120
           C+ +G RL+N I+MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF+QPSVFDSS 
Sbjct: 97  CKPHG-RLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 183
           GLQFVKK
Sbjct: 217 GLQFVKK 222

[Close]

BLAST of Tan0009922 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYG 60
           MATLQSLASTPHLHH PSSTK F+SA LHRSAFSAF+GRSL++SGG+CQTLGRRRCEA+G
Sbjct: 40  MATLQSLASTPHLHH-PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHG 99

Query: 61  RRLANPIV--MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVG 120
           R   NPIV  MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFD+PSVFDSSAEVG
Sbjct: 100 RP-RNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 159

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 160 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 219

Query: 181 FVKK 183
           FVKK
Sbjct: 220 FVKK 221

[Close]

BLAST of Tan0009922 vs. ExPASy TrEMBL
Match: A0A6J1H6H6 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111460964 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.5e-85
Identity = 166/184 (90.22%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPPSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRCEAYG 60
           MATLQSLASTPHLHH PSSTK F+S  LHRSAFSAF+GRSL++ GG+CQTLGRRRCEA+G
Sbjct: 1   MATLQSLASTPHLHH-PSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHG 60

Query: 61  RRLANPIV--MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVG 120
           R   NPIV  MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFD+PSVFDSSAEVG
Sbjct: 61  RP-RNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 120

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180

Query: 181 FVKK 183
           FVKK
Sbjct: 181 FVKK 182

[Close]

BLAST of Tan0009922 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.7e-83
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPPS-STKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRR 60
           MATLQSLAST    PHLHHP S +TKAF+SARLH SAFSAFHGRSL +SGG+CQT+ RRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRRR 96

Query: 61  CEAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSA 120
           C+ +G RL+N I+MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF+QPSVFDSS 
Sbjct: 97  CKPHG-RLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 183
           GLQFVKK
Sbjct: 217 GLQFVKK 222

[Close]

BLAST of Tan0009922 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 161/188 (85.64%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPPSST--KAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRR 60
           MATLQSLAST    PHLHHP S+    AF+SARLH SAFSAFHGRSL +SGG+CQT+ RR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCEAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSS 120
           RC+ +G RL+N I+MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF+QPSVFDSS
Sbjct: 97  RCKPHG-RLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 156

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 157 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 216

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 217 NGLQFVKK 223

[Close]

BLAST of Tan0009922 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 161/187 (86.10%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPPS-STKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRR 60
           MATLQSLAST    PHLHHP S +TKA +SARLH S FSAFHGRSL +SGG+CQT+ RRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKACASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 103

Query: 61  CEAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSA 120
           C+ YGR  +N I+MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF+QPSVFDSS 
Sbjct: 104 CQPYGRP-SNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 183
           GLQFVKK
Sbjct: 224 GLQFVKK 229

[Close]

BLAST of Tan0009922 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 198.7 bits (504), Expect = 3.9e-51
Identity = 90/115 (78.26%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 68  VMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAEVGDITGFYMID 127
           +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG+ITG YMID
Sbjct: 83  MMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMID 142

Query: 128 EEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 183
           EEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQFVKK
Sbjct: 143 EEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVKK 197

[Close]

BLAST of Tan0009922 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.1e-51
Identity = 106/186 (56.99%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHP----PSSTKAFSSARLHRSAFSAFHGRSLTLSGGRCQTLGRRRC 60
           MA ++S+ S   ++H     P S    SS  +     S+F G  ++L   R Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTAL 60

Query: 61  EAYGRRLANPIVMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDQPSVFDSSAE 120
                +  +  +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS E
Sbjct: 61  RP--MKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 LQFVKK 183
           LQFVKK
Sbjct: 181 LQFVKK 182

The following BLAST results are available for this feature:

BLAST of Tan0009922 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	1.4e-53	64.97	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	7.2e-50	56.99	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	1.5e-34	58.41	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	3.2e-34	56.64	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	1.6e-33	60.55	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of Tan0009922 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005079.1	2.7e-86	91.85	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]
KAG6592844.1	7.8e-86	91.30	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]
XP_022960122.1	1.1e-84	90.22	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita mosc...	[more]
XP_023514182.1	1.5e-84	90.76	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo...	[more]
XP_022991618.1	1.4e-82	87.17	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cuc...	[more]

BLAST of Tan0009922 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY50	1.3e-86	91.85	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H6H6	5.5e-85	90.22	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JWT9	6.7e-83	87.17	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JMC2	1.6e-81	85.64	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	1.6e-81	86.10	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Tan0009922 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.2	3.9e-51	78.26	photosystem II reaction center PSB28 protein	[more]
AT4G28660.1	5.1e-51	56.99	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 72..182 e-value: 2.3E-45 score: 155.4
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 74..179 e-value: 6.2E-43 score: 145.4
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 74..180 e-value: 3.0E-45 score: 150.9
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..182
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 71..180 score: 30.418152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009922.1	Tan0009922.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II