Tan0009897 (gene) Snake gourd v1

Overview
NameTan0009897
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSm-like protein LSM2
LocationLG07: 74717764 .. 74726933 (-)
RNA-Seq ExpressionTan0009897
SyntenyTan0009897
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCAAAAGTGAAAGAACGCACCCGTCGTGTTCCCTAGTATCGTTTTTCCTCCTGTTTTTGATAGTTCGGGCGGCATTTCAACCTTTACCAGTCGTTGATCGTCGAGGGCAGATAGAGTCATAGACTGAAGGCCGGCACCTTAAATCTCTAGTGAAAATGGTAATTTCTCCTTCATTCAAGTACTGGTTTCCATCGTTCAAGGTTGTCGTTATTGTTAATCGTACTTCAGTGCTCAAGCCTTTGCTTCTTTTTTGAATTTTTTTATCGTACCCCAGATCCTTCACGGTTTCTAAAATCTATGGTTTACTTCTGTTTGGACTTTGATTGGGGTTTTGTTTGTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAGAACGATCTAGCAATTAGGGGAACTTTGCACTCGGTAGATCAGTATCTCAACATCAAACTGGAAAATACGAGGGTCGTCGATCAAGACAAATACCCTCACATGGTATCCAACTTCTTTACGTGTATTATATTTAAGCGATATATTTTATTGATTATTATATGCGCTCACGCATTCTGCTGACCTGCACTTGAGTCGAGGGTAACTTCGATCTTGTTTTTCTTTGTTTACCATTTGTTATATGCACCCTACTTCTCATTTCTGCTTCTTCTGTCCTCCAGTTACCCTTTAATGCTCGTTTGATTCTAATAATTGTGAGGTTCTCTGACGGGATGTATGATATGTGGTTATAGTTCACAGACTATTCATACCACCGTTGTTACCGTCATCCTAAAATTTAAATTATATATTGTGTTTTGATTGAGAACGTTGATTGTCTTTCATCCTTGGGCATTTCTTGAATTTTCTTTGGGGAAAAATTTCAAGTAATTTTGTGGATGATTCGCAATTCGGTGAAAATTTCAAGTGATCTTGTCACTTGGTTAGAGTTCTTAGCAGGGACCATTGACTTTCTTTGTAGAATATTACATTACATATGAAGGGGAGGGATTTGAACTTACAACCTCTTAGGGGAAGTAAAGATGCCTTAACCACTAAATAGTACCTTTTTTTTTATATGATTTGAAGGTAACGGGGTTTAGGATTTTATTTGGTGCGAATTTGTTTATGTTGTTTTTTTTGGGATCTCCATCTCCTGTTCCGGTCATTTGTGAGGACTTTAGTCCCCTCATCTTCCTGTAAACTAAAATTTTGATACATGTAGAAACAGCAAGTATATTAAACTGGATCTATTATATTGTACATATGATGATTGGTTTTAGTTGTCTTACGATCACACATTTATTGGAAAATGTGAATTTTATCGGAGTAGTAAGTATTTGTGAGAGTAGAGGATTCTTGATAACTTCCTGCTGACTTTGATTTTCTAATCCCATTAAGATTTTAAAAGACTAGTTTTCATTGAACTAACCATCACGTATGTTGCATCTAGTTCTTGATTTTTATATCAACAAATCAACACTTAACAAAATTCGCTGTTGTAGTAGATTAGTAGGACTTTTCTGGTATTAATTTTTTACTTTTTATTTGTTACAATTTATTATCATTACGGTTATTTTTAAAGTTGGAGATTCATATGATTGTCAAGTAGTTTTTTTTTTTTGGAAACATTGTCAAGTAGTTCGTTAGGTTGATTTCTTTTTGTTAGTTAGTTTGTTGGGTAAAATACACTCATCGTCATTGAGTTTGCGGTTAGATTTTTATTAGGTCCCTAAGTTTAAAAAACTAACAATTAGTCATTGACCTTTAGGAAATGGTTATAAAAGGTCCTTGAGTCGTTAGTCGACTAAAGTAAAGATGATCTGAGGATTAACTTACTGACTAGATTTGCTGACATGATTTTTTCATGCGTTGAAAATTTATTCTATTTTTTTAGCTTGTGACATTTCTCTCTCTTTCATCCCCTACCTTTTTTCTTTCTCATTTTCTCCTTCGTTTCCTTGGTGAGCTGGCCTTTGCCCCCTAGCCCCTCTGCATCAACAAGGTCGTGTTTTTCACCAATTATTCCATGTATTCCAATTGTCGTGCCATGATCTTCATCGTCAGTGTCGTTCTCAATGCACAACTTTGCCAATCAAAGTATTCCAATTTGCTTTCACTTCACCGGTTTATTACATAGGTTGGCATCGCCCCCAATATTATTACTCACAATTTGATTTTCCAGACATCTTTGGATTGTTGTAAGCTAGATACAACATGGAATGCTACAAGAAGTTGACCAATGATGTGTCTTTTTCAAGAGGACTATCTCTCTCCCAAGTCCTCCTTTGGATAATCCCAAAATTCCCTTATTTATAACCAAGACACCCCTTATCTAATTACCAGTATGCTCTTACTACTATCCTACTAATATTCCTAACCTACCCCTCATTAATACTCTCACATGGTCTAGGAACTTTTTAGAAACATTTGTTGAAGGCTAGAGAGTAAACTATCAGTTTTTTAAACTTAGGAACCAAATAAAAACTTATCTTCAAGCTAGGGGACCAAAAGTGTATTTTACCCTATTTTATTTTTGTTGGTTGGTAAGTTAGCTAGTAAATGAAGGGATGATCTCTTGTATTTTTAATCGAAGGACGACCCTTGTAATCGGCCTTGCTTTGATATTGCCAAATGGCTCTTTTTTTTTTTTTTTTAAAAAAAATCTTTTGTAAGCTTTAAAGCTGGCAATGGGCAAACTATTAGTTTCTGGCATGACCGCTGGCGGGGGGAGACTCATCTCAAGTCTCTTTTTCCTGAGATGTCCAACTTCTCAATAAAAAAAAGGCCTTGCTAGTTGACTGTTGGAATGACAAACATGGAATGAGTGTTATTAAACTTGTACGATATACGAGTTGTATCATACGATTCAAATCGAAACGAAGGGAAAACGATTCAGAACGTGGATTTGAATAAAAAATAAATGGTATCGTATGATTCAAAAAATTGAATCGTACGAATCGGGTTGAATCACAACGTTGTGATTCTAAAAATAGTAAATCAAAAACTAAACAAAAAAGAAAATTGAAAGAATACCGTGTTTAGCGTGGACGGTTGTTGATAATGGCAGACGAAAATCATTAACTAATCAGAGAAGAATATGCCTTGCCAGTGCTGGTGATTAGAAGAAGAATGAAAGGGAAAGAGAGTCTTGAGAGAGAAGATGAAGAAGGAGTGTTGAAGAAGAAAGAGAGTTTAGAGAAGGAAACCTAAAATACTAAAATGAAAAGGGGGAAAATTGAAGTACGAGAAGAATAAAAATTTATATAATAAATACATCATTAAATATAAACCATGCCTGCCTTATTCTCAACACGTATCTCATGATAAAGTTGGAGACCCTTCATTTTCTTCGATTTTAACTATTTAATTGATGTTTTTTTCTTTATTATTTTCTTTTTTAAGTGGTTTTTTTTCTCTCTTTATTAAAGTGGGGTGGATTTCAAAAGTTTCCATATTTATTTTGAATTGTTTAAATTTGATTATTTTTCTCTGTATTTTAGGTTTTGTCATTAATTCTTTATATTTCAATATTACATACTAAATTGAAACTTACGATACATGATACATTACGATACACGATACGTTAAAATTTCATTTCGATACTCATTTTGTTTCACGAATTCACAACCTTGCATGGAACATGAGACCTGGGCTTTAGAAGAGGCCTATTTGACAGAGAGTTACCAACGTGTTTTCAACTACTTGCAAAGCTCGAAGGCTTTTGGTTTAACCAAAGGGAGGACGAGTTTTGTTGGACCTTGGACCCCTTGGGTTCTTTCTCCTCCAAGTCAACTTTCCGGAAGTTGGTGGGTAACAATTCGTGCATTAATGCTCCCCTAGCTAAGTTAATATGGCATTTTAAGATCCCTAAAAAGGTGAAAATTTTTCTCTGGTCGTTGATGCATAGAAAAATTCGCTCCAAAAAAAGTTTGCTTCTTTTGTGATTGGCCCCTCGAGGTGTTCTTTGTATGTAGTCGATGCGGAATCCCTAGATCACTTATTTCTCAATTGTTCCTTTGCAAGACAGTGTTGAGAATTCCTCCTTAATGTTTTTGATGTTCAAGTGTGTTTCCCTAACAAAATGTTCAAGTGTGTTTCCCTAACAAAGTGGATGATTGGGCGATGGAAATGCTTGGAGGGTGGAATTTGTGCGGAAAAGTTCAGGAGCTTTGGAAGTTTGCATCTCGTGCTCTCTTTGGGGTTTATGGTTGGAAAGAAATAAGAGAATTTTCGAAGATAAGTCTACCTCTCTTCTAAGTTTTTGGTCTTTTGTACAACTTAATGCTTCATGGTGATGCGTTAGCTACAATGTTCGAAAGCATCCTACTAATGCTTTTTTCAAGCGATTCTTGCTCTAGTATTGATATTAATCGATACTAGTAGGATAGTTGCTCCTTAACATTATGGGAAGGTTCGAAAACATCCTACTAATGCTCTTACAACTATCCTACTAATATTCACAACTTATTGTAAGGTATCTCCTTACGAGTATTAATATTAATAGAGGAAGAAAATGCCCAAAGGCTCAAAACGAGTCCGAAGTTATCAAAGAGGGTTCGTAAGTTCTCCTTCCTCTCCAAGCACTCACTAGCACAAAATAAAATAATCCTAAAAAACTAATAATGTCTTCTCCCTATTTATATACTACCCACAACCCCGAAGTGGTCCTACCCTTTACAGTCGTATAACTAATTCTCAGAGGGTGGAATGCCCTTTGTGCCCCTCCTTGTGTAATGCTTGATAATTGGAGGCCTAACATCACCACTCAGGGTCAAAGACATCTTATCCTCAAGGTGATAATCAAGAAATTGGCGGCAGAAATCGTTGAAATCCTCCCAAGTTGCCTCATGTGGAGGTAAACCCTTCCAACTCACTAAGGGTTGTTTGAGGCGCTGAGTGGATTATAATAACGTAGGGTTATAATAGTCTGTGGGTTATTGTAATCTGTGGAATCATATGATATTATTTAAAATCCAGAGTAGTATAGTTTGAGGTTATAATAGTCTGTGTTTGGGGTGCAAAGTATTCCACAGGTTATAATAACACAGTGCTCCAAACAGGCCCTAAGGGATTGTTTGGGGTGCTGAGTGAGTTATAAGTTTGTGGAATTATATAATATTATTTAAAATGTAGAGTTGTTTAGTAAGGAGTTATAATAATATGTGTTTGGGGTGTAGGGTATTCCACAGGTTATTATAACACAAGTTTTTATAACCTATGCCCCAAGCATGCCTTAAGAGCTCATAATTCCCAGTGTTGTTGTTTTTGCAATAGCCAAAAATGTTGTTCGGTTCAGTTGTCCATTCAAATTTCTCATTAAGAAGAGGGGAGCTTGGTTGCACCATGTGAGCTTCTCTTACTGCTTTTTTTAACTGAGATACATGGAACACAAGGTGGATAGAGGTCTTTCTAGTAGTTGGAGGCGATAAGCCACCTATCTGTTCCTTTCAACGAGATAAGGGCCAAAAAAAAACTTGGGAGTGAACTTCTCATTCCTTCTTTAAGCAATAGAAACTGATTGTTGGCGATAGAGATGTAGTTTAAGATAAACCCATTTCCCCACTGAGTATTCTACTTCTCCCCGCTTCTTATTCGCAAATTTCTCCATTCGTTCTTGGGTTGATAGTAGACGTTCCTTTAAGGCTCATAAAGCATCATCAAGTTCACTAAGTTGCTAATCCAACACTGCATTGGGTGTTTTCTGTTCCCCATATGAAATCAAGGGAGGTGGAGGTTAGTTTGTGGAGTTATTTAATCTGTGTTTAGGATGCAAAGTTATTTATTTTGGGTTATAATAGTCCTTGGTTGGGGTGCAAAGTCATTCATAGATTGTTATAACACAGGTTATTATAACATGCACCTCAAACATACTCTTAGTTTTTTAAACTTAGGAACCAAATAGAAACTTATCTTCAAACTAAGGGACCAAAAGTGTATTTTACCTTAGTTTTTTTTTGTTGGTTGGTAAGTTAGCTGGTAAATGAAGGGATGATCTCTTGTATTTTTAACACATTTTGAATGGGACAACATTTTTCTTTAGATTTTTTTTTTTTTGTTCGAGTATAAATGTTAAGCTGCATTATTAATAAATAGGTGGGCAAGAACACTCACGTAGTACTCATACAAATATTTTATATGTTGCATAAATAGGGACCATCTTCAGACCATGAACACTCATTTCGTATCAAGAACGTAGTTTTATAGATTATATAACAAACACATAGCCTAAGTACTGTGGTGGTTTTCTTTTTTTTACCAAATGTCTAGTTCGTCGAAGAAGGAGTGGATTCTTTTTTAGATTGATTTTGAGAAGGCCTATGACCATGTGGATGGGACTTCCTGGACAAGGTTCTGGCCAAAAAGGGTTTTGGATACAAATGGAGGTCTTGGATGTTGAGTTGTGTTCAAACTGTTCAGTTTTCCATTTTGGTCAATAGCAAGCCTAGGGGGAAGATTCAAGCTTCTAGGAGTCTGAGGCAAGGCGACCTCTACCTTTTCTCTTCTTGGTGGTGGTGGACACCTTGAGTAGATTAGTGTTTAAAGGAGTGGAGGCCAATATTATCCAAAGTTTTTAGGTCGGGAGAGATTGGGTTTCCCTTTCTCATCTCCAGTTTGCGGATGAGACTCTGTTCTTCCGTCCTGCTAGGGAGGATTCCTTTTTGAATCAGAATTAGTTTTGTTGGTTCTTCGAAGCTATGTTGGGGCTTTGTATTAATAGGGGAAAGTGTCAGGTTTTAGGAATCAATAATGATTTGGGGAAGTTGGCTAGATGGGCTTCGATAGCCGGGTGTAAGGTTGGGAGCTTTCCTTCGTCCTACCTAGGTCTTCCTCTGGGCAATAACCCTAGAAACCTCTCCTTTTGGGATCCGGTCTTGGACAAGGTTCATAAGAGATTGACTAATTGTAGGAAGAGTTATTTTTGATAGGGGGGAGACTCACTCTCATTCAGTCAGTCCTAAGTGGGATCATGTGCATTTTATGTCCCTCTTTAGGATGCCAAGTAAGGTTAATTAATAAGGTTTTGGAAAAGCTAATGAGATATTTCTTGTGGGAGGGGGTGGATGAAGGGAAAGGGTTTCACCTTGTGAGTTGGGAGGTTGTTTCTAGGCTGGTTGACCTTGGAGGTTTAGACATTGGTAATGCTAAGACTCGGAAGAAGACCCTTTTGGCTAAATGGCTTTGGCGATTCTATCATGAAGCTGATACCTTTTGGCATAAAGTCGTCGTAAGTAAGTATGGTCCTCATCCTTTTGAGTGGATTGTTGGTAGTGCCTTAACCCTGGGAAAGAAATCTCCTTTGAGTTGTTGTCCCTCATTTTTGAGGTTACCGAGTTGTGATATATGGTCGTGCTTTGACCATTGGGGATATGACAGAGGTTATCGAGTTATTGTCCCTCATTTTCGAGGTCAACCCAAGGCCCAATAGGGGCGATATTCGTATTTGGCGTCCTTGCCCTTCGAAAGTTTTTTCCCGTGCAACTGTCTTCAAATCTATTGTTAATCCCAATCCCTTGAGGGTCTCCATGTTCTCTTCATTGTGGAAGGTGAAGGTCCCCAAGAAGGTTAAGTTCTTGTTGTGGCAAGTTTGGTATGGTAGGGTTAACACCCTTGATCGAATCCTTGCTAGAGGTTCTCCCTTGGTGGGTCCTTTTTGTTGTATCCTTTGCAGGGGGTTGCTGCGGACTTGAGTCATATCCTCTAGGAGTGTGACTTCACATGTGGAGTGTGGAGTTGTTTATTGTTGGAGTTTGATTTTAGCTTTGTCCGTCCCCATAGTTGCACATACTTGTTGGTACTTCTTCTTTTGTTCTCGCCTTTTTGTGGGTGAGGGTTGTTTTTATGGCAGGCAGAGGTTCACATACTATCTGGAGTCTGTGGACTGAGAGGAACTATAGAACTTTCAGGAGGTGCGAGATCGAGTAGTGATATATGGTCCCTTGTAAGATTTTTATAGTTCCCTTTGGGGTTCGATGTCGAAGCTTTTTTATAACTATTCGCTTCTTATTTTGCTATATTGGAGCACTTTTCTCTAAGTAGCTTCCATTTTTTGTGGGCTTTGTTTTTGTATGCCCTTGTATTCTTTCATTTATTCTCAATGAAAGCTTGATTTTTCCATTAAAATTTAATGTTTGTTAGTTTAACACTACTTATACAAAGGAACCATCTTCATTCTTCAGTCTGTCAATATCTGGTGGTCTTTTCTGATTGATTCCAAATCCTTTTGTCGCTTCTTGTATGTAGGAAGACCACAATTTTGAAGAAAGAATATAGTTTTGGGGTCAACATAATCATGCCATGGTGTGTAAACTTTGGTTTAAAAGGTATCTTGTGATGGGCACAGGATATACAAGAACGAATTTGAAGCGTGTAGGAACGAATTTGGTTTTTTTTTTCTCCTATCTTGATATAAGCCAATCTAAAATTATATTCTGGTCGCTAAATAGATGGTAGTAGAAATATATTGACGTTGGTTGCTTATGATGGGTGAAAACCCTTGTTTTTTGCTTACGTCTGTTAAATCGATTATTTCACGAAGGTCTGTCCTCCCCCCAAATTCTGCAATCAAAACCTGTAATTTTGTTGGTGTCGTTGGACTAATGGAGTTCAAAATCAAAATTTCTCATTTCAGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTTGGAAGTTGGTTGGATTCACATGAAAATTTACTAGAGTGCACTTTTTAATATACAATGCAAGACAATTAGTAACTTGTACTTTCTGATCGTAGTGACACATTATTCTCTGTTCAAGTATTCTCGAGCAAAGAATCCAGTGACGTTCTATTCAACAGGTGATAGTGAAACCAGGGTTGAGGCCTTCCGATGGACCAAAATGTTGTTTTGGATTCGAATTTATATTCAAATAATTGTATAAACAAGTAGATGTTTAAGAACGCCCTACACATCCTTGTATATTCCTGCTGCTACTTTCTAGTGCTGCACACCCATTTAAAAAAATACAGATTTGGTTTTTGCAGAAAGTTAGAATAATTTAGTCATGTGATTTTAAAAGTTAAAAAAATTCATCCTATGGTTTTGATAAAA

mRNA sequence

ACCCCAAAAGTGAAAGAACGCACCCGTCGTGTTCCCTAGTATCGTTTTTCCTCCTGTTTTTGATAGTTCGGGCGGCATTTCAACCTTTACCAGTCGTTGATCGTCGAGGGCAGATAGAGTCATAGACTGAAGGCCGGCACCTTAAATCTCTAGTGAAAATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAGAACGATCTAGCAATTAGGGGAACTTTGCACTCGGTAGATCAGTATCTCAACATCAAACTGGAAAATACGAGGGTCGTCGATCAAGACAAATACCCTCACATGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTTGGAAGTTGGTTGGATTCACATGAAAATTTACTAGAGTGCACTTTTTAATATACAATGCAAGACAATTAGTAACTTGTACTTTCTGATCGTAGTGACACATTATTCTCTGTTCAAGTATTCTCGAGCAAAGAATCCAGTGACGTTCTATTCAACAGGTGATAGTGAAACCAGGGTTGAGGCCTTCCGATGGACCAAAATGTTGTTTTGGATTCGAATTTATATTCAAATAATTGTATAAACAAGTAGATGTTTAAGAACGCCCTACACATCCTTGTATATTCCTGCTGCTACTTTCTAGTGCTGCACACCCATTTAAAAAAATACAGATTTGGTTTTTGCAGAAAGTTAGAATAATTTAGTCATGTGATTTTAAAAGTTAAAAAAATTCATCCTATGGTTTTGATAAAA

Coding sequence (CDS)

ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAGAACGATCTAGCAATTAGGGGAACTTTGCACTCGGTAGATCAGTATCTCAACATCAAACTGGAAAATACGAGGGTCGTCGATCAAGACAAATACCCTCACATGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA

Protein sequence

MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Homology
[Close]
BLAST of Tan0009897 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.2e-46
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]
BLAST of Tan0009897 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.1e-33
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]
BLAST of Tan0009897 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.1e-33
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]
BLAST of Tan0009897 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1  MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREAR 92
          FIRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]
BLAST of Tan0009897 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-27
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN 
Sbjct: 1  MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRRE 90
          FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]
BLAST of Tan0009897 vs. NCBI nr
Match: XP_010038129.1 (sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like protein LSM2 [Gossypium raimondii] >XP_016739463.2 sm-like protein LSM2 [Gossypium hirsutum] >XP_017617356.1 PREDICTED: sm-like protein LSM2 [Gossypium arboreum] >XP_017983243.1 PREDICTED: sm-like protein LSM2 [Theobroma cacao] >XP_021279792.1 sm-like protein LSM2 [Herrania umbratica] >XP_022155587.1 sm-like protein LSM2 [Momordica charantia] >XP_022159883.1 sm-like protein LSM2 [Momordica charantia] >XP_022771071.1 sm-like protein LSM2 [Durio zibethinus] >XP_022931098.1 sm-like protein LSM2 [Cucurbita moschata] >XP_022995665.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023533254.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo] >XP_028067379.1 sm-like protein LSM2 [Camellia sinensis] >XP_028090491.1 sm-like protein LSM2 [Camellia sinensis] >XP_030451694.1 sm-like protein LSM2 [Syzygium oleosum] >XP_030514491.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516641.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516643.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_031373487.1 sm-like protein LSM2 [Punica granatum] >XP_038708368.1 sm-like protein LSM2 [Tripterygium wilfordii] >XP_038900043.1 sm-like protein LSM2 [Benincasa hispida] >XP_038900044.1 sm-like protein LSM2 [Benincasa hispida] >XP_039012105.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039013864.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039025119.1 sm-like protein LSM2 [Hibiscus syriacus] >KAB2016243.1 hypothetical protein ES319_D08G082900v1 [Gossypium barbadense] >KAF8006546.1 hypothetical protein BT93_K0754 [Corymbia citriodora subsp. variegata] >KAG6606434.1 Sm-like protein LSM2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036376.1 Sm-like protein LSM2 [Cucurbita argyrosperma subsp. argyrosperma] >TYG56740.1 hypothetical protein ES288_D08G087800v1 [Gossypium darwinii] >TYH57396.1 hypothetical protein ES332_D08G086900v1 [Gossypium tomentosum] >TYI68372.1 hypothetical protein E1A91_D08G085000v1 [Gossypium mustelinum])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. NCBI nr
Match: XP_039061884.1 (sm-like protein LSM2 [Hibiscus syriacus])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1   MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 33  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 92

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 93  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 125

[Close]
BLAST of Tan0009897 vs. NCBI nr
Match: KAF5947938.1 (hypothetical protein HYC85_013895 [Camellia sinensis])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1   MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 61  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 120

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 121 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 153

[Close]
BLAST of Tan0009897 vs. NCBI nr
Match: XP_039035726.1 (sm-like protein LSM2 [Hibiscus syriacus])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVIDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. NCBI nr
Match: XP_008461281.1 (PREDICTED: sm-like protein LSM2 [Cucumis melo] >XP_021898297.1 LOW QUALITY PROTEIN: sm-like protein LSM2 [Carica papaya] >XP_026422975.1 sm-like protein LSM2 [Papaver somniferum] >XP_026453489.1 sm-like protein LSM2 [Papaver somniferum] >XP_031279939.1 sm-like protein LSM2 [Pistacia vera] >XP_031285462.1 sm-like protein LSM2 [Pistacia vera] >PIN18182.1 putative snRNP core protein [Handroanthus impetiginosus] >RZC52409.1 hypothetical protein C5167_020832 [Papaver somniferum] >RZC81286.1 hypothetical protein C5167_043834 [Papaver somniferum])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. ExPASy TrEMBL
Match: A0A5D2BJZ3 (Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. ExPASy TrEMBL
Match: A0A0B0N830 (Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=LOC108461891 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. ExPASy TrEMBL
Match: A0A5J5UQ23 (Sm-like protein LSM2 OS=Gossypium barbadense OX=3634 GN=ES319_A08G077200v1 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. ExPASy TrEMBL
Match: A0A5D2TT01 (Sm-like protein LSM2 OS=Gossypium mustelinum OX=34275 GN=E1A91_A08G081000v1 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. ExPASy TrEMBL
Match: A0A6J1E038 (Sm-like protein LSM2 OS=Momordica charantia OX=3673 GN=LOC111026167 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of Tan0009897 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.0e-47
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]
BLAST of Tan0009897 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

[Close]
BLAST of Tan0009897 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

[Close]
BLAST of Tan0009897 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SVRGNNIRYYIL-PDSLNLETL 79

[Close]
BLAST of Tan0009897 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0 

Query: 6  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 77

Query: 66 VVRYV 71
           V Y+
Sbjct: 78 NVLYI 80

The following BLAST results are available for this feature:
BLAST of Tan0009897 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1H5954.2e-4694.62Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1[more]
Q9Y3333.1e-3374.44U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV... [more]
O359003.1e-3374.44U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S... [more]
Q54TF61.1e-3067.03Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX... [more]
P382035.7e-2766.29U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC... [more]
BLAST of Tan0009897 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_010038129.11.2e-45100.00sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like pro... [more]
XP_039061884.11.2e-45100.00sm-like protein LSM2 [Hibiscus syriacus][more]
KAF5947938.11.2e-45100.00hypothetical protein HYC85_013895 [Camellia sinensis][more]
XP_039035726.11.5e-4598.92sm-like protein LSM2 [Hibiscus syriacus][more]
XP_008461281.11.5e-4598.92PREDICTED: sm-like protein LSM2 [Cucumis melo] >XP_021898297.1 LOW QUALITY PROTE... [more]
BLAST of Tan0009897 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D2BJZ35.7e-46100.00Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 S... [more]
A0A0B0N8305.7e-46100.00Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=LOC108461891 PE=3 SV=1[more]
A0A5J5UQ235.7e-46100.00Sm-like protein LSM2 OS=Gossypium barbadense OX=3634 GN=ES319_A08G077200v1 PE=3 ... [more]
A0A5D2TT015.7e-46100.00Sm-like protein LSM2 OS=Gossypium mustelinum OX=34275 GN=E1A91_A08G081000v1 PE=3... [more]
A0A6J1E0385.7e-46100.00Sm-like protein LSM2 OS=Momordica charantia OX=3673 GN=LOC111026167 PE=3 SV=1[more]
BLAST of Tan0009897 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03330.13.0e-4794.62Small nuclear ribonucleoprotein family protein [more]
AT3G07590.12.4e-0429.27Small nuclear ribonucleoprotein family protein [more]
AT3G07590.22.4e-0429.27Small nuclear ribonucleoprotein family protein [more]
AT4G02840.12.4e-0429.27Small nuclear ribonucleoprotein family protein [more]
AT3G59810.14.1e-0433.85Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 1.3E-17
score: 74.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..71
e-value: 7.8E-17
score: 60.7
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..93
e-value: 7.3E-51
score: 168.1
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..91
IPR016654U6 snRNA-associated Sm-like protein LSm2CDDcd01725LSm2coord: 2..90
e-value: 1.64158E-62
score: 182.403
NoneNo IPR availableGENE3D2.30.30.100coord: 1..92
e-value: 7.3E-32
score: 110.6
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0009897.1Tan0009897.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006397 mRNA processing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0120115 Lsm2-8 complex
cellular_component GO:0000932 P-body
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding