Tan0009829 (gene) Snake gourd v1

Overview


Name	Tan0009829
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L24
Location	LG08: 69937610 .. 69940021 (-)
RNA-Seq Expression	Tan0009829
Synteny	Tan0009829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCATCAACAACGCGGCAGAAGCTTAGCAACGCAGCGGCCATGGTTCTCAAGTTCGTCAAATCCTTCATCTCTATTTTCATCTCTTCTTAGATCCCAGTTCTATTTTCATTCGATATCCTTCGTGTATATGCTGACATGTTTTTCTTGTTCCGTTTTCGTCTTTGTTCGTGCATCGTTAATGCTCGAGAAATCTAAGGTTTTCCGTGTGTTTGAATGTGAGGAATGGGATTTTTCCTTGAAAGTATTCCATTTGAGAAACTCTCAAACATGAGCGAAGCCCAATTTGTATGTTATTTTAATGAGAATTTTAATTACTTTATTCATGAAGCATAATCAGGGTTGCTATTTGCATCGTTTCTGGTATTGGTGTGGTTAAAATGACCAAAACATTGGGATCGGCATCTGTTATGTTTGAATAATCTTGTTGGGCGGAAGTACTTATGATGGAAATTTAGTCACAGGGTATGTAGCTTGATTAAAGGAGACGGTTTAGAAGAGGAGTTCAGTTGTTTGTCTCTTACCCATTGTTGTTGTTTATTGTTTGATCAAATGGGTGTTGAGTAACTGTATCGTAGTTACTTGTTGAAACTAAGTCTGAAAGCTTCGGTATTGATGTGCTCAATCTTGTTCGTGGACTCTGTATGTGGGAAAAGAAGTACATGAGCTAATATGATGAACATAGCTTATTTTTAAATATGTTTTCGAGATATTAATTCTGCCCCTAATAGTTTGAATACTTGCTTTTCAGGACTGAACTTTGTCGATTCAGTGGTGGCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGCTGATTCTCAGGTAATTTTGATTACTATATTTTAGATTGTTTTGAGATCAACTGATAAATCTATTTTCTTAATAATTATAGGAAACTTTGTAAACGCTTATTTCTTCTCTAATTTACATTTACCCAACCTCTCTACAATGGGGTTTGGAGGTTTATTATTTCATTTATTTGAATTATTCTCACCGTTTTCCCTCCTTGTTTGACTTTTTCTCTGTCAATATGTTAGGTGTTTCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAACCATCGAAGCTTACCTGGACAGCAATGTATAGGAAGCAGCACAAGAAGGTGTTATTAAGAATTTATATGGACATTGTTTTTATAGTTTAGTTCCTGTTCATATTTCTTACTTTATTAAGTCCATCGAGGGAATGTTGTCTATAAATACCAAATACGAATCCCATCACATGGATAATGATCATCTTCATGCGAGCATGATCCCACCGATAATAGTAAATCTAGAAACAATCTCATAAGAGGACTACCAACTAGTTAGGTTTCTAGTCTTCTGATGGGATCTATTGTGGATTCAATTTCCACCTAGGAATAGTTTTGCAAATGCAAGTCACATTGCTGGATATTTTCTGTGTTGCAATTAATTAAATAACTAGATCCAGATCTAGAGTTTATAATTTGAGTTGAATGGTAGCCTCCCAGGGGTGCTGTTGTTGGTAGGGGCTCTGGGTCTCCTGATCATACCAACTTTGAGGTCTTAGGTTTGCGCCCTCCTATAAATATAGGGGAGCAAAGCTCCGACTTTCAGGTATCCAAAAAAATATGAGTCAGAGTGGTAATTTAATAATCTTACCAAGTGAGGCATTTAGTTATATGACCAAAATGATTCCATTTGCTAAAAGTGTTAAAAGTAAATAAATCATCTCTCAACCTTGGCCTTAGCCGTTCTCTCGAGTGTTGTATTTGGGTTTGCTTTGGACAATTGACCCTTATCCATCTTATTTTGACATCCATAGGATATTGCTCAAGAGGCCGTAAAGAAGAGAAGACGTACCACCAAGAAGCCCTACTCCAGGTCCATTGTAGGTGCAACGTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCGCTGCGGTGTGTTCTCTTATGAATGGATTAAACTAGAATAGGAAAATTGTATTCCAAGCATATGAATTTGTACCGAATTCATGAATTTCTGATTGAATTGCAGTGAAATTAAGGAGAGGATTAAGAAGACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGATGGCAAAGACACAGAAGGCGCCAGGTAAGGGTAACGTTCCTAAGGGAGCTGCACCCAAGGGTCCAAAGCTCGGTGGTGGTGGTGGAAAGCGTTGATCTTCTACATGGCTTTGTTTTGTTTTGTTGTTTAAATTGCCTGATTTGGTAGATAGGACATCTGATAATTTTGAGTTCTTTATGTGTTATGAGAAGTGGTTCCTATTAATTGATAAACTTATTGTGCACTTAGTTTTATTTGGAAAAGCTTTACAATCGAGCTATGCACTTCTTTTTTGGTT

mRNA sequence

GTTTCATCAACAACGCGGCAGAAGCTTAGCAACGCAGCGGCCATGGTTCTCAAGACTGAACTTTGTCGATTCAGTGGTGGCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGCTGATTCTCAGGTGTTTCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAACCATCGAAGCTTACCTGGACAGCAATGTATAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCCGTAAAGAAGAGAAGACGTACCACCAAGAAGCCCTACTCCAGGTCCATTGTAGGTGCAACGTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCGCTGCGTGAAATTAAGGAGAGGATTAAGAAGACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGATGGCAAAGACACAGAAGGCGCCAGGTAAGGGTAACGTTCCTAAGGGAGCTGCACCCAAGGGTCCAAAGCTCGGTGGTGGTGGTGGAAAGCGTTGATCTTCTACATGGCTTTGTTTTGTTTTGTTGTTTAAATTGCCTGATTTGGTAGATAGGACATCTGATAATTTTGAGTTCTTTATGTGTTATGAGAAGTGGTTCCTATTAATTGATAAACTTATTGTGCACTTAGTTTTATTTGGAAAAGCTTTACAATCGAGCTATGCACTTCTTTTTTGGTT

Coding sequence (CDS)

ATGGTTCTCAAGACTGAACTTTGTCGATTCAGTGGTGGCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGCTGATTCTCAGGTGTTTCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAACCATCGAAGCTTACCTGGACAGCAATGTATAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCCGTAAAGAAGAGAAGACGTACCACCAAGAAGCCCTACTCCAGGTCCATTGTAGGTGCAACGTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCGCTGCGTGAAATTAAGGAGAGGATTAAGAAGACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGATGGCAAAGACACAGAAGGCGCCAGGTAAGGGTAACGTTCCTAAGGGAGCTGCACCCAAGGGTCCAAAGCTCGGTGGTGGTGGTGGAAAGCGTTGA

Protein sequence

MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR

Homology

[Close]

BLAST of Tan0009829 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.4e-73
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K QK+ GKGNV KGA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Tan0009829 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 8.7e-71
Identity = 145/160 (90.62%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAA-PKGPKLGG 160
           KTKDEKKAKKAEV  K+QK+ GKG++ KG A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Tan0009829 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 9.6e-70
Identity = 140/164 (85.37%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+PK AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Tan0009829 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.4e-68
Identity = 143/164 (87.20%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV    +   GKG V KG+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of Tan0009829 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-67
Identity = 141/165 (85.45%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPK-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N PK  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Tan0009829 vs. NCBI nr
Match: XP_022951028.1 (60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal protein L24 [Cucurbita maxima] >XP_023538770.1 60S ribosomal protein L24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK+QKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. NCBI nr
Match: KAG6596527.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028061.1 60S ribosomal protein L24 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.5 bits (763), Expect = 3.5e-77
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AK+QKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. NCBI nr
Match: XP_028760594.1 (60S ribosomal protein L24-like [Prosopis alba])

HSP 1 Score: 297.7 bits (761), Expect = 6.0e-77
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGGKIYPGKGIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 23  MVLKTELCRFSGGKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 82

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 83  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 142

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK QKA GKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 143 KTKDEKKAKKAEVMAKAQKAQGKGNVPKGAAPKGPKLGGGGGKR 186

[Close]

BLAST of Tan0009829 vs. NCBI nr
Match: XP_028788866.1 (60S ribosomal protein L24 isoform X1 [Prosopis alba])

HSP 1 Score: 297.7 bits (761), Expect = 6.0e-77
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGGKIYPGKGIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGGKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK QKA GKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKAQKAQGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. NCBI nr
Match: KAF7804357.1 (60S ribosomal protein L24 [Senna tora])

HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 156/164 (95.12%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 23  MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 82

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 83  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 142

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK QKA GKGN+PKGAAPKGPK+GGGGGKR
Sbjct: 143 KTKDEKKAKKAEVMAKAQKAGGKGNIPKGAAPKGPKIGGGGGKR 186

[Close]

BLAST of Tan0009829 vs. ExPASy TrEMBL
Match: A0A6J1L0R7 (60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.8e-78
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK+QKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. ExPASy TrEMBL
Match: A0A6J1GGJ5 (60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.8e-78
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK+QKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. ExPASy TrEMBL
Match: A0A6J1CUE5 (60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.2e-76
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AK+QKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. ExPASy TrEMBL
Match: A0A1S3B6I5 (60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.2e-76
Identity = 158/164 (96.34%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AK+QKAPGKGNV KG A KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. ExPASy TrEMBL
Match: A0A061FPV3 (60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_043464 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.1e-76
Identity = 156/164 (95.12%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAE+MAKTQK  GKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Tan0009829 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 264.2 bits (674), Expect = 6.8e-71
Identity = 140/164 (85.37%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+PK AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Tan0009829 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-68
Identity = 141/165 (85.45%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKAPGKGNVPK-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N PK  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Tan0009829 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-10
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 3   LKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F    IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 120

Query: 123 IKKTKDEK---KAKKAEVMAKTQKAPGKGNVPKGAAPK 154
           +K  K +K     K+ +      +APG   +    + K
Sbjct: 121 LKPNKQKKLNDDMKELDQNIHMVQAPGAQKIKVDVSEK 149

[Close]

BLAST of Tan0009829 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-10
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 3   LKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F    IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 120

Query: 123 IKKTKDEK---KAKKAEVMAKTQKAPGKGNVPKGAAPK 154
           +K  K +K     K+ +      +APG   +    + K
Sbjct: 121 LKPNKQKKLNDDMKELDQNIHMVQAPGAQKIKVDVSEK 149

The following BLAST results are available for this feature:

BLAST of Tan0009829 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	2.4e-73	89.57	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	8.7e-71	90.63	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
Q42347	9.6e-70	85.37	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P50888	2.4e-68	87.20	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
P38666	2.6e-67	85.45	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of Tan0009829 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951028.1	1.2e-77	96.95	60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal pro...	[more]
KAG6596527.1	3.5e-77	96.34	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_028760594.1	6.0e-77	96.95	60S ribosomal protein L24-like [Prosopis alba]	[more]
XP_028788866.1	6.0e-77	96.95	60S ribosomal protein L24 isoform X1 [Prosopis alba]	[more]
KAF7804357.1	3.0e-76	95.12	60S ribosomal protein L24 [Senna tora]	[more]

BLAST of Tan0009829 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0R7	5.8e-78	96.95	60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1	[more]
A0A6J1GGJ5	5.8e-78	96.95	60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=...	[more]
A0A6J1CUE5	3.2e-76	95.12	60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV...	[more]
A0A1S3B6I5	3.2e-76	96.34	60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1	[more]
A0A061FPV3	7.1e-76	95.12	60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_043464 P...	[more]

BLAST of Tan0009829 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	6.8e-71	85.37	ribosomal protein L24	[more]
AT3G53020.1	1.9e-68	85.45	Ribosomal protein L24e family protein	[more]
AT2G44860.1	3.9e-10	32.91	Ribosomal protein L24e family protein	[more]
AT2G44860.2	3.9e-10	32.91	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..139
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..138 e-value: 1.6E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..164
None	No IPR available	PANTHER	PTHR10792:SF40	60S RIBOSOMAL PROTEIN L24	coord: 3..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 3.8E-4 score: 29.8
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 1.8E-28 score: 98.6
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 3..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 6.70072E-20 score: 76.0718
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 2.9E-33 score: 115.9
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009829.1	Tan0009829.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome