Tan0009807 (gene) Snake gourd v1

Overview


Name	Tan0009807
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription elongation factor 1 homolog
Location	LG01: 8162558 .. 8164340 (-)
RNA-Seq Expression	Tan0009807
Synteny	Tan0009807

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATAAATACCAGCCCCCCTCAAATTCTTGCTCCCAATTCTTCAAATCGACCAGCGAGACGATTTCATCAACGAACGATAATCCCTCCCAATTTGATCAGCGATTAGGTACGACTTCTTCGTTCTCTCTTCTCTTAGGATTCTTAGTTTTAGGGTTTTTGTTAAGCTTTCAATTGGCAGATTATGTGCTTTTTTCTTGCTGCCTGCAACCTAGGGTTCTTCTCGTTGTCGTATTCTGTGGTGGACTTCTCGTTCTTGTGTAATCTTCAACATTCTTTGCGTTTTTCGTTGCGGTTGGTTATTCTTTGGTTCGTATCTACTTTTTTCGTTGGTGGGTGGAGAATAGAATTTCTGGAAATGCGTTTCTGGATATTGTGCGTGAAATTGAGTAATTGGTGGTGTGGTGCTGCTCTTATTCAATTTGGGAGACGTTGATTGAGTAACTTTTTTCTATTATATTTATGGAAAGAATGGGATTTTCCGGGTTTTTTTTAGTTATTATTTGCTTTTTTTCTTTCCATAGTCGATGAATGTCTATGATTTTGTAGGGAAGTGAAACTGTTTTTTTTTCTTAATTACGGCCGTTCATGCATTGAATATAAATGTTTTGGAACGAGGATGGATGGTGAATTTGAGTTTTAATGTGCGAGGATTGGTTGCTTATTGACTGCTTGATATGCTCGAATGATCTAGTCTTTATATCCTTTCAAGTTTAATTGCAACGCTCATTTTGAAGAGTGATTGATGGTGATATTGTTTATGAATGTGGACAACCTCACGCCACAGAGATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATGTAAGTTTGCATTTGGTTCCTTGTGGGTTATGGTAACAACTAACACGTGGGGGAGGGATTTGTTTGAAGGATTTTAGTATTTCCAGGCACAATGAGAAAGCTGGAAGGGCGAATGTGTATAATACCATTAACTTGTACCATGGATTAGTCTCAGTGTCTAGGTGCCTCATTTGGTTTGCATTGTGATGAGGGTGTTTGTATGGTTTTAGTGATATGAAGAACCTGATTGGGGAAGCTTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGGTATTCTCTTCAAATCTCTTATTCTACGAGTGTTAGCTGTGTTTTCACTATCTGTTGTGTGTGTTTTTTATGCTTTATATTATGACGTGATTGAAGCAATTTAGGAATTTTTTAGAATATTTTTTCATGAATACTTTATGCTCTACTGGAGTAGTTTTTGTTTGGTTTGAACTCTAATAAGGGCATGGGAGTAGTCTAATGAACCCCATTTTCTCTGTGCACAGAATAGATGTATGTATGGAAGATTTCTTTTGCAGTTGTTCCACTGTCTATCATGACTAGTTTTTCGTTCCTGTGTAGGGAAGTTTATTAAATAAAAATGTGTCCAAGTGTAGGTAATCATGTATGATTTAGGTTAATCTGAAACTGTTTTCATTAGTCTGTCTGGATAAATTAAGTTGCACTAATAATCCTTCTCTTTTATTTTGCAGCCTTGACTGAGGCAATAGACATGTAAGTTAAAATTAAACACTGCCGGTTGTTGTTGTCAATATTGATGCTCTATAGTGCTTTGTTGACACGATGTTGTTTTGATCAGATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGGTGCCTAG

mRNA sequence

ATGTCTATAAATACCAGCCCCCCTCAAATTCTTGCTCCCAATTCTTCAAATCGACCAGCGAGACGATTTCATCAACGAACGATAATCCCTCCCAATTTGATCAAGATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCTTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGCCTTGACTGAGGCAATAGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGGTGCCTAG

Coding sequence (CDS)

ATGTCTATAAATACCAGCCCCCCTCAAATTCTTGCTCCCAATTCTTCAAATCGACCAGCGAGACGATTTCATCAACGAACGATAATCCCTCCCAATTTGATCAAGATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCTTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGCCTTGACTGAGGCAATAGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGGTGCCTAG

Protein sequence

MSINTSPPQILAPNSSNRPARRFHQRTIIPPNLIKMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

Homology

[Close]

BLAST of Tan0009807 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.9e-42
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDD 122
            ALTE IDIYSEWIDECERVNN+EDD
Sbjct: 61  NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Tan0009807 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.6e-39
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDD 122
           TALTEAIDIYSEWIDECERVN  EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Tan0009807 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I
Sbjct: 1   MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 96  TALTEAIDIYSEWIDECERVNN 118
            +L++ +D+YS+W D  E VN+
Sbjct: 61  NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Tan0009807 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 95
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 96  ITALTEAIDIYSEWIDECERVN 117
           IT L+E +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Tan0009807 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 95
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 96  ITALTEAIDIYSEWIDECERVN 117
           IT L+E +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Tan0009807 vs. NCBI nr
Match: XP_038896920.1 (transcription elongation factor 1 homolog [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 97/126 (76.98%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MSINTSPPQILAPNSSNRPARRFHQRTIIPPNLIK---MGKRKSRAKPPPKKRMDKLDTV 60
           MSIN +        SS RPA +   RT I P  I    MGKRKSRAKPPPKKRMDKLDTV
Sbjct: 1   MSINITTTSNFIFYSSIRPAIQLQLRTTISPIWISDQDMGKRKSRAKPPPKKRMDKLDTV 60

Query: 61  FSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNN 120
           FSCPFCNHGTSVECRID+KNLIGEASCRICQE FSTTITAL+EAID+YSEWIDECERVNN
Sbjct: 61  FSCPFCNHGTSVECRIDLKNLIGEASCRICQESFSTTITALSEAIDVYSEWIDECERVNN 120

Query: 121 LEDDGA 124
           LEDD A
Sbjct: 121 LEDDAA 126

[Close]

BLAST of Tan0009807 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 184.1 bits (466), Expect = 7.2e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TALTE IDIYSEWIDECERVNNLEDDGA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Tan0009807 vs. NCBI nr
Match: KAB1222011.1 (hypothetical protein CJ030_MR2G018503 [Morella rubra])

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRSKPPPKKRMDKLDTVFSCPFCNHGTSIECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TALTE IDIYSEWIDECERVNNLEDDGA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Tan0009807 vs. NCBI nr
Match: XP_022142747.1 (transcription elongation factor 1 homolog [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TALTE IDIYSEWIDECERVNNLE+D A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDDA 88

[Close]

BLAST of Tan0009807 vs. NCBI nr
Match: XP_004146241.1 (transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >KGN57642.1 hypothetical protein Csa_011748 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TAL+EAIDIYSEWIDECERVNNLEDD A
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Tan0009807 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.5e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TALTE IDIYSEWIDECERVNNLEDDGA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Tan0009807 vs. ExPASy TrEMBL
Match: A0A6A1W9X5 (Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR2G018503 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRSKPPPKKRMDKLDTVFSCPFCNHGTSIECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TALTE IDIYSEWIDECERVNNLEDDGA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Tan0009807 vs. ExPASy TrEMBL
Match: A0A0A0LAG5 (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TAL+EAIDIYSEWIDECERVNNLEDD A
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Tan0009807 vs. ExPASy TrEMBL
Match: A0A6J1CNR1 (Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC111012788 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TALTE IDIYSEWIDECERVNNLE+D A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDDA 88

[Close]

BLAST of Tan0009807 vs. ExPASy TrEMBL
Match: A0A1S3C2B7 (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDDGA 124
           TAL+EAIDIYSEWIDECERVNNLEDD A
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Tan0009807 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 161.4 bits (407), Expect = 4.7e-40
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 36  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 95
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 96  TALTEAIDIYSEWIDECERVNNLEDD 122
           TALTEAIDIYSEWIDECERVN  EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of Tan0009807 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	2.9e-42	91.86	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	6.6e-39	86.05	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
P36053	1.5e-19	50.00	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
A4IFR3	1.5e-19	52.44	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	1.5e-19	52.44	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]

BLAST of Tan0009807 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896920.1	1.3e-44	76.98	transcription elongation factor 1 homolog [Benincasa hispida]	[more]
XP_010090451.1	7.2e-43	97.73	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
KAB1222011.1	2.1e-42	95.45	hypothetical protein CJ030_MR2G018503 [Morella rubra]	[more]
XP_022142747.1	2.7e-42	96.59	transcription elongation factor 1 homolog [Momordica charantia]	[more]
XP_004146241.1	2.7e-42	96.59	transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PRED...	[more]

BLAST of Tan0009807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9R774	3.5e-43	97.73	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
A0A6A1W9X5	1.0e-42	95.45	Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR...	[more]
A0A0A0LAG5	1.3e-42	96.59	Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23...	[more]
A0A6J1CNR1	1.3e-42	96.59	Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A1S3C2B7	1.3e-42	96.59	Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606...	[more]

BLAST of Tan0009807 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	4.7e-40	86.05	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 37..113 e-value: 2.6E-30 score: 104.3
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 27..123
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 51..117 e-value: 1.1E-28 score: 101.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 36..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009807.1	Tan0009807.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0008023	transcription elongation factor complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II complex binding
molecular_function	GO:0003746	translation elongation factor activity