Tan0009800 (gene) Snake gourd v1

Overview
NameTan0009800
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPlant transposase
LocationLG06: 67551086 .. 67551514 (-)
RNA-Seq ExpressionTan0009800
SyntenyTan0009800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTCACCACCAACTGGAAGAGGTAGTTGGTCAAAAAGAAAACTCATCTATGTCTCACCTTGATGAAGATAGATCACATTTTTCTAATGATGTCAATATTGAAAGATCTCCTATGACTGCCCACAATCAAAACTTTTCACTCAATCCTAAGTATAAGGCAGTTACACATAATCCAATCCCAATCCCTACATTAGACTCCCCTGCTACTCGAACAAGATCAACACTTCTTAGGCAAGTAGCAACCTCTAATGGAAGCAATCTTGAAAATGAAGATCATACCATCGGTGAACACCCAACTGACACAACAGTACTACCAAAACGAACAAGAGGTCTTACTAAGATGAAGATAATAGCTGTTGATAACCAATCTAGAGTGGACCTAATTTTTAATGAGATGGGAAACCCATTGGGGATTCATCTATAG

mRNA sequence

ATGTCGCTTCACCACCAACTGGAAGAGGTAGTTGGTCAAAAAGAAAACTCATCTATGTCTCACCTTGATGAAGATAGATCACATTTTTCTAATGATGTCAATATTGAAAGATCTCCTATGACTGCCCACAATCAAAACTTTTCACTCAATCCTAAGTATAAGGCAGTTACACATAATCCAATCCCAATCCCTACATTAGACTCCCCTGCTACTCGAACAAGATCAACACTTCTTAGGCAAGTAGCAACCTCTAATGGAAGCAATCTTGAAAATGAAGATCATACCATCGGTGAACACCCAACTGACACAACAGTACTACCAAAACGAACAAGAGGTCTTACTAAGATGAAGATAATAGCTGTTGATAACCAATCTAGAGTGGACCTAATTTTTAATGAGATGGGAAACCCATTGGGGATTCATCTATAG

Coding sequence (CDS)

ATGTCGCTTCACCACCAACTGGAAGAGGTAGTTGGTCAAAAAGAAAACTCATCTATGTCTCACCTTGATGAAGATAGATCACATTTTTCTAATGATGTCAATATTGAAAGATCTCCTATGACTGCCCACAATCAAAACTTTTCACTCAATCCTAAGTATAAGGCAGTTACACATAATCCAATCCCAATCCCTACATTAGACTCCCCTGCTACTCGAACAAGATCAACACTTCTTAGGCAAGTAGCAACCTCTAATGGAAGCAATCTTGAAAATGAAGATCATACCATCGGTGAACACCCAACTGACACAACAGTACTACCAAAACGAACAAGAGGTCTTACTAAGATGAAGATAATAGCTGTTGATAACCAATCTAGAGTGGACCTAATTTTTAATGAGATGGGAAACCCATTGGGGATTCATCTATAG

Protein sequence

MSLHHQLEEVVGQKENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRTRSTLLRQVATSNGSNLENEDHTIGEHPTDTTVLPKRTRGLTKMKIIAVDNQSRVDLIFNEMGNPLGIHL
Homology
BLAST of Tan0009800 vs. NCBI nr
Match: TYK13531.1 (putative TNP1-like transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15
Identity = 60/141 (42.55%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K  S+   L  D     N+ N+E SP+  H    S  P YK V  NPI    LDS A RT
Sbjct: 341 KRRSTRRKLIADSFLLPNEENMESSPIDVHPNTLSPKPSYKIVEGNPI----LDSSAART 400

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  + RQ  TSN +  E               EDH + E P  +T  L K+TRG TKMK 
Sbjct: 401 RLAIRRQTTTSNVNGFEEPPLETITLPNEKAVEDHVVDEEPPFETMTLRKKTRGPTKMKT 460

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           IAV+ QSRVD++FNE G P+G
Sbjct: 461 IAVEKQSRVDIVFNEYGQPIG 477

BLAST of Tan0009800 vs. NCBI nr
Match: KAA0056210.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-15
Identity = 60/141 (42.55%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K+ S+   L  D     N+ N+E SP+  H    S  P  K V  NPI    LDSPA RT
Sbjct: 301 KKRSTRRKLIGDSLLLPNEENMESSPIDVHPNTLSSKPSDKIVEGNPI----LDSPAART 360

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  + RQ  TSN +  E               EDH + E P  +T  L K+TRG TKMK 
Sbjct: 361 RLAIRRQATTSNVNGFEEPQLETTTLPNEKAVEDHVVDEEPPFETMTLRKKTRGPTKMKT 420

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           IAV+ QSRVD++FNE G P+G
Sbjct: 421 IAVEKQSRVDIVFNEYGQPIG 437

BLAST of Tan0009800 vs. NCBI nr
Match: KAA0058414.1 (putative TNP1-like transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-15
Identity = 60/141 (42.55%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K  S+   L  D     N+ N+E SP+  H    S  P  K V  NPI    LDSPA RT
Sbjct: 265 KRRSTRRKLIADSLLLPNEENMESSPIDVHPNTLSPKPSDKIVEGNPI----LDSPAART 324

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  + RQ  TSN +  E               EDH + E P  +T  L K+TRG TKMK 
Sbjct: 325 RLAIRRQATTSNMNGFEEPPLETTTLPNEKAVEDHVVDEEPPFETMTLRKKTRGPTKMKT 384

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           IAV+ QSRVD++FNE G P+G
Sbjct: 385 IAVEKQSRVDIVFNEYGQPIG 401

BLAST of Tan0009800 vs. NCBI nr
Match: KAA0041468.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-15
Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 34  NIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRTRSTLLRQVATSNGSNLEN-- 93
           ++E SP+  H    S  P  K V  NPI    LDSPATRTR  + RQ  TSN +  E   
Sbjct: 4   HMESSPIDVHPNTLSPKPSDKIVEGNPI----LDSPATRTRLAIRRQATTSNVNGFEEPP 63

Query: 94  ------------EDHTIGEHPT-DTTVLPKRTRGLTKMKIIAVDNQSRVDLIFNEMGNPL 140
                       EDH + E P  +T +L K+TRGLTKMK IAV+ QSRVD++F E G P+
Sbjct: 64  LETTTLPNEKAVEDHVVDEEPPFETMILRKKTRGLTKMKTIAVEKQSRVDIVFKEYGQPI 120

BLAST of Tan0009800 vs. NCBI nr
Match: KAA0036852.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 9.6e-15
Identity = 59/141 (41.84%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K +S+   L  D     N+ N+E SP+  H    S  P  K V  NPI    LDSPA RT
Sbjct: 295 KRSSTRRKLIVDSLRLPNEENMESSPIDVHPNTLSPKPSDKIVEGNPI----LDSPAART 354

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  +  Q  TSN +  E               EDH I E P  +T +L K+TRG TKMK 
Sbjct: 355 RLAIRWQATTSNVNGFEEPPLETTTLPNEKAVEDHVIDEEPPFETMILQKKTRGPTKMKT 414

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           I+V+ QSRVD++FNE G P+G
Sbjct: 415 ISVEKQSRVDIVFNEYGQPIG 431

BLAST of Tan0009800 vs. ExPASy TrEMBL
Match: A0A5D3CNY4 (Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00040 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 60/141 (42.55%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K  S+   L  D     N+ N+E SP+  H    S  P YK V  NPI    LDS A RT
Sbjct: 341 KRRSTRRKLIADSFLLPNEENMESSPIDVHPNTLSPKPSYKIVEGNPI----LDSSAART 400

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  + RQ  TSN +  E               EDH + E P  +T  L K+TRG TKMK 
Sbjct: 401 RLAIRRQTTTSNVNGFEEPPLETITLPNEKAVEDHVVDEEPPFETMTLRKKTRGPTKMKT 460

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           IAV+ QSRVD++FNE G P+G
Sbjct: 461 IAVEKQSRVDIVFNEYGQPIG 477

BLAST of Tan0009800 vs. ExPASy TrEMBL
Match: A0A5A7UM47 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00020 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 60/141 (42.55%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K+ S+   L  D     N+ N+E SP+  H    S  P  K V  NPI    LDSPA RT
Sbjct: 301 KKRSTRRKLIGDSLLLPNEENMESSPIDVHPNTLSSKPSDKIVEGNPI----LDSPAART 360

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  + RQ  TSN +  E               EDH + E P  +T  L K+TRG TKMK 
Sbjct: 361 RLAIRRQATTSNVNGFEEPQLETTTLPNEKAVEDHVVDEEPPFETMTLRKKTRGPTKMKT 420

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           IAV+ QSRVD++FNE G P+G
Sbjct: 421 IAVEKQSRVDIVFNEYGQPIG 437

BLAST of Tan0009800 vs. ExPASy TrEMBL
Match: A0A5A7UTC4 (Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G001270 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 60/141 (42.55%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K  S+   L  D     N+ N+E SP+  H    S  P  K V  NPI    LDSPA RT
Sbjct: 265 KRRSTRRKLIADSLLLPNEENMESSPIDVHPNTLSPKPSDKIVEGNPI----LDSPAART 324

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  + RQ  TSN +  E               EDH + E P  +T  L K+TRG TKMK 
Sbjct: 325 RLAIRRQATTSNMNGFEEPPLETTTLPNEKAVEDHVVDEEPPFETMTLRKKTRGPTKMKT 384

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           IAV+ QSRVD++FNE G P+G
Sbjct: 385 IAVEKQSRVDIVFNEYGQPIG 401

BLAST of Tan0009800 vs. ExPASy TrEMBL
Match: A0A5A7TEX1 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00480 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 34  NIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRTRSTLLRQVATSNGSNLEN-- 93
           ++E SP+  H    S  P  K V  NPI    LDSPATRTR  + RQ  TSN +  E   
Sbjct: 4   HMESSPIDVHPNTLSPKPSDKIVEGNPI----LDSPATRTRLAIRRQATTSNVNGFEEPP 63

Query: 94  ------------EDHTIGEHPT-DTTVLPKRTRGLTKMKIIAVDNQSRVDLIFNEMGNPL 140
                       EDH + E P  +T +L K+TRGLTKMK IAV+ QSRVD++F E G P+
Sbjct: 64  LETTTLPNEKAVEDHVVDEEPPFETMILRKKTRGLTKMKTIAVEKQSRVDIVFKEYGQPI 120

BLAST of Tan0009800 vs. ExPASy TrEMBL
Match: A0A5A7T097 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001590 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 59/141 (41.84%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 14  KENSSMSHLDEDRSHFSNDVNIERSPMTAHNQNFSLNPKYKAVTHNPIPIPTLDSPATRT 73
           K +S+   L  D     N+ N+E SP+  H    S  P  K V  NPI    LDSPA RT
Sbjct: 295 KRSSTRRKLIVDSLRLPNEENMESSPIDVHPNTLSPKPSDKIVEGNPI----LDSPAART 354

Query: 74  RSTLLRQVATSNGSNLEN--------------EDHTIGEHPT-DTTVLPKRTRGLTKMKI 133
           R  +  Q  TSN +  E               EDH I E P  +T +L K+TRG TKMK 
Sbjct: 355 RLAIRWQATTSNVNGFEEPPLETTTLPNEKAVEDHVIDEEPPFETMILQKKTRGPTKMKT 414

Query: 134 IAVDNQSRVDLIFNEMGNPLG 140
           I+V+ QSRVD++FNE G P+G
Sbjct: 415 ISVEKQSRVDIVFNEYGQPIG 431

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK13531.12.5e-1542.55putative TNP1-like transposon protein [Cucumis melo var. makuwa][more]
KAA0056210.13.3e-1542.55integrase [Cucumis melo var. makuwa][more]
KAA0058414.14.3e-1542.55putative TNP1-like transposon protein [Cucumis melo var. makuwa][more]
KAA0041468.15.6e-1545.45Plant transposase [Cucumis melo var. makuwa][more]
KAA0036852.19.6e-1541.84Plant transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3CNY41.2e-1542.55Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UM471.6e-1542.55Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00020 PE=4 ... [more]
A0A5A7UTC42.1e-1542.55Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TEX12.7e-1545.45Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G0048... [more]
A0A5A7T0974.6e-1541.84Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0009800.1Tan0009800.1mRNA