Tan0009777 (gene) Snake gourd v1

Overview
NameTan0009777
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranslation initiation factor IF-1, chloroplastic
LocationLG01: 109149640 .. 109152545 (+)
RNA-Seq ExpressionTan0009777
SyntenyTan0009777
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCCTTCTCCATCCGAGTTCCTTTCGCTCACTCTCTTCCTCAGCCAAAATCCAGAAAACTGAAGGTGGTGCAAAAATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACCCCATTTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCACCAATCCGTCGTCTCAATACCTTTTCCGAGCTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGCGAGCTTCGCTCTCATGGCAAAGTCTCCAAAAAGCGACAGCTCGGAGCAGAAATGGAGCCACGAAGGCTCGGTCATCGAGTCTCTTCCCAACGGGATGTTCAGAGTTCGATTGGATAATGAGGACCTCATTCTTGGCTACATATCGGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACCAAAGGCCGTATTGTCTATAGACTTCGAAGTAGTACTAAGGATTCATCTTCGTGAATTATAGTTTTGGATTATTTTATTTTGGAATGTGTTGATTTTGTGGAATAGTGTACATTGATCCCTCTTTTTTTGATCTTTTTTAGAATGTAAGATGACAAACATGTATTTTACTTGAGCTTTTTGAATCTCTAGGAGTTTCAGAGCTCGTGGATTTATGCCTTGTCTTGTAATTGTTTTGAACTAAAGAAAGAGGAGAATTTAGCTTTTCCAGTTTATTCTTGTGAGATGCTTTTAGTGTTCCTTTTCTACTAAGGGAATGTGAAAAAACTTGCCTATTTGCAGAAATTAAATAGCTCGTGTGTATCTAGAATGGAATTAAATACTCTTTAATGTAGTTCCTTGATTAATACTGGGTTCCTTCCCTGCAATTCAAGTAATTTTTGAAAATAACAACAATTGAGTGAATTGAAGGTTCTGGATTGAACTTATCAAATTGTGATATGATATCTTATTCCAAAAAAAAAAAAAAAAATCTTATCCAACCAATTGTGATATGATATTCAATAAGGAACCAAAGTCAGGGGCTTTGAAGATGATGATTGAGAAGAAAAAGCCATATTCTTTTCAATTTGCTTCAAATGGTCTGCAGTTTTGGGGCAGGTGTGGGTGCCCTCGGGTGTAGGAGAGCAATACTCCAATACCTGGTTATCAAAAGAAAAAGTCTGCAGTTTTGAACTAAGCACTATCTGCTTTAAAAGCCTAATCTTCCATTCTATTCAGAGATTTGGTTTTGCTGGTATCTTGGGAGATGTTGAGTCTGATGGATATATGCATAGTCAGCTCATCTCAGGGAATGATTGTATGATTTGAAGTTTGTATATGCATTATGCAGTGTAAGTTAATGAGCTAGTTTCGATGCGAGTTTCTGCTGATGTCAAATTGGACCGACCTTTGCGAACATCAGTAGTTTTGCCGAATTTTCTTCAAGGTTCATTGTAGAACTAGTCTCAGGCTTTGTTTTGTTGCTATGCCTGTTTTAGGTGAAAAAACAACCATAAAGAAGCTGTTATTTTGCACATTCATTCTCGAAACCCCAAAGCTCAAAATTTTGAATTAGCAAGTCCTTGTCTACCTCAACCGTTTATCTTTTCCCCTTTGCCTCTAAGTATGATTTGTAGTTAATCTCTCTGACCGCATGCTGGGAGGAATAAGGGCTATTTGGAAGCTGTCTTGTAGCTTTTTGCTAACATAGTTGGGAACTAGGGGGAAGTGTTTCTTCGAAAATCACAAAGCCACAGGTCTGTGAACAGTGATTGATGGTCATGAATGTATTGGCACTTTGTATTAACCATAATCTTTCTAGTGCGAGAGCTCAAACCGGTTAAGGCTTATACACTCGACCAAAAGGTCAGAGGTTTGAATTTCTCCACCTCAACATGTTATTGAACTAAAATATATATATATAGAGGGAGAGGACTTAAATTAGACGTATAATCTCTAAACTTAAGACTGTCTAATAGGTTCTTGAACTTTCGTTTTTTTGTCTAATATATCTTGACATATTTGAAACTTTTAGGGGTTGTTTGGGACGCTTAGTGGGTTATAATAACAGGGGGTTATAATAGTATGTGAGTTATTATAGTCTGTGAAACATATAATATTATTTAAAATGCAAAGTAGTATAGTCTGGGGTTATCTGTGTTTGGAGTGCAGAGTATTTCACAAGTTATTATAACACGGGTTATAATAGCCAGTGGGCCAAACAGGCCCTTAAAAATGAATTGATTTATTGGATATAAAATTGAATTTTATATCTAATGGGACCCTAAACTTTCAAGTTTATATTAAGTAGGTCCTTGAATTTTAAAAAACGTCGAATAGATTAAGGACTTATTAGACACAATTAAAAATTCAAAGACTTAATGTACATAAAATTGAAAGTTTAATGACCAATTGAGCATGAAATTGAAAGTTTAAGGACTTATTGGACAGTTATTAAAATTCTATGAGTTTCTTAAAGATTACCTATTTGTGATGCTAGATGGGGCTATTTACTAGTGTAGCATAAGGGCTTACCATTTTTTTTTTAATGAGATGATGAAAATGCAGGATTTAATTAATTCTTTTGAGTGCATTATTCTCAAATTTTAGATGCTCATACTCAAGTTCTTTGATTCGTCCCCAATAGAGCTCAAAAAGAATTATTGCAGAGAGGTGAATGTGATGCTCATGCCCTGTCCCACCTACTTTTATAGGAACATGAATGCGACCAAAATATGTCTTCAACAACTCATAATTCAGACCTACAGGTAATTAAGTTCAACAACTTTGCACCCAAAACACATATTTAATAACTCTCCAAACTACTTAATTTGTCATGCTAAACAATTTCAAGTTTAATAACTCATACTCTTTTTTCAACAAGAGCATAGCTCAACTGGCATCAAGTATTGG

mRNA sequence

ATCCCCTTCTCCATCCGAGTTCCTTTCGCTCACTCTCTTCCTCAGCCAAAATCCAGAAAACTGAAGGTGGTGCAAAAATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACCCCATTTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCACCAATCCGTCGTCTCAATACCTTTTCCGAGCTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGCGAGCTTCGCTCTCATGGCAAAGTCTCCAAAAAGCGACAGCTCGGAGCAGAAATGGAGCCACGAAGGCTCGGTCATCGAGTCTCTTCCCAACGGGATGTTCAGAGTTCGATTGGATAATGAGGACCTCATTCTTGGCTACATATCGGGAACATGAATGCGACCAAAATATGTCTTCAACAACTCATAATTCAGACCTACAGGTAATTAAGTTCAACAACTTTGCACCCAAAACACATATTTAATAACTCTCCAAACTACTTAATTTGTCATGCTAAACAATTTCAAGTTTAATAACTCATACTCTTTTTTCAACAAGAGCATAGCTCAACTGGCATCAAGTATTGG

Coding sequence (CDS)

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACCCCATTTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCACCAATCCGTCGTCTCAATACCTTTTCCGAGCTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGCGAGCTTCGCTCTCATGGCAAAGTCTCCAAAAAGCGACAGCTCGGAGCAGAAATGGAGCCACGAAGGCTCGGTCATCGAGTCTCTTCCCAACGGGATGTTCAGAGTTCGATTGGATAATGAGGACCTCATTCTTGGCTACATATCGGGAACATGA

Protein sequence

MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISGT
Homology
[Close]
BLAST of Tan0009777 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-13
Identity = 51/98 (52.04%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 7   LQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSS-QFLHNPSHGPASFALMAKS-PKSD 66
           L  P+L P +    T   P+      +   PF  +  FL  P   PA+ AL A S  K D
Sbjct: 5   LHTPILHPRYCHHPT---PSCTQFSPLALPPFHRTLSFLAPPPLLPAAPALSAASAAKPD 64

Query: 67  -SSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
            S EQKW HEG ++ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 65  KSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISG 99

[Close]
BLAST of Tan0009777 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 67  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           EQKW+HEG + ESLPNGMFRVRLDNEDLILGY+SG
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSG 37

[Close]
BLAST of Tan0009777 vs. ExPASy Swiss-Prot
Match: Q95GN3 (Translation initiation factor IF-1, chloroplastic OS=Cercidiphyllum japonicum OX=13413 GN=infA PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 67  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           EQKW HEG + ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 3   EQKWVHEGLITESLPNGMFRVRLDNEDLILGYISG 37

[Close]
BLAST of Tan0009777 vs. ExPASy Swiss-Prot
Match: P69041 (Translation initiation factor IF-1, chloroplastic OS=Antirrhinum majus OX=4151 GN=infA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 67  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SG
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSG 37

[Close]
BLAST of Tan0009777 vs. ExPASy Swiss-Prot
Match: A6MM71 (Translation initiation factor IF-1, chloroplastic OS=Buxus microphylla OX=153571 GN=infA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 67  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SG
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSG 37

[Close]
BLAST of Tan0009777 vs. NCBI nr
Match: XP_022940969.1 (translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_023525132.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7037405.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 7.3e-41
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ   RPPST LFPAIKSH SVVSIPFPSSQFLHNPSHGP SF  MAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYISG
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 9.6e-41
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSST LLQFPLLQ HFRPPSTL FPA+KSH SVVSI FP++QFLHNPSH  A F LMAKS
Sbjct: 1   MSSTILLQFPLLQSHFRPPSTLFFPAVKSHLSVVSITFPTTQFLHNPSHASAGFVLMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PK+D+SEQKWSHEGSV+ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 61  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. NCBI nr
Match: XP_008452461.1 (PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. NCBI nr
Match: KAG6607876.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ   RPPST LFPAIKSH SVVSIPFPSSQFLHNPSHG ASF  MAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHLSVVSIPFPSSQFLHNPSHGSASFVPMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYISG
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.5e-41
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ   RPPST LFPAIKSH SVVSIPFPSSQFLHNPSHGP SF  MAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYISG
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.0e-41
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. ExPASy TrEMBL
Match: A0A1S3BT96 (translation initiation factor IF-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493487 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.0e-41
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. ExPASy TrEMBL
Match: A0A6J1IW62 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480474 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.9e-40
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLLQFPLLQ   RPP T LFP  KSH SVVSIPFPSSQFLHNPSHGPASFA MAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKS 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYISG
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISG 101

[Close]
BLAST of Tan0009777 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.7e-40
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 1   MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKS 60
           MSSTNLL+FPLL  H RPPSTL FPAIKSH SVVSI FP+SQFL NPSHGPA FALMAK 
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           PKSDS+EQKWS+EGS++ESLPNGMFRVRLDNEDLILGYI G
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICG 101

[Close]
BLAST of Tan0009777 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 39/93 (41.94%), Postives = 48/93 (51.61%), Query Frame = 0 

Query: 11  LLQPHFRPPSTLLFPAIK--SHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQ 70
           LL   FR  + +L P I   +  SVV+I         +   G A+ +  AK P+      
Sbjct: 13  LLPCQFRFTNGVLIPQINYVASNSVVNIRPMIRCQRASGGRGGANRSKPAK-PQVKEGSN 72

Query: 71  KWSHEGSVIESLPNGMFRVRLDNEDLILGYISG 102
           K   EG V ESLPNGMFRV L+N D ILGYI G
Sbjct: 73  KTVIEGLVTESLPNGMFRVDLENGDNILGYICG 104

The following BLAST results are available for this feature:
BLAST of Tan0009777 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94KR73.9e-1352.04Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA... [more]
A0A3701.7e-1185.71Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=... [more]
Q95GN32.8e-1188.57Translation initiation factor IF-1, chloroplastic OS=Cercidiphyllum japonicum OX... [more]
P690413.7e-1185.71Translation initiation factor IF-1, chloroplastic OS=Antirrhinum majus OX=4151 G... [more]
A6MM713.7e-1185.71Translation initiation factor IF-1, chloroplastic OS=Buxus microphylla OX=153571... [more]
BLAST of Tan0009777 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940969.17.3e-4189.11translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_... [more]
XP_038899010.19.6e-4185.15translation initiation factor IF-1, chloroplastic [Benincasa hispida][more]
XP_008452461.11.2e-4086.14PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo][more]
KAA0064332.11.2e-4086.14translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl... [more]
KAG6607876.12.1e-4089.11Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper... [more]
BLAST of Tan0009777 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FLU63.5e-4189.11translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=... [more]
A0A5A7V7J36.0e-4186.14Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3BT966.0e-4186.14translation initiation factor IF-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1IW623.9e-4088.12translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=36... [more]
A0A6J1IP008.7e-4084.16uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947... [more]
BLAST of Tan0009777 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G11175.11.8e-0541.94Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 61..105
e-value: 4.1E-9
score: 37.9
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 46..100
IPR004368Translation initiation factor IF-1PANTHERPTHR33370TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 46..100
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 67..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0009777.1Tan0009777.1mRNA
Tan0009777.2Tan0009777.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003743 translation initiation factor activity