Tan0009676 (gene) Snake gourd v1

Overview


Name	Tan0009676
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 63217930 .. 63218289 (+)
RNA-Seq Expression	Tan0009676
Synteny	Tan0009676

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAGTGGGGACAATAATGGTTGTTCTGATTTTGACGATGAGCGCAAGGAGCTACAAGGCTGCTTCTCTAAGTCCTTACAATTTCGGCAATGAGACCGCGGCATCCATGTGTTGCGATGGCCGCACCGAAGAGTACCTTGTCGGAGAAGACAACATTGAGTCAAGACTTTCATTCCCTCAGCGTAAATACCTTAGTCCTGGGAGCTCGAACAAGGTTGTACCTACATGTGGTCGGAATCGAGACCCGAAGAGATATGACGCGACCTGTACTGGCAATCGTCCCAACCCGCCCCCAAACGGAAAGCGAGATAATTGTGATGCAAACAGTTATCACCGCTACTGTAATGGAAAATAG

mRNA sequence

ATGGCGGCAGTGGGGACAATAATGGTTGTTCTGATTTTGACGATGAGCGCAAGGAGCTACAAGGCTGCTTCTCTAAGTCCTTACAATTTCGGCAATGAGACCGCGGCATCCATGTGTTGCGATGGCCGCACCGAAGAGTACCTTGTCGGAGAAGACAACATTGAGTCAAGACTTTCATTCCCTCAGCGTAAATACCTTAGTCCTGGGAGCTCGAACAAGGTTGTACCTACATGTGGTCGGAATCGAGACCCGAAGAGATATGACGCGACCTGTACTGGCAATCGTCCCAACCCGCCCCCAAACGGAAAGCGAGATAATTGTGATGCAAACAGTTATCACCGCTACTGTAATGGAAAATAG

Coding sequence (CDS)

ATGGCGGCAGTGGGGACAATAATGGTTGTTCTGATTTTGACGATGAGCGCAAGGAGCTACAAGGCTGCTTCTCTAAGTCCTTACAATTTCGGCAATGAGACCGCGGCATCCATGTGTTGCGATGGCCGCACCGAAGAGTACCTTGTCGGAGAAGACAACATTGAGTCAAGACTTTCATTCCCTCAGCGTAAATACCTTAGTCCTGGGAGCTCGAACAAGGTTGTACCTACATGTGGTCGGAATCGAGACCCGAAGAGATATGACGCGACCTGTACTGGCAATCGTCCCAACCCGCCCCCAAACGGAAAGCGAGATAATTGTGATGCAAACAGTTATCACCGCTACTGTAATGGAAAATAG

Protein sequence

MAAVGTIMVVLILTMSARSYKAASLSPYNFGNETAASMCCDGRTEEYLVGEDNIESRLSFPQRKYLSPGSSNKVVPTCGRNRDPKRYDATCTGNRPNPPPNGKRDNCDANSYHRYCNGK

Homology

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BLAST of Tan0009676 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-04
Identity = 46/117 (39.32%), Postives = 55/117 (47.01%), Query Frame = 0


Query: 8   MVVLILTMSARSYKAASLSPYNFGNET---AASMCCDGRTEEYLVGEDNIESRLSFPQ-- 67
           M V IL +S      AS +P ++GN T   AASM CDGR EE +  E   +S  +FP   
Sbjct: 16  MGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVTREG--DSASAFPSLQ 75

Query: 68  ---RKYLSPGSSNKVVPTCGRNRDPKRYDATCTGNRPNPPPNGKRDNCDANSYHRYC 117
              RKY+SP S N     C R   P  Y +     R NP PN    NC    Y R C
Sbjct: 76  TSTRKYISPSSVNSNKAVCER---PDEYRSCFNPRRSNPNPN----NC--GRYTRVC 121

The following BLAST results are available for this feature:

BLAST of Tan0009676 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009676 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607071.1	4.9e-04	39.32	hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0009676 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0009676 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009676.1	Tan0009676.1	mRNA