Tan0009614 (gene) Snake gourd v1

Overview


Name	Tan0009614
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG03: 61499766 .. 61500017 (-)
RNA-Seq Expression	Tan0009614
Synteny	Tan0009614

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTCATGATGGGTGATGTGGACCCTGACGAAAGGATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATCATCCAAGAGAAGCAACCGCCTCAACTAGCTTCAGTTGCTTGTTTATCCGTCCAATAA

mRNA sequence

ATGTCGGTCATGATGGGTGATGTGGACCCTGACGAAAGGATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATCATCCAAGAGAAGCAACCGCCTCAACTAGCTTCAGTTGCTTGTTTATCCGTCCAATAA

Coding sequence (CDS)

ATGTCGGTCATGATGGGTGATGTGGACCCTGACGAAAGGATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATCATCCAAGAGAAGCAACCGCCTCAACTAGCTTCAGTTGCTTGTTTATCCGTCCAATAA

Protein sequence

MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLASVACLSVQ

Homology

[Close]

BLAST of Tan0009614 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Tan0009614 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Tan0009614 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Tan0009614 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Tan0009614 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Tan0009614 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM D+ P+  MAEMERKIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  D
Sbjct: 82  MSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVKATD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 142 KGKNVVQENQPQQQSVSVASLSVQ 165

[Close]

BLAST of Tan0009614 vs. ExPASy TrEMBL
Match: A0A5A7T9K9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00280 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-17
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM D+  +  MAEMERKIN LMKA EERD EI  L+ Q++ +ETTESSQTP V+  D
Sbjct: 35  MSVMMADITAEAAMAEMERKINFLMKAAEERDHEITALREQMRTRETTESSQTPVVKATD 94

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 95  KGKNVVQENQPQQQSVSVASLSVQ 118

[Close]

BLAST of Tan0009614 vs. ExPASy TrEMBL
Match: A0A5A7TYE9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00410 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM D+  +  MAEMERKIN LMK VEERD EI  L+ Q++ +ET ESSQTP V+  D
Sbjct: 59  MSVMMADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATD 118

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LSVQ
Sbjct: 119 KGKNVVQENQPQQQSVSVASLSVQ 142

[Close]

BLAST of Tan0009614 vs. ExPASy TrEMBL
Match: A0A5A7VDN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00050 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM D+  +  MAEMERKIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  D
Sbjct: 35  MSVMMADITAEAAMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATD 94

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++Q+ QP Q + SVA LSVQ
Sbjct: 95  KGKNVVQKNQPQQQSVSVASLSVQ 118

[Close]

BLAST of Tan0009614 vs. ExPASy TrEMBL
Match: A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNND 60
           MSVMM D+  +  MAEME+KIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  D
Sbjct: 82  MSVMMADITVEAAMAEMEKKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATD 141

Query: 61  KGKNIIQEKQPPQLA-SVACLSVQ 84
           KGKN++QE QP Q + SVA LS+Q
Sbjct: 142 KGKNVVQENQPQQQSISVASLSIQ 165

The following BLAST results are available for this feature:

BLAST of Tan0009614 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009614 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	2.1e-17	67.86	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.1e-17	67.86	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	2.1e-17	67.86	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	2.1e-17	67.86	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	2.1e-17	67.86	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Tan0009614 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	1.3e-17	65.48	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T9K9	5.0e-17	64.29	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TYE9	1.9e-16	63.10	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VDN4	1.9e-16	63.10	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UF60	2.5e-16	61.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0009614 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009614.1	Tan0009614.1	mRNA