Tan0009580 (gene) Snake gourd v1

Overview
NameTan0009580
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptioncold shock protein 2-like
LocationLG11: 11313319 .. 11314510 (+)
RNA-Seq ExpressionTan0009580
SyntenyTan0009580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAATCAATACTCAAAAAACTCAACTGTCCGCCATTGATTCCTTCTCTGAATGACAGGCTGCTTAATCAACTAAATATACATTGCTCGAAACCTTTCGATTCTTTGTTCTCCTTTTTCTTTTTCCTTCTTGTAGATTTTTTTTTCTCTTTTCCATGGCCGAGGTGAAGAGATCGAGCGGCACTGTGAGGTGGTTCAGTGCGCAGAAGGGATTTGGTTTCATCGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACGTCGATTCGCTCCGAAGGATTTCGTACTCTTTTTGATGGTCAGGCTGTTGAGTATGTTATCGATTACGACGAAGATCAACGCCCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGGGTTTGGAGGTGCCCGTGGGGGTGGGCGAGGTAGAGGCGGCGGTTATGGACGGTTCAGCGGAGGAGGTTATGGTAGCGGCGGCGGTAGCGGCCGTGGATTTGGCAGAGGAGGGCGGTACGACGGTCCAAGCGTCGCCTTCGGCGGTGGCGGTGCTGGTCGTGGAGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGAGGAAACGGCGGTGCGCCTCCCGGCCGTGGAGGAGGGGGTCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGTAGTGGTGGTGGTGGTGGCGGTGGCGGTGGTTGTTATAATTGCGGAGATACAGGACATTTTGCTAGGGATTGTCAAAATGAAAGCAAATGATGAAGAATGCGGGTCTTCCTTTAAGCGGTATTTATTTATACTTTTTTTTTTTTTTTTTCTGAAGATTAATTTGGTTGGGGTGTTAATTTTTTGGTGCGAATTCTGGGATTTATAAGTGTGTCGGTGACTGCAAGTCTGCAATTGAGGGCACGAGGATCCGGGACAATAAATCACAAGGCTTCTTCAATTGATCATTGTTTCTCCTTTTGGGTGTTCGATAATTTGTTGATGAATGGAATCAATTGTTTGTATATGCTATATACCTTACTTCCATTTCTAATCCATTCTTCTTTAATTGTTGTGATACTCTTAACATGTTATATAATATCATATATGTAATCCCGTCAAGAGTATATGTTCATACCATTTTGTATTTCTTATCCTTCATCTTTGTCAATTACTGTAATCTCTCTCTTTTTT

mRNA sequence

CTGAATCAATACTCAAAAAACTCAACTGTCCGCCATTGATTCCTTCTCTGAATGACAGGCTGCTTAATCAACTAAATATACATTGCTCGAAACCTTTCGATTCTTTGTTCTCCTTTTTCTTTTTCCTTCTTGTAGATTTTTTTTTCTCTTTTCCATGGCCGAGGTGAAGAGATCGAGCGGCACTGTGAGGTGGTTCAGTGCGCAGAAGGGATTTGGTTTCATCGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACGTCGATTCGCTCCGAAGGATTTCGTACTCTTTTTGATGGTCAGGCTGTTGAGTATGTTATCGATTACGACGAAGATCAACGCCCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGGGTTTGGAGGTGCCCGTGGGGGTGGGCGAGGTAGAGGCGGCGGTTATGGACGGTTCAGCGGAGGAGGTTATGGTAGCGGCGGCGGTAGCGGCCGTGGATTTGGCAGAGGAGGGCGGTACGACGGTCCAAGCGTCGCCTTCGGCGGTGGCGGTGCTGGTCGTGGAGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGAGGAAACGGCGGTGCGCCTCCCGGCCGTGGAGGAGGGGGTCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGTAGTGGTGGTGGTGGTGGCGGTGGCGGTGGTTGTTATAATTGCGGAGATACAGGACATTTTGCTAGGGATTGTCAAAATGAAAGCAAATGATGAAGAATGCGGGTCTTCCTTTAAGCGGTATTTATTTATACTTTTTTTTTTTTTTTTTCTGAAGATTAATTTGGTTGGGGTGTTAATTTTTTGGTGCGAATTCTGGGATTTATAAGTGTGTCGGTGACTGCAAGTCTGCAATTGAGGGCACGAGGATCCGGGACAATAAATCACAAGGCTTCTTCAATTGATCATTGTTTCTCCTTTTGGGTGTTCGATAATTTGTTGATGAATGGAATCAATTGTTTGTATATGCTATATACCTTACTTCCATTTCTAATCCATTCTTCTTTAATTGTTGTGATACTCTTAACATGTTATATAATATCATATATGTAATCCCGTCAAGAGTATATGTTCATACCATTTTGTATTTCTTATCCTTCATCTTTGTCAATTACTGTAATCTCTCTCTTTTTT

Coding sequence (CDS)

ATGGCCGAGGTGAAGAGATCGAGCGGCACTGTGAGGTGGTTCAGTGCGCAGAAGGGATTTGGTTTCATCGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACGTCGATTCGCTCCGAAGGATTTCGTACTCTTTTTGATGGTCAGGCTGTTGAGTATGTTATCGATTACGACGAAGATCAACGCCCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGGGTTTGGAGGTGCCCGTGGGGGTGGGCGAGGTAGAGGCGGCGGTTATGGACGGTTCAGCGGAGGAGGTTATGGTAGCGGCGGCGGTAGCGGCCGTGGATTTGGCAGAGGAGGGCGGTACGACGGTCCAAGCGTCGCCTTCGGCGGTGGCGGTGCTGGTCGTGGAGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGAGGAAACGGCGGTGCGCCTCCCGGCCGTGGAGGAGGGGGTCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGTAGTGGTGGTGGTGGTGGCGGTGGCGGTGGTTGTTATAATTGCGGAGATACAGGACATTTTGCTAGGGATTGTCAAAATGAAAGCAAATGA

Protein sequence

MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYDGPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGGGGGGGGGCYNCGDTGHFARDCQNESK
Homology
[Close]
BLAST of Tan0009580 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-39
Identity = 115/199 (57.79%), Postives = 135/199 (67.84%), Query Frame = 0 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD GDDLFVHQ+SIRSEGFR+L   +AVE+ ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  PKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYDGPSVAF 124
           PKA+DV+    +   G + GG  G  GG+G   GGG GSGGG G   G GG Y       
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYG---GGGGGYG------ 128

Query: 125 GGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRG--GGGRGY-GGGRGYGGGSGGGG 184
           G GG GRGG +CY CG  GH+ARDC  G GG   G G  GGG GY GGG GYGGG  GGG
Sbjct: 129 GRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGG 188

Query: 185 GGGGGCYNCGDTGHFARDC 201
           GGGG CY+CG++GHFARDC
Sbjct: 189 GGGGSCYSCGESGHFARDC 198

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BLAST of Tan0009580 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-36
Identity = 112/217 (51.61%), Postives = 131/217 (60.37%), Query Frame = 0 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQR 64
           +R+ GTV+WFS QKGFGFI PDD G+DLFVHQ+ IRSEGFR+L +G+ VE+ ++   D R
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 65  PKAVDVT-------VIGRSSGFGGARGGGRGRGGGYGRFSGGGYG---------SGGGSG 124
            KAVDVT         GR  G GG   GG G GGG G + GGG G          G G G
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 125 RGFGRGGRYDGPSVAFGGGGAGRGGGE-----CYNCGRMGHLARDCYRGNGGAPPGRGGG 184
            G+G G RY G    +GGGG   GGG      C+ CG  GH ARDC +  GG     GGG
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGG-----GGG 186

Query: 185 GRGYGGGRGYGGGSGGGGGGGGGCYNCGDTGHFARDC 201
           GR       +GG  GGGGGGGGGCY CG+ GHFAR+C
Sbjct: 187 GR-------FGG--GGGGGGGGGCYKCGEDGHFAREC 209

[Close]
BLAST of Tan0009580 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 108/198 (54.55%), Postives = 126/198 (63.64%), Query Frame = 0 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRP 65
           R  GTV+WF  QKGFGFI P D GDDLFVHQ+SIRSEGFR+L   ++VE+ ++ D   RP
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGR-GGRYDGPSVAF 125
           KA++V      SG  GA   G   GGG    SGG  G GGG GRG GR GG Y G     
Sbjct: 74  KAIEV------SGPDGAPVQGNSGGGG---SSGGRGGFGGGGGRGGGRGGGSYGGGYGGR 133

Query: 126 GGGGAGRGGGE--CYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGGGGG 185
           G GG G GGG+  C+ CG  GH+AR+C +G GG   G GGG  G GGG       GGGGG
Sbjct: 134 GSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGG-------GGGGG 193

Query: 186 GGGGCYNCGDTGHFARDC 201
           GG  CY+CG++GHFARDC
Sbjct: 194 GGLSCYSCGESGHFARDC 195

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BLAST of Tan0009580 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.4e-23
Identity = 102/219 (46.58%), Postives = 118/219 (53.88%), Query Frame = 0 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRP 65
           RS G V WFS  KG+GFI PDD G++LFVHQ+SI S+GFR+L  G++VEY I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYG------SGGGSGRGFGRGGRYDG 125
           KA++VT  G  S         RG GG    F+ G  G       GG  G+ FG       
Sbjct: 70  KAIEVTAPGGGS-LNKKENSSRGSGGNC--FNCGEVGHMAKDCDGGSGGKSFG------- 129

Query: 126 PSVAFGGGGAGRGG-GECYNCGRMGHLARDCYRGNGGAPPGRGGGG-------------- 185
                GGGG   GG GECY CG +GH ARDC +  GG   G GGGG              
Sbjct: 130 -----GGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAK 189

Query: 186 --RGYGGGRGYGGGSGGGGGGGGGCYNCGDTGHFARDCQ 202
             RG  GG  YGGG GG G GG GCY CG  GHFARDC+
Sbjct: 190 DCRGGSGGNRYGGG-GGRGSGGDGCYMCGGVGHFARDCR 212

[Close]
BLAST of Tan0009580 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 96/217 (44.24%), Postives = 109/217 (50.23%), Query Frame = 0 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRP 65
           RS+G V WF+A KG+GFI PDD   +LFVHQ+SI SEG+R+L  G AVE+ I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVTVIGRSS--GFGGARGGGRGRGGGYGRFSGGGYGSG--GGSGRGFGRGGRYDGPS 125
           KAV+VT  G  S      +RG G  RGGG      G Y  G  G   +  G GG      
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGG----GSGCYNCGELGHISKDCGIGG------ 129

Query: 126 VAFGGGGA---GRGGGECYNCGRMGHLARDCYRGNGGAPPG--RGGGGRGYGGGR----- 185
              GGGG     RGG  CYNCG  GH ARDC     G   G  +GG    Y  G      
Sbjct: 130 ---GGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVA 189

Query: 186 --------GYGGGSGGGGGGGGGCYNCGDTGHFARDC 201
                   G G   G   GG  GCY CGD GHFARDC
Sbjct: 190 RDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

[Close]
BLAST of Tan0009580 vs. NCBI nr
Match: XP_022938383.1 (cold shock protein 2-like [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 3.8e-81
Identity = 181/207 (87.44%), Postives = 184/207 (88.89%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSG-GGYGSGGGSGRGFGR-GGRYD 120
           EDQR KAVDVTV GRSSG+GG RGG RGRGGGYGRF G GGYG     GRGFGR GGRYD
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYG-----GRGFGRGGGRYD 120

Query: 121 GPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSG 180
           GPS  FGGGG GRGGGECYNCGRMGHLARDCYRGNGGAPP R GGGRGYGGGRGYG   G
Sbjct: 121 GPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSR-GGGRGYGGGRGYG---G 180

Query: 181 GGGGGGGGCYNCGDTGHFARDCQNESK 206
           GGGGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGGGRGCYNCGDTGHFARDCQNESK 198

[Close]
BLAST of Tan0009580 vs. NCBI nr
Match: XP_023549669.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80
Identity = 179/206 (86.89%), Postives = 182/206 (88.35%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFSIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGR-GGRYDG 120
           EDQR KAVDVTV GRSSG+GG RGG RGRGGGYGRF  GG G  GG GRGFGR GGRYDG
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRF--GGEGGYGGGGRGFGRGGGRYDG 120

Query: 121 PSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGG 180
           PS  FGGGG GRGGGECYNCGRMGHLARDCYRGNGGAPP R GGGRGYGGGRGY     G
Sbjct: 121 PSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSR-GGGRGYGGGRGY-----G 180

Query: 181 GGGGGGGCYNCGDTGHFARDCQNESK 206
           GGGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGGRGCYNCGDTGHFARDCQNESK 198

[Close]
BLAST of Tan0009580 vs. NCBI nr
Match: XP_022993723.1 (cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016506.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80
Identity = 179/207 (86.47%), Postives = 182/207 (87.92%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSG-GGYGSGGGSGRGFGR-GGRYD 120
           EDQR KAVDVTV GRSSG+GG RGG RGRGGGYGRF G GGYG     GRGFGR GGRYD
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYG-----GRGFGRGGGRYD 120

Query: 121 GPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSG 180
           GPS  FGGGG GRGGGECYNCGRMGHLARDCYRGNGGAPP R GGGRGYGGGRGY     
Sbjct: 121 GPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSR-GGGRGYGGGRGY----- 180

Query: 181 GGGGGGGGCYNCGDTGHFARDCQNESK 206
           GGGGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGGGRGCYNCGDTGHFARDCQNESK 196

[Close]
BLAST of Tan0009580 vs. NCBI nr
Match: XP_038906549.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 5.2e-78
Identity = 168/205 (81.95%), Postives = 174/205 (84.88%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA +DLFVHQTSIRSEGFRTLFDGQAVE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASEDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYDGP 120
           EDQR KAVDVTVIGRS+G+GG RGGGRGRGG YGRF        GG GRGFGRGGRY+  
Sbjct: 61  EDQRSKAVDVTVIGRSTGYGGGRGGGRGRGGAYGRF--------GGGGRGFGRGGRYEDS 120

Query: 121 SVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGGG 180
           S  FGG G GRGGGECYNCGRMGHLARDCYRGNGGAPP     GRGYGGGRGYGGG+   
Sbjct: 121 SGGFGGRGGGRGGGECYNCGRMGHLARDCYRGNGGAPP-----GRGYGGGRGYGGGA--- 180

Query: 181 GGGGGGCYNCGDTGHFARDCQNESK 206
              GGGCYNCGDTGHFARDCQNESK
Sbjct: 181 ---GGGCYNCGDTGHFARDCQNESK 186

[Close]
BLAST of Tan0009580 vs. NCBI nr
Match: XP_022141389.1 (glycine-rich protein 2-like [Momordica charantia])

HSP 1 Score: 295.0 bits (754), Expect = 4.8e-76
Identity = 178/208 (85.58%), Postives = 182/208 (87.50%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEV RSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQAVEY IDYD
Sbjct: 1   MAEVXRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGG--GRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYD 120
           EDQR KAVDVTVIGRSS +GG RGG  GRGRGGGYGRF GGGYG GGG GRGFGRGGRYD
Sbjct: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYG-GGGGGRGFGRGGRYD 120

Query: 121 GPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNG--GAPPGRGGGGRGYGGGRGYGGG 180
           GPS  FGGG  GRGGGECYNCGR+GHLARDCYRGNG  GAPPGR GG R YGGGR YGG 
Sbjct: 121 GPSGGFGGG--GRGGGECYNCGRVGHLARDCYRGNGGAGAPPGR-GGTRRYGGGRSYGG- 180

Query: 181 SGGGGGGGGGCYNCGDTGHFARDCQNES 205
            GGGGGG GGC+NCGD GHFAR+C NES
Sbjct: 181 -GGGGGGAGGCFNCGDAGHFARECPNES 202

[Close]
BLAST of Tan0009580 vs. ExPASy TrEMBL
Match: A0A6J1FIQ9 (cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 181/207 (87.44%), Postives = 184/207 (88.89%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSG-GGYGSGGGSGRGFGR-GGRYD 120
           EDQR KAVDVTV GRSSG+GG RGG RGRGGGYGRF G GGYG     GRGFGR GGRYD
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYG-----GRGFGRGGGRYD 120

Query: 121 GPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSG 180
           GPS  FGGGG GRGGGECYNCGRMGHLARDCYRGNGGAPP R GGGRGYGGGRGYG   G
Sbjct: 121 GPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSR-GGGRGYGGGRGYG---G 180

Query: 181 GGGGGGGGCYNCGDTGHFARDCQNESK 206
           GGGGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGGGRGCYNCGDTGHFARDCQNESK 198

[Close]
BLAST of Tan0009580 vs. ExPASy TrEMBL
Match: A0A6J1K351 (cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 9.2e-81
Identity = 179/207 (86.47%), Postives = 182/207 (87.92%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSG-GGYGSGGGSGRGFGR-GGRYD 120
           EDQR KAVDVTV GRSSG+GG RGG RGRGGGYGRF G GGYG     GRGFGR GGRYD
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYG-----GRGFGRGGGRYD 120

Query: 121 GPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSG 180
           GPS  FGGGG GRGGGECYNCGRMGHLARDCYRGNGGAPP R GGGRGYGGGRGY     
Sbjct: 121 GPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSR-GGGRGYGGGRGY----- 180

Query: 181 GGGGGGGGCYNCGDTGHFARDCQNESK 206
           GGGGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGGGRGCYNCGDTGHFARDCQNESK 196

[Close]
BLAST of Tan0009580 vs. ExPASy TrEMBL
Match: A0A6J1CIH7 (glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76
Identity = 178/208 (85.58%), Postives = 182/208 (87.50%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEV RSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQAVEY IDYD
Sbjct: 1   MAEVXRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGG--GRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYD 120
           EDQR KAVDVTVIGRSS +GG RGG  GRGRGGGYGRF GGGYG GGG GRGFGRGGRYD
Sbjct: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYG-GGGGGRGFGRGGRYD 120

Query: 121 GPSVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNG--GAPPGRGGGGRGYGGGRGYGGG 180
           GPS  FGGG  GRGGGECYNCGR+GHLARDCYRGNG  GAPPGR GG R YGGGR YGG 
Sbjct: 121 GPSGGFGGG--GRGGGECYNCGRVGHLARDCYRGNGGAGAPPGR-GGTRRYGGGRSYGG- 180

Query: 181 SGGGGGGGGGCYNCGDTGHFARDCQNES 205
            GGGGGG GGC+NCGD GHFAR+C NES
Sbjct: 181 -GGGGGGAGGCFNCGDAGHFARECPNES 202

[Close]
BLAST of Tan0009580 vs. ExPASy TrEMBL
Match: A0A1S3CPN9 (cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.7e-72
Identity = 163/205 (79.51%), Postives = 167/205 (81.46%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYDGP 120
           +DQR KAVDVTVI RS+ +GG RGGGRGRGG YGRF        GG GRGFGRG  YDGP
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRF--------GGGGRGFGRGRWYDGP 120

Query: 121 SVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGGG 180
           S     GG GRGGGECYNCGRMGHLARDCYRGNGGAPP     GR Y GGRGY     GG
Sbjct: 121 S-----GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP-----GRRYEGGRGY-----GG 180

Query: 181 GGGGGGCYNCGDTGHFARDCQNESK 206
           GGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGRGCYNCGDTGHFARDCQNESK 182

[Close]
BLAST of Tan0009580 vs. ExPASy TrEMBL
Match: A0A5A7TX13 (Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00260 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.7e-72
Identity = 163/205 (79.51%), Postives = 167/205 (81.46%), Query Frame = 0 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VE+ IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRPKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYDGP 120
           +DQR KAVDVTVI RS+ +GG RGGGRGRGG YGRF        GG GRGFGRG  YDGP
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRF--------GGGGRGFGRGRWYDGP 120

Query: 121 SVAFGGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGGG 180
           S     GG GRGGGECYNCGRMGHLARDCYRGNGGAPP     GR Y GGRGY     GG
Sbjct: 121 S-----GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP-----GRRYEGGRGY-----GG 180

Query: 181 GGGGGGCYNCGDTGHFARDCQNESK 206
           GGGG GCYNCGDTGHFARDCQNESK
Sbjct: 181 GGGGRGCYNCGDTGHFARDCQNESK 182

[Close]
BLAST of Tan0009580 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 115/199 (57.79%), Postives = 135/199 (67.84%), Query Frame = 0 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD GDDLFVHQ+SIRSEGFR+L   +AVE+ ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  PKAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGRGGRYDGPSVAF 124
           PKA+DV+    +   G + GG  G  GG+G   GGG GSGGG G   G GG Y       
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYG---GGGGGYG------ 128

Query: 125 GGGGAGRGGGECYNCGRMGHLARDCYRGNGGAPPGRG--GGGRGY-GGGRGYGGGSGGGG 184
           G GG GRGG +CY CG  GH+ARDC  G GG   G G  GGG GY GGG GYGGG  GGG
Sbjct: 129 GRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGG 188

Query: 185 GGGGGCYNCGDTGHFARDC 201
           GGGG CY+CG++GHFARDC
Sbjct: 189 GGGGSCYSCGESGHFARDC 198

[Close]
BLAST of Tan0009580 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 141.4 bits (355), Expect = 8.3e-34
Identity = 108/198 (54.55%), Postives = 126/198 (63.64%), Query Frame = 0 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRP 65
           R  GTV+WF  QKGFGFI P D GDDLFVHQ+SIRSEGFR+L   ++VE+ ++ D   RP
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYGSGGGSGRGFGR-GGRYDGPSVAF 125
           KA++V      SG  GA   G   GGG    SGG  G GGG GRG GR GG Y G     
Sbjct: 74  KAIEV------SGPDGAPVQGNSGGGG---SSGGRGGFGGGGGRGGGRGGGSYGGGYGGR 133

Query: 126 GGGGAGRGGGE--CYNCGRMGHLARDCYRGNGGAPPGRGGGGRGYGGGRGYGGGSGGGGG 185
           G GG G GGG+  C+ CG  GH+AR+C +G GG   G GGG  G GGG       GGGGG
Sbjct: 134 GSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGG-------GGGGG 193

Query: 186 GGGGCYNCGDTGHFARDC 201
           GG  CY+CG++GHFARDC
Sbjct: 194 GGLSCYSCGESGHFARDC 195

[Close]
BLAST of Tan0009580 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-24
Identity = 102/219 (46.58%), Postives = 118/219 (53.88%), Query Frame = 0 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRP 65
           RS G V WFS  KG+GFI PDD G++LFVHQ+SI S+GFR+L  G++VEY I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVTVIGRSSGFGGARGGGRGRGGGYGRFSGGGYG------SGGGSGRGFGRGGRYDG 125
           KA++VT  G  S         RG GG    F+ G  G       GG  G+ FG       
Sbjct: 70  KAIEVTAPGGGS-LNKKENSSRGSGGNC--FNCGEVGHMAKDCDGGSGGKSFG------- 129

Query: 126 PSVAFGGGGAGRGG-GECYNCGRMGHLARDCYRGNGGAPPGRGGGG-------------- 185
                GGGG   GG GECY CG +GH ARDC +  GG   G GGGG              
Sbjct: 130 -----GGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAK 189

Query: 186 --RGYGGGRGYGGGSGGGGGGGGGCYNCGDTGHFARDCQ 202
             RG  GG  YGGG GG G GG GCY CG  GHFARDC+
Sbjct: 190 DCRGGSGGNRYGGG-GGRGSGGDGCYMCGGVGHFARDCR 212

[Close]
BLAST of Tan0009580 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-16
Identity = 96/217 (44.24%), Postives = 109/217 (50.23%), Query Frame = 0 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEYVIDYDEDQRP 65
           RS+G V WF+A KG+GFI PDD   +LFVHQ+SI SEG+R+L  G AVE+ I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVTVIGRSS--GFGGARGGGRGRGGGYGRFSGGGYGSG--GGSGRGFGRGGRYDGPS 125
           KAV+VT  G  S      +RG G  RGGG      G Y  G  G   +  G GG      
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGG----GSGCYNCGELGHISKDCGIGG------ 129

Query: 126 VAFGGGGA---GRGGGECYNCGRMGHLARDCYRGNGGAPPG--RGGGGRGYGGGR----- 185
              GGGG     RGG  CYNCG  GH ARDC     G   G  +GG    Y  G      
Sbjct: 130 ---GGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVA 189

Query: 186 --------GYGGGSGGGGGGGGGCYNCGDTGHFARDC 201
                   G G   G   GG  GCY CGD GHFARDC
Sbjct: 190 RDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

The following BLAST results are available for this feature:
BLAST of Tan0009580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q411881.7e-3957.79Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
P274846.6e-3651.61Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
Q388961.2e-3254.55Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
Q94C698.4e-2346.58Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
O656393.8e-1544.24Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
BLAST of Tan0009580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938383.13.8e-8187.44cold shock protein 2-like [Cucurbita moschata][more]
XP_023549669.11.9e-8086.89glycine-rich protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_022993723.11.9e-8086.47cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1,... [more]
XP_038906549.15.2e-7881.95glycine-rich protein 2-like [Benincasa hispida][more]
XP_022141389.14.8e-7685.58glycine-rich protein 2-like [Momordica charantia][more]
BLAST of Tan0009580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FIQ91.9e-8187.44cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=... [more]
A0A6J1K3519.2e-8186.47cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1[more]
A0A6J1CIH72.3e-7685.58glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 ... [more]
A0A1S3CPN92.7e-7279.51cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1[more]
A0A5A7TX132.7e-7279.51Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of Tan0009580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G38680.11.2e-4057.79glycine rich protein 2 [more]
AT2G21060.18.3e-3454.55glycine-rich protein 2B [more]
AT2G17870.16.0e-2446.58cold shock domain protein 3 [more]
AT4G36020.12.7e-1644.24cold shock domain protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 45..63
score: 30.46
coord: 30..39
score: 58.54
coord: 9..24
score: 60.88
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 8..72
e-value: 4.0E-22
score: 77.8
IPR002059Cold-shock protein, DNA-bindingPROSITEPS51857CSD_2coord: 6..72
score: 30.354204
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 9..72
e-value: 2.14758E-22
score: 84.1674
IPR011129Cold shock domainSMARTSM00357csp_8coord: 8..73
e-value: 6.8E-23
score: 92.0
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 186..202
e-value: 1.3E-5
score: 34.7
coord: 135..151
e-value: 2.7E-4
score: 30.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 186..201
e-value: 1.8E-7
score: 30.9
coord: 135..149
e-value: 7.3E-7
score: 29.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 187..202
score: 11.053757
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 136..149
score: 11.070239
NoneNo IPR availableGENE3D4.10.60.10coord: 183..205
e-value: 2.0E-6
score: 29.3
NoneNo IPR availableGENE3D2.40.50.140coord: 1..71
e-value: 9.9E-24
score: 85.1
NoneNo IPR availableGENE3D4.10.60.10coord: 118..158
e-value: 2.6E-6
score: 29.3
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 1..203
NoneNo IPR availablePANTHERPTHR46565:SF5GLYCINE-RICH PROTEIN 2-LIKEcoord: 1..203
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 20..39
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 127..152
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 168..202
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 5..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0009580.1Tan0009580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0007165 signal transduction
molecular_function GO:0043531 ADP binding
molecular_function GO:0003953 NAD+ nucleosidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding