Tan0009500 (gene) Snake gourd v1

Overview


Name	Tan0009500
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	NADH-ubiquinone oxidoreductase chain 1
Location	LG11: 58675923 .. 58676765 (-)
RNA-Seq Expression	Tan0009500
Synteny	Tan0009500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTGTATCTAAGTTTAGTTGGTTTTATAGTGGACATGAGTAGCTAAACGTGTTATCTTAGGGATATATGTAGCTTTTCAATCATGCTATTTTATTGAGTTGTCTGCTTTTGGTTTATTGTATTACTTTTATTTGTGCAATTGCATCCTTAATGCTTATAGACTCTTGATCACGGTTTATTTATTCTTAGATCTAAATTTATGCTTGCGAAAGGTAGTTTAGATCTGATCTCAATTGTATGACTGATAGTCACTTTGACATGAAAATGATTAGGGTGCTATTAGAAGTCATATAAGAATTGAACCTAATGCCATGCTTTATTTTTAAAAGCTAGACAACACTGCTGGTTTTATTTTCATGCATGAGATTCACTTGCCTCGAGATGGTCATTTGTTATGTTTGTTTCTTGGTTTATAAAAGCAGTGCAATTTTCCATTAGCATGACCTCAATAAAATAGTTGATTGATTGGTGAAATCTTGTCCCTAAGATATTTGTCTCTCCTGATTGTTCTCCAATTTTCACTCTTTGTTATTTTGTTTTTCTTCACCTAAAGTTTGATTGTTCTAGATAAAATGGAGTGGTAATATTTATAGGAATTAATTGAATTAAATAACTCAATCTTGTGGATGATACTCGTACTCAAATTCAGTATATTAAAACTTGACTGTGCACTTGCGGTACTGCAAAATTTACGCAACAAGAATGCTAACCCTGTCTCAAGGCACTACGATCTGCATCTCAAATGGTCCCTTGTGAAGTCTCTATCGGTCTTATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAA

mRNA sequence

ATGATTTTGTATCTAAGTTTAGTTGGTTTTATAGCACTACGATCTGCATCTCAAATGGTCCCTTGTGAAGTCTCTATCGGTCTTATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAA

Coding sequence (CDS)

ATGATTTTGTATCTAAGTTTAGTTGGTTTTATAGCACTACGATCTGCATCTCAAATGGTCCCTTGTGAAGTCTCTATCGGTCTTATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAA

Protein sequence

MILYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMFS

Homology

[Close]

BLAST of Tan0009500 vs. NCBI nr
Match: WP_206445360.1 (NADH-quinone oxidoreductase subunit H [Candidatus Frankia datiscae])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 3  LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
          LY       ALRSA+QMVP EVSIGLILIVRLVSAFGSAKAIARMF
Sbjct: 7  LYSKYAFLGALRSAAQMVPYEVSIGLILIVRLVSAFGSAKAIARMF 52

[Close]

BLAST of Tan0009500 vs. NCBI nr
Match: KAF3452161.1 (hypothetical protein FNV43_RR08259 [Rhamnella rubrinervis])

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-06
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 12  ALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           ALRSA+QMVP EVSIGLILIVRLVSA GSAKAIARMF
Sbjct: 79  ALRSAAQMVPYEVSIGLILIVRLVSALGSAKAIARMF 115

[Close]

BLAST of Tan0009500 vs. NCBI nr
Match: VAH31308.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-06
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LYL      ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIAR+F
Sbjct: 67  LYLKYAFLGALRSAAQMVPYEVSIGLILIVRLVSMFGSAKAIARIF 112

[Close]

BLAST of Tan0009500 vs. NCBI nr
Match: XP_020572886.1 (uncharacterized protein LOC110019532 [Phalaenopsis equestris])

HSP 1 Score: 60.1 bits (144), Expect = 6.3e-06
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LY       ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIARMF
Sbjct: 94  LYSKYAFLGALRSAAQMVPYEVSIGLILIVRLVSTFGSAKAIARMF 139

[Close]

BLAST of Tan0009500 vs. NCBI nr
Match: PKU60428.1 (NADH-ubiquinone oxidoreductase chain 1 [Dendrobium catenatum])

HSP 1 Score: 60.1 bits (144), Expect = 6.3e-06
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LY       ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIARMF
Sbjct: 109 LYSKYAFLGALRSAAQMVPYEVSIGLILIVRLVSTFGSAKAIARMF 154

[Close]

BLAST of Tan0009500 vs. ExPASy TrEMBL
Match: A0A446L198 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_2Av1G158480 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LYL      ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIAR+F
Sbjct: 67  LYLKYAFLGALRSAAQMVPYEVSIGLILIVRLVSMFGSAKAIARIF 112

[Close]

BLAST of Tan0009500 vs. ExPASy TrEMBL
Match: A0A3B6AYN1 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LYL      ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIAR+F
Sbjct: 67  LYLKYAFLGALRSAAQMVPYEVSIGLILIVRLVSMFGSAKAIARIF 112

[Close]

BLAST of Tan0009500 vs. ExPASy TrEMBL
Match: A0A2I0VAJ2 (NADH-ubiquinone oxidoreductase chain 1 OS=Dendrobium catenatum OX=906689 GN=ND1 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LY       ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIARMF
Sbjct: 109 LYSKYAFLGALRSAAQMVPYEVSIGLILIVRLVSTFGSAKAIARMF 154

[Close]

BLAST of Tan0009500 vs. ExPASy TrEMBL
Match: A0A3B6ISY2 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-06
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3  LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
          LY       ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIAR+F
Sbjct: 45 LYSKYAFLAALRSAAQMVPYEVSIGLILIVRLVSRFGSAKAIARIF 90

[Close]

BLAST of Tan0009500 vs. ExPASy TrEMBL
Match: A0A341YN22 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-06
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3   LYLSLVGFIALRSASQMVPCEVSIGLILIVRLVSAFGSAKAIARMF 49
           LY       ALRSA+QMVP EVSIGLILIVRLVS FGSAKAIAR+F
Sbjct: 67  LYSKYAFLGALRSAAQMVPYEVSIGLILIVRLVSTFGSAKAIARIF 112

The following BLAST results are available for this feature:

BLAST of Tan0009500 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009500 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_206445360.1	2.2e-06	80.43	NADH-quinone oxidoreductase subunit H [Candidatus Frankia datiscae]	[more]
KAF3452161.1	4.8e-06	91.89	hypothetical protein FNV43_RR08259 [Rhamnella rubrinervis]	[more]
VAH31308.1	4.8e-06	78.26	unnamed protein product [Triticum turgidum subsp. durum]	[more]
XP_020572886.1	6.3e-06	78.26	uncharacterized protein LOC110019532 [Phalaenopsis equestris]	[more]
PKU60428.1	6.3e-06	78.26	NADH-ubiquinone oxidoreductase chain 1 [Dendrobium catenatum]	[more]

BLAST of Tan0009500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A446L198	2.3e-06	78.26	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_2Av1G...	[more]
A0A3B6AYN1	2.3e-06	78.26	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
A0A2I0VAJ2	3.0e-06	78.26	NADH-ubiquinone oxidoreductase chain 1 OS=Dendrobium catenatum OX=906689 GN=ND1 ...	[more]
A0A3B6ISY2	5.2e-06	76.09	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
A0A341YN22	8.8e-06	76.09	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]

BLAST of Tan0009500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48185	FAMILY NOT NAMED	coord: 3..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009500.1	Tan0009500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016491	oxidoreductase activity