Tan0009361 (gene) Snake gourd v1

Overview


Name	Tan0009361
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG03: 17151458 .. 17151667 (+)
RNA-Seq Expression	Tan0009361
Synteny	Tan0009361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAAAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAACATGGAGGAACAAATCTTTACGCGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGGAGATCTAGAAAAGAAGTATGGCATTTAA

mRNA sequence

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAAAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAACATGGAGGAACAAATCTTTACGCGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGGAGATCTAGAAAAGAAGTATGGCATTTAA

Coding sequence (CDS)

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAAAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAACATGGAGGAACAAATCTTTACGCGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGGAGATCTAGAAAAGAAGTATGGCATTTAA

Protein sequence

MARGGKRGRQVETGTQEATGDRGKEVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQGDLEKKYGI

Homology

[Close]

BLAST of Tan0009361 vs. NCBI nr
Match: WP_217833179.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-08
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 26 VSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQGDLEKKYGI 70
          +SEGESSHPQ EVN+EEQ+FTRI QRLA S+GS + D EKKY I
Sbjct: 1  MSEGESSHPQAEVNVEEQLFTRIAQRLAASIGSVESDPEKKYSI 44

[Close]

BLAST of Tan0009361 vs. ExPASy TrEMBL
Match: A0A5A7SKG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00920 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.8e-04
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 12  ETGTQEATGDRGKEVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQGDLEKKYGI 70
           E GT +AT    +E + G+S+H   + NMEE+IF +I QRLA+ V  AQ DLEKKYGI
Sbjct: 81  EFGTCKATRS-PREFTVGDSNHSLAQENMEERIFNKIAQRLADGVRLAQADLEKKYGI 137

The following BLAST results are available for this feature:

BLAST of Tan0009361 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009361 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833179.1	7.2e-08	72.73	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]

BLAST of Tan0009361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKG0	6.8e-04	53.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0009361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009361.1	Tan0009361.1	mRNA