Tan0009293 (gene) Snake gourd v1

Overview
NameTan0009293
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
LocationLG05: 50352537 .. 50353154 (+)
RNA-Seq ExpressionTan0009293
SyntenyTan0009293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAGCAGTCCACCGCTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGAAAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGTCTTGCCCTCCTATGTTTCTATATCAAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTCTAGCTCAGAATCAACTACATCAATTAATCCTCTCTATAAAACATGGATGACAGTTGATCAGCTACTGATCGGTTGGCTTTATAATTCAATGACTTCAGAAGTCGCAACACAGGTTATGGGGTGCAACACGGCCAAAGACCTGTGGGATGCTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGCGTCAAAAATTTCAACAATCACGCAAAGGTAATATGAAAATGTCTGAATATTTAAGGATTATGAAGTGCCATGCTGACAATCTAGGGCAAGCTGGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACGAAGAATAA

mRNA sequence

ATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAGCAGTCCACCGCTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGAAAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGTCTTGCCCTCCTATGTTTCTATATCAAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTCTAGCTCAGAATCAACTACATCAATTAATCCTCTCTATAAAACATGGATGACAGTTATGGGGTGCAACACGGCCAAAGACCTGTGGGATGCTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGCGTCAAAAATTTCAACAATCACGCAAAGGTAATATGAAAATGTCTGAATATTTAAGGATTATGAAGTGCCATGCTGACAATCTAGGGCAAGCTGGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACGAAGAATAA

Coding sequence (CDS)

ATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAGCAGTCCACCGCTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGAAAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGTCTTGCCCTCCTATGTTTCTATATCAAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTCTAGCTCAGAATCAACTACATCAATTAATCCTCTCTATAAAACATGGATGACAGTTATGGGGTGCAACACGGCCAAAGACCTGTGGGATGCTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGCGTCAAAAATTTCAACAATCACGCAAAGGTAATATGAAAATGTCTGAATATTTAAGGATTATGAAGTGCCATGCTGACAATCTAGGGCAAGCTGGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACGAAGAATAA

Protein sequence

MANALLNESSSFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGASSSSESTTSINPLYKTWMTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE
Homology
BLAST of Tan0009293 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 4.3e-47
Identity = 106/187 (56.68%), Postives = 133/187 (71.12%), Query Frame = 0

Query: 19  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTE 78
           F+SPPLNQLLNQ+T+IK++RGNFLLW+NLALPILRSYKL  +L G K CPP  L    T 
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 79  GNVTVEGASSSSESTTSINPLYKTW--------------------MTVMGCNTAKDLWDA 138
            N  +EG S+SS+S+ ++NP Y+ W                    M VMG +T+++LW A
Sbjct: 82  TN--IEG-STSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTA 141

Query: 139 IQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQV 186
           +Q LFGVQSRAE DYL+Q FQQ+ KG+++M EYL++MK HADNL  AGS VS R L+SQV
Sbjct: 142 VQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQV 201

BLAST of Tan0009293 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 3.7e-43
Identity = 102/198 (51.52%), Postives = 127/198 (64.14%), Query Frame = 0

Query: 13  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFL 72
           S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+
Sbjct: 12  SLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFV 71

Query: 73  YQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT--------------------V 132
             A +    VT EGA ++  +++SI P     L++ W+T                    +
Sbjct: 72  LSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

Query: 133 MGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAG 185
           MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ G
Sbjct: 132 MGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVG 191

BLAST of Tan0009293 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-39
Identity = 95/191 (49.74%), Postives = 120/191 (62.83%), Query Frame = 0

Query: 13  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFL 72
           S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+
Sbjct: 12  SLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFV 71

Query: 73  YQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT--------------------V 132
             A +    VT EGA ++  +++SI P     L++ W+T                    +
Sbjct: 72  LSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

Query: 133 MGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAG 178
           MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ G
Sbjct: 132 MGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVG 191

BLAST of Tan0009293 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 89/191 (46.60%), Postives = 117/191 (61.26%), Query Frame = 0

Query: 13  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFL 72
           +T    F++P LNQ+LNQ+TTIKL+RGN+LLWK LALPIL+SYKL SHL G   C P  +
Sbjct: 11  ATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKII 70

Query: 73  YQARTEGNVTVEGA-------SSSSESTTSINPLYKTWMT-------------------- 132
                     VE A       SSSS +  ++NP Y+ W+T                    
Sbjct: 71  MLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNSMTPEVTIQ 130

Query: 133 VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQA 177
           +MG   AKDLW+A Q LFG+QSRA+ED+L Q FQ ++KGN+ M EYLR MK + +NLGQA
Sbjct: 131 LMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKNNVNNLGQA 190

BLAST of Tan0009293 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-35
Identity = 97/197 (49.24%), Postives = 117/197 (59.39%), Query Frame = 0

Query: 32  TTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTV-------- 91
           TTIKL++ N+LLW+NLALPILRSY+LE HL G   CPP F   A  +   TV        
Sbjct: 43  TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRFSV-ATDQSTATVPPGDEAGL 102

Query: 92  -------------EGASSSSEST--TSINPLYKT----------W----------MTVMG 151
                        +G +++S S+    +NP Y++          W          M VMG
Sbjct: 103 GGQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMG 162

Query: 152 CNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSP 186
               K LW AIQ LFG+QSRA EDYLRQ FQQ+ KG MKM EYLR+MK H+DNLG  GSP
Sbjct: 163 YENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSP 222

BLAST of Tan0009293 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.1e-47
Identity = 106/187 (56.68%), Postives = 133/187 (71.12%), Query Frame = 0

Query: 19  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTE 78
           F+SPPLNQLLNQ+T+IK++RGNFLLW+NLALPILRSYKL  +L G K CPP  L    T 
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 79  GNVTVEGASSSSESTTSINPLYKTW--------------------MTVMGCNTAKDLWDA 138
            N  +EG S+SS+S+ ++NP Y+ W                    M VMG +T+++LW A
Sbjct: 82  TN--IEG-STSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTA 141

Query: 139 IQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQV 186
           +Q LFGVQSRAE DYL+Q FQQ+ KG+++M EYL++MK HADNL  AGS VS R L+SQV
Sbjct: 142 VQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQV 201

BLAST of Tan0009293 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.8e-43
Identity = 102/198 (51.52%), Postives = 127/198 (64.14%), Query Frame = 0

Query: 13  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFL 72
           S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+
Sbjct: 12  SLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFV 71

Query: 73  YQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT--------------------V 132
             A +    VT EGA ++  +++SI P     L++ W+T                    +
Sbjct: 72  LSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

Query: 133 MGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAG 185
           MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ G
Sbjct: 132 MGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVG 191

BLAST of Tan0009293 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 95/191 (49.74%), Postives = 120/191 (62.83%), Query Frame = 0

Query: 13  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFL 72
           S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+
Sbjct: 12  SLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFV 71

Query: 73  YQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT--------------------V 132
             A +    VT EGA ++  +++SI P     L++ W+T                    +
Sbjct: 72  LSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

Query: 133 MGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAG 178
           MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ G
Sbjct: 132 MGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVG 191

BLAST of Tan0009293 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 89/191 (46.60%), Postives = 117/191 (61.26%), Query Frame = 0

Query: 13  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFL 72
           +T    F++P LNQ+LNQ+TTIKL+RGN+LLWK LALPIL+SYKL SHL G   C P  +
Sbjct: 11  ATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKII 70

Query: 73  YQARTEGNVTVEGA-------SSSSESTTSINPLYKTWMT-------------------- 132
                     VE A       SSSS +  ++NP Y+ W+T                    
Sbjct: 71  MLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNSMTPEVTIQ 130

Query: 133 VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQA 177
           +MG   AKDLW+A Q LFG+QSRA+ED+L Q FQ ++KGN+ M EYLR MK + +NLGQA
Sbjct: 131 LMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKNNVNNLGQA 190

BLAST of Tan0009293 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 86  ASSSSESTTSINPLYKTWMT--------------------VMGCNTAKDLWDAIQLLFGV 145
           +SSS  +  +INPLY++W+T                    VMG   A DLW AIQ LFGV
Sbjct: 21  SSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGV 80

Query: 146 QSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE 186
           QS+AEEDYLRQ FQQ+RKG++KM+++LR+MK HADNLGQAGSPV TRSLISQVLLGLDEE
Sbjct: 81  QSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEE 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022151683.14.3e-4756.68uncharacterized protein LOC111019598 [Momordica charantia][more]
KAA0026100.13.7e-4351.52uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
TYJ96311.12.5e-3949.74uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa][more]
KAA0067279.12.6e-3646.60uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
XP_038902487.12.9e-3549.24uncharacterized protein LOC120089143 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DCW42.1e-4756.68uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7SIT71.8e-4351.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCH91.2e-3949.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VPY01.3e-3646.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1D5J02.8e-2860.83uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 104..182
e-value: 7.9E-7
score: 28.9
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 25..176
NoneNo IPR availablePANTHERPTHR37610:SF39GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 25..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0009293.1Tan0009293.1mRNA