Tan0009292 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTCACTACTTCCACACCCATTCAGTATCGTCTTTATGGCCACAGCACCACCCCTTCCGCCCACCGTTCCCATCAAACTCTGGAAGTCCGATTACACTATCTCTACCGTCTGATCTACGTTTCTCCCTCCGCCGGAGTTCCTCCCCAAACCATCCATGAAACCGCACCCACCCTACTGAAAAATGCTCTGTTCCATCTCTCTCTGCGCCAACTCCAGGATCCCTTGTCCTACGTCACACAGTTCCTCTCCTCACTCAACATCCGCGCCGCTGTTTGCGATATCATTGCTCCGCATATCGCGTCCTTCATCACCCAAATCTCCGGCGAAAACAGAGAGACGAACTTTCACTTTGTCGCGGAGGTCGATTTCATCCGACTGATCACCTGGATGGGAATAACTCCTCAACCGTACCAGGGATGGATCAACGGTGGTGCGATGGTGGAGGAAACGGTGGTTTTAGAAGAAGCTCCGCCGGCGAGGAGAGGAGTGGCGGAGACTGCGATGGAGAGGTTGAGAATGGAGAAATTGGAAGAGAATGAGGAAGATGATGATTTTGGGGATTGCAGTATCTGTTTGAATGAAATGAATTGCAAGAAGAGAGAGGTGATAAAAATCCCCTGCGGGCATGTGTATCATCAATCATGCATCTTCAAGTGGCTTAACACTAACAATTCTTGCCCTTTGTGTAGAAGGCCATTGCCATTGGAGAACTGA ATGTCTTTCACTACTTCCACACCCATTCAGTATCGTCTTTATGGCCACAGCACCACCCCTTCCGCCCACCGTTCCCATCAAACTCTGGAAGTCCGATTACACTATCTCTACCGTCTGATCTACGTTTCTCCCTCCGCCGGAGTTCCTCCCCAAACCATCCATGAAACCGCACCCACCCTACTGAAAAATGCTCTGTTCCATCTCTCTCTGCGCCAACTCCAGGATCCCTTGTCCTACGTCACACAGTTCCTCTCCTCACTCAACATCCGCGCCGCTGTTTGCGATATCATTGCTCCGCATATCGCGTCCTTCATCACCCAAATCTCCGGCGAAAACAGAGAGACGAACTTTCACTTTGTCGCGGAGGTCGATTTCATCCGACTGATCACCTGGATGGGAATAACTCCTCAACCGTACCAGGGATGGATCAACGGTGGTGCGATGGTGGAGGAAACGGTGGTTTTAGAAGAAGCTCCGCCGGCGAGGAGAGGAGTGGCGGAGACTGCGATGGAGAGGTTGAGAATGGAGAAATTGGAAGAGAATGAGGAAGATGATGATTTTGGGGATTGCAGTATCTGTTTGAATGAAATGAATTGCAAGAAGAGAGAGGTGATAAAAATCCCCTGCGGGCATGTGTATCATCAATCATGCATCTTCAAGTGGCTTAACACTAACAATTCTTGCCCTTTGTGTAGAAGGCCATTGCCATTGGAGAACTGA ATGTCTTTCACTACTTCCACACCCATTCAGTATCGTCTTTATGGCCACAGCACCACCCCTTCCGCCCACCGTTCCCATCAAACTCTGGAAGTCCGATTACACTATCTCTACCGTCTGATCTACGTTTCTCCCTCCGCCGGAGTTCCTCCCCAAACCATCCATGAAACCGCACCCACCCTACTGAAAAATGCTCTGTTCCATCTCTCTCTGCGCCAACTCCAGGATCCCTTGTCCTACGTCACACAGTTCCTCTCCTCACTCAACATCCGCGCCGCTGTTTGCGATATCATTGCTCCGCATATCGCGTCCTTCATCACCCAAATCTCCGGCGAAAACAGAGAGACGAACTTTCACTTTGTCGCGGAGGTCGATTTCATCCGACTGATCACCTGGATGGGAATAACTCCTCAACCGTACCAGGGATGGATCAACGGTGGTGCGATGGTGGAGGAAACGGTGGTTTTAGAAGAAGCTCCGCCGGCGAGGAGAGGAGTGGCGGAGACTGCGATGGAGAGGTTGAGAATGGAGAAATTGGAAGAGAATGAGGAAGATGATGATTTTGGGGATTGCAGTATCTGTTTGAATGAAATGAATTGCAAGAAGAGAGAGGTGATAAAAATCCCCTGCGGGCATGTGTATCATCAATCATGCATCTTCAAGTGGCTTAACACTAACAATTCTTGCCCTTTGTGTAGAAGGCCATTGCCATTGGAGAACTGA MSFTTSTPIQYRLYGHSTTPSAHRSHQTLEVRLHYLYRLIYVSPSAGVPPQTIHETAPTLLKNALFHLSLRQLQDPLSYVTQFLSSLNIRAAVCDIIAPHIASFITQISGENRETNFHFVAEVDFIRLITWMGITPQPYQGWINGGAMVEETVVLEEAPPARRGVAETAMERLRMEKLEENEEDDDFGDCSICLNEMNCKKREVIKIPCGHVYHQSCIFKWLNTNNSCPLCRRPLPLEN Homology
BLAST of Tan0009292 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.3e-10 Identity = 28/88 (31.82%), Postives = 53/88 (60.23%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09 Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy Swiss-Prot
Match: Q7ZW78 (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy Swiss-Prot
Match: Q9NVW2 (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08 Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Tan0009292 vs. NCBI nr
Match: KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 256.1 bits (653), Expect = 2.9e-64 Identity = 134/238 (56.30%), Postives = 165/238 (69.33%), Query Frame = 0
BLAST of Tan0009292 vs. NCBI nr
Match: KAG6603243.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 253.8 bits (647), Expect = 1.4e-63 Identity = 133/238 (55.88%), Postives = 164/238 (68.91%), Query Frame = 0
BLAST of Tan0009292 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]) HSP 1 Score: 253.8 bits (647), Expect = 1.4e-63 Identity = 131/239 (54.81%), Postives = 164/239 (68.62%), Query Frame = 0
BLAST of Tan0009292 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 241.1 bits (614), Expect = 9.7e-60 Identity = 129/239 (53.97%), Postives = 163/239 (68.20%), Query Frame = 0
BLAST of Tan0009292 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus]) HSP 1 Score: 238.4 bits (607), Expect = 6.3e-59 Identity = 130/236 (55.08%), Postives = 160/236 (67.80%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 4.7e-60 Identity = 129/239 (53.97%), Postives = 163/239 (68.20%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 4.7e-60 Identity = 129/239 (53.97%), Postives = 163/239 (68.20%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 3.0e-59 Identity = 130/236 (55.08%), Postives = 160/236 (67.80%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 3.0e-59 Identity = 130/236 (55.08%), Postives = 160/236 (67.80%), Query Frame = 0
BLAST of Tan0009292 vs. ExPASy TrEMBL
Match: A0A6J1EKL4 (E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111435522 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 3.5e-55 Identity = 116/201 (57.71%), Postives = 141/201 (70.15%), Query Frame = 0
BLAST of Tan0009292 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 69.7 bits (169), Expect = 3.6e-12 Identity = 31/100 (31.00%), Postives = 52/100 (52.00%), Query Frame = 0
BLAST of Tan0009292 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.2e-11 Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of Tan0009292 vs. TAIR 10
Match: AT5G37200.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.1 bits (157), Expect = 8.8e-11 Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0
BLAST of Tan0009292 vs. TAIR 10
Match: AT5G37270.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.1 bits (157), Expect = 8.8e-11 Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 0
BLAST of Tan0009292 vs. TAIR 10
Match: AT5G37230.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10 Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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