Tan0009287 (gene) Snake gourd v1

Overview


Name	Tan0009287
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mannan endo-1,4-beta-mannosidase 4-like
Location	LG11: 6709262 .. 6709477 (+)
RNA-Seq Expression	Tan0009287
Synteny	Tan0009287

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCTCGACTAAAATATTGGCAATGTGCATCATTATGATAATGGTGTGCTCATTTCTAGTAGAGACAATAAATGCAACTACTCTTCATTATGACGCCATCGCTCTGGATGGAAGACCAAGATGTAGATCAGGTAAGTGCAGAATACTAGGACGTCCAGCCAACAAATATAATAGAGGATGTGAGGCTATTGAAAGGTGCAGAGGCGACTAA

mRNA sequence

ATGGCAACCTCGACTAAAATATTGGCAATGTGCATCATTATGATAATGGTGTGCTCATTTCTAGTAGAGACAATAAATGCAACTACTCTTCATTATGACGCCATCGCTCTGGATGGAAGACCAAGATGTAGATCAGGTAAGTGCAGAATACTAGGACGTCCAGCCAACAAATATAATAGAGGATGTGAGGCTATTGAAAGGTGCAGAGGCGACTAA

Coding sequence (CDS)

ATGGCAACCTCGACTAAAATATTGGCAATGTGCATCATTATGATAATGGTGTGCTCATTTCTAGTAGAGACAATAAATGCAACTACTCTTCATTATGACGCCATCGCTCTGGATGGAAGACCAAGATGTAGATCAGGTAAGTGCAGAATACTAGGACGTCCAGCCAACAAATATAATAGAGGATGTGAGGCTATTGAAAGGTGCAGAGGCGACTAA

Protein sequence

MATSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGCEAIERCRGD

Homology

[Close]

BLAST of Tan0009287 vs. NCBI nr
Match: KAG6603811.1 (hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.2e-11
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MATSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNR 60
           MA STK+ A+CIIM++V SF+V    A +L Y A+  D   +C  GKC  LG PAN YNR
Sbjct: 69  MAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNR 128

Query: 61  GCEAIERCRG 71
           GCEA + CRG
Sbjct: 129 GCEADKMCRG 138

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BLAST of Tan0009287 vs. NCBI nr
Match: KAE8648219.1 (hypothetical protein Csa_018424, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 3  TSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGC 62
          T+  +  + + MIMVCS +    NAT+L Y AI   G  RC+ GKC ILG PAN Y RGC
Sbjct: 5  TNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIG-KGDARCKDGKCEILGDPANNYTRGC 64

Query: 63 EAIERCR 70
          E  E CR
Sbjct: 65 EPEEHCR 70

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BLAST of Tan0009287 vs. NCBI nr
Match: KAE8648222.1 (hypothetical protein Csa_023891, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 3  TSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGC 62
          T+  +  + + MIMVCS +    NAT+L Y AI   G  RC+ GKC ILG PAN Y RGC
Sbjct: 2  TNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIG-KGDARCKDGKCEILGDPANNYTRGC 61

Query: 63 EAIERCR 70
          E  E CR
Sbjct: 62 EPEEHCR 67

[Close]

BLAST of Tan0009287 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_018501 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 3  TSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGC 62
          T+  +  + + MIMVCS +    NAT+L Y AI   G  RC+ GKC ILG PAN Y RGC
Sbjct: 5  TNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIG-KGDARCKDGKCEILGDPANNYTRGC 64

Query: 63 EAIERCR 70
          E  E CR
Sbjct: 65 EPEEHCR 70

[Close]

BLAST of Tan0009287 vs. NCBI nr
Match: KAA0058710.1 (protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1  MATST-KILAMCIIMIMVCSFLVETINAT-TLHYDAIALDGRPRCRSGKCRILGRPANKY 60
          MA++T KILA+ I MIMVCS +V   NA  +L Y AI  D   +C  G C+ L  PAN Y
Sbjct: 1  MASNTNKILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGY 60

Query: 61 NRGCEAIERCR 70
          NRGCE    CR
Sbjct: 61 NRGCEPENDCR 71

[Close]

BLAST of Tan0009287 vs. ExPASy TrEMBL
Match: A0A0A0KLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 3  TSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGC 62
          T+  +  + + MIMVCS +    NAT+L Y AI   G  RC+ GKC ILG PAN Y RGC
Sbjct: 5  TNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIG-KGDARCKDGKCEILGDPANNYTRGC 64

Query: 63 EAIERCR 70
          E  E CR
Sbjct: 65 EPEEHCR 70

[Close]

BLAST of Tan0009287 vs. ExPASy TrEMBL
Match: A0A0A0KJT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 3  TSTKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGC 62
          T+  ++ + I MIM CS +    NAT+L Y  I   G  RC+ GKC ILG PAN Y RGC
Sbjct: 5  TNKTLVILMIAMIMACSLIENPTNATSLGYGVIG-KGDARCKDGKCEILGDPANNYTRGC 64

Query: 63 EAIERCR 70
          E  E CR
Sbjct: 65 EPEEHCR 70

[Close]

BLAST of Tan0009287 vs. ExPASy TrEMBL
Match: A0A5A7UUI8 (Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001660 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1  MATST-KILAMCIIMIMVCSFLVETINAT-TLHYDAIALDGRPRCRSGKCRILGRPANKY 60
          MA++T KILA+ I MIMVCS +V   NA  +L Y AI  D   +C  G C+ L  PAN Y
Sbjct: 1  MASNTNKILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGY 60

Query: 61 NRGCEAIERCR 70
          NRGCE    CR
Sbjct: 61 NRGCEPENDCR 71

[Close]

BLAST of Tan0009287 vs. ExPASy TrEMBL
Match: A0A200RBE7 (Lipid-A-disaccharide synthase OS=Macleaya cordata OX=56857 GN=BVC80_1667g66 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.9e-05
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 5   TKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGCEA 64
           +++L +CI + +VCS L+E+  ATTL Y  +  DG P C   KC       N YNRGCE 
Sbjct: 423 SRVLILCIAVALVCSLLMESTGATTLSYGTLGSDGIP-CFGRKCG-KANDVNPYNRGCEK 482

Query: 65  IERCRGD 72
           + RCR D
Sbjct: 483 VFRCRSD 487

[Close]

BLAST of Tan0009287 vs. ExPASy TrEMBL
Match: A0A650ERE4 (Rapid alkalinization factor 7 OS=Pyrus x bretschneideri OX=225117 GN=RALF7 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 5  TKILAMCIIMIMVCSFLVETINATTLHYDAIALDGRPRCRSGKCRILGRPANKYNRGCEA 64
          +K   +CI+ ++VCS  +ET++  ++ Y A+  D    CR  +C  L  P++ Y+RGCE 
Sbjct: 4  SKTFTLCIVAVLVCSVCIETVSTKSIGYPAVRQDKPFHCRESRC--LPPPSSPYSRGCET 63

Query: 65 IERCRG 71
           E+CRG
Sbjct: 64 EEKCRG 67

The following BLAST results are available for this feature:

BLAST of Tan0009287 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009287 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603811.1	7.2e-11	54.29	hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8648219.1	2.2e-07	50.75	hypothetical protein Csa_018424, partial [Cucumis sativus]	[more]
KAE8648222.1	2.2e-07	50.75	hypothetical protein Csa_023891, partial [Cucumis sativus]	[more]
KGN49664.1	2.2e-07	50.75	hypothetical protein Csa_018501 [Cucumis sativus]	[more]
KAA0058710.1	4.1e-06	52.11	protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [...	[more]

BLAST of Tan0009287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLD0	1.0e-07	50.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1	[more]
A0A0A0KJT5	4.0e-07	49.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1	[more]
A0A5A7UUI8	2.0e-06	52.11	Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G...	[more]
A0A200RBE7	4.9e-05	44.78	Lipid-A-disaccharide synthase OS=Macleaya cordata OX=56857 GN=BVC80_1667g66 PE=3...	[more]
A0A650ERE4	1.1e-04	37.88	Rapid alkalinization factor 7 OS=Pyrus x bretschneideri OX=225117 GN=RALF7 PE=2 ...	[more]

BLAST of Tan0009287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 26..70 e-value: 3.2E-8 score: 34.4
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009287.1	Tan0009287.1	mRNA