Tan0009235 (gene) Snake gourd v1

Overview


Name	Tan0009235
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 66887520 .. 66887849 (-)
RNA-Seq Expression	Tan0009235
Synteny	Tan0009235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGAAGGCATCCGCAACAAAACTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCAACTCCATCATCGTTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTTCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTCTTTAAGATCAACGATTGTGACCCCAACTTTATCAAACACATTTCTCCTTCTCATTTGAATTTGATTAAGAAGATTTGTGATTTGTGA

mRNA sequence

ATGGTGGTGAAGGCATCCGCAACAAAACTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCAACTCCATCATCGTTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTTCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTCTTTAAGATCAACGATTGTGACCCCAACTTTATCAAACACATTTCTCCTTCTCATTTGAATTTGATTAAGAAGATTTGTGATTTGTGA

Coding sequence (CDS)

ATGGTGGTGAAGGCATCCGCAACAAAACTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCAACTCCATCATCGTTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTTCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTCTTTAAGATCAACGATTGTGACCCCAACTTTATCAAACACATTTCTCCTTCTCATTTGAATTTGATTAAGAAGATTTGTGATTTGTGA

Protein sequence

MVVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMCVADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL

Homology

[Close]

BLAST of Tan0009235 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-19
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 3   VKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMC 62
           +  SA KL LVFL+ IAI+    TMA TT   AAAP+P S+ ++  F +CAP ILEAT+C
Sbjct: 6   LNVSAMKLVLVFLVCIAILAPSTTMADTT---AAAPSP-SVPQNFPFLKCAPFILEATLC 65

Query: 63  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           V D+IKFPI+ HP+CCKA  K+NDC P   + I    +++IKKIC L
Sbjct: 66  VTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of Tan0009235 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 9   KLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMCVADIIK 68
           KL LVFL+ IAI+    TMA TT   AAAP+P S+ ++  F +CAP ILEAT+CV  +IK
Sbjct: 2   KLVLVFLVCIAILAPSTTMAGTT---AAAPSP-SVPQNFPFLKCAPFILEATLCVTGVIK 61

Query: 69  FPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           FPI+ HP+CCKA  K+ DC P+  + I  S +N+IKK C L
Sbjct: 62  FPIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of Tan0009235 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-16
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 3   VKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMC 62
           +KAS  K A VF++ IAI+ +  T  +T ++    P   S+ +++SF  CAP I + T+C
Sbjct: 6   LKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDP---SMSQNLSFFSCAPFIFDVTLC 65

Query: 63  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKIC 108
           + D+ KFPIS HP CCKA FK+NDC P   + I P+ +++IKKIC
Sbjct: 66  LVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

[Close]

BLAST of Tan0009235 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-16
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 3   VKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMC 62
           +KAS  KLALVF++ IAI+ +  T  +T   +++     S+ +D+SF  C P IL+AT+C
Sbjct: 3   LKASPMKLALVFIVSIAILAASATAGRT--VVSSTTLDPSISQDLSFFSCTPFILDATLC 62

Query: 63  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           + D+ KFPI+ HP CCKA FK+NDC P   + I  + ++++K IC L
Sbjct: 63  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 107

[Close]

BLAST of Tan0009235 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-16
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 5   ASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLI--EDISFKRCAPLILEATMC 64
           AS  +LALVFL+ I +IL+P   A T   +A AP+P  ++  +D SF  CAP ILEATMC
Sbjct: 9   ASTIRLALVFLVCI-VILAPSVTAHT---MAEAPSPLLVLLDQDSSFSNCAPFILEATMC 68

Query: 65  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           + D+IK P++ HP+CCKA   +NDC P   +HI    +++IKKIC L
Sbjct: 69  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKICGL 109

[Close]

BLAST of Tan0009235 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.2e-20
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 3   VKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMC 62
           +  SA KL LVFL+ IAI+    TMA TT   AAAP+P S+ ++  F +CAP ILEAT+C
Sbjct: 6   LNVSAMKLVLVFLVCIAILAPSTTMADTT---AAAPSP-SVPQNFPFLKCAPFILEATLC 65

Query: 63  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           V D+IKFPI+ HP+CCKA  K+NDC P   + I    +++IKKIC L
Sbjct: 66  VTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of Tan0009235 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 9   KLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMCVADIIK 68
           KL LVFL+ IAI+    TMA TT   AAAP+P S+ ++  F +CAP ILEAT+CV  +IK
Sbjct: 2   KLVLVFLVCIAILAPSTTMAGTT---AAAPSP-SVPQNFPFLKCAPFILEATLCVTGVIK 61

Query: 69  FPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           FPI+ HP+CCKA  K+ DC P+  + I  S +N+IKK C L
Sbjct: 62  FPIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of Tan0009235 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 5   ASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLI---EDISFKRCAPLILEATM 64
           AS  +LA+VFL+ I +IL+P   A+T   +A AP+P  ++   +D SF  CAP ILEATM
Sbjct: 9   ASTIRLAIVFLVCI-VILAPSVTART---MAEAPSPVLVLFDEDDSSFSNCAPFILEATM 68

Query: 65  CVADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           CV D+IK P++SHP+CCKA   +NDC P   +HI    +++IKKIC L
Sbjct: 69  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHI--PDMDVIKKICGL 110

[Close]

BLAST of Tan0009235 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 3   VKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLIEDISFKRCAPLILEATMC 62
           +KAS  K A VF++ IAI+ +  T  +T ++    P   S+ +++SF  CAP I + T+C
Sbjct: 6   LKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDP---SMSQNLSFFSCAPFIFDVTLC 65

Query: 63  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKIC 108
           + D+ KFPIS HP CCKA FK+NDC P   + I P+ +++IKKIC
Sbjct: 66  LVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

[Close]

BLAST of Tan0009235 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 5   ASATKLALVFLIFIAIILSPPTMAQTTAALAAAPTPSSLI--EDISFKRCAPLILEATMC 64
           AS  +LALVFL+ I +IL+P   A T   +A AP+P  ++  +D SF  CAP ILEATMC
Sbjct: 9   ASTIRLALVFLVCI-VILAPSVTAHT---MAEAPSPLLVLLDQDSSFSNCAPFILEATMC 68

Query: 65  VADIIKFPISSHPACCKAFFKINDCDPNFIKHISPSHLNLIKKICDL 110
           + D+IK P++ HP+CCKA   +NDC P   +HI    +++IKKIC L
Sbjct: 69  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKICGL 109

The following BLAST results are available for this feature:

BLAST of Tan0009235 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009235 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050069.1	1.7e-19	53.27	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	1.2e-17	53.47	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]
KAA0050072.1	6.7e-16	44.76	hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033...	[more]
KAE8653023.1	6.7e-16	43.93	hypothetical protein Csa_023561, partial [Cucumis sativus]	[more]
TYK10344.1	6.7e-16	49.53	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0009235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9A1	8.2e-20	53.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGK9	5.9e-18	53.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LTD6	5.0e-17	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
A0A5A7U2L3	3.2e-16	44.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGL7	3.2e-16	49.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0009235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 52..108 e-value: 5.2E-4 score: 20.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009235.1	Tan0009235.1	mRNA