Tan0009157 (gene) Snake gourd v1

Overview


Name	Tan0009157
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ALBINO3-like protein 2, chloroplastic
Location	LG01: 47819382 .. 47819828 (+)
RNA-Seq Expression	Tan0009157
Synteny	Tan0009157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTCAAAGCTCTGCACTCACCTTCGGCGTCTTCGTCCATCTCGTTTCTACTCCAGCGCTTCCCTTTCTTATCCTATGGCCTTTCAACTTCACGAATCTCACACACACCCAAGCTCTCATCATCACTCATTCGGCAGGCCAAATCATCGCTTTGATCCTCTTATAAGCTCCATTGGCGCTCTCACCGCCTTCTCCGCTCGGTCCTTGTGGACTCGTTCAGACGATGATTCAGAGTTCGAACGAATTGGCCATTTTGGTGTTGAATCAAGCCGCCTGTCGAACGACGGCACGGGAATCCAGCTGGGGCTTCAAGACTTGGAACTTGGAGGAGTTGTTGAGGAAGTGATTGGTGCGACTGCGGTGGAGGAGTCGATTCTGCCCATTCAGCAATTGGCTTCGATGCTGGATGGATTTCATCAGTATACTGGGATTCCCTGGTGA

mRNA sequence

ATGGCAACGTCAAAGCTCTGCACTCACCTTCGGCGTCTTCGTCCATCTCGTTTCTACTCCAGCGCTTCCCTTTCTTATCCTATGGCCTTTCAACTTCACGAATCTCACACACACCCAAGCTCTCATCATCACTCATTCGGCAGGCCAAATCATCGCTTTGATCCTCTTATAAGCTCCATTGGCGCTCTCACCGCCTTCTCCGCTCGGTCCTTGTGGACTCGTTCAGACGATGATTCAGAGTTCGAACGAATTGGCCATTTTGGTGTTGAATCAAGCCGCCTGTCGAACGACGGCACGGGAATCCAGCTGGGGCTTCAAGACTTGGAACTTGGAGGAGTTGTTGAGGAAGTGATTGGTGCGACTGCGGTGGAGGAGTCGATTCTGCCCATTCAGCAATTGGCTTCGATGCTGGATGGATTTCATCAGTATACTGGGATTCCCTGGTGA

Coding sequence (CDS)

ATGGCAACGTCAAAGCTCTGCACTCACCTTCGGCGTCTTCGTCCATCTCGTTTCTACTCCAGCGCTTCCCTTTCTTATCCTATGGCCTTTCAACTTCACGAATCTCACACACACCCAAGCTCTCATCATCACTCATTCGGCAGGCCAAATCATCGCTTTGATCCTCTTATAAGCTCCATTGGCGCTCTCACCGCCTTCTCCGCTCGGTCCTTGTGGACTCGTTCAGACGATGATTCAGAGTTCGAACGAATTGGCCATTTTGGTGTTGAATCAAGCCGCCTGTCGAACGACGGCACGGGAATCCAGCTGGGGCTTCAAGACTTGGAACTTGGAGGAGTTGTTGAGGAAGTGATTGGTGCGACTGCGGTGGAGGAGTCGATTCTGCCCATTCAGCAATTGGCTTCGATGCTGGATGGATTTCATCAGTATACTGGGATTCCCTGGTGA

Protein sequence

MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSIGALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGATAVEESILPIQQLASMLDGFHQYTGIPW

Homology

[Close]

BLAST of Tan0009157 vs. NCBI nr
Match: XP_038890165.1 (ALBINO3-like protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 121/148 (81.76%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MA S+LCTHLRRLRPSRFYSSASLSYPMAF+LHE+HT PS HH SF RP  RFDP + S 
Sbjct: 1   MAKSQLCTHLRRLRPSRFYSSASLSYPMAFRLHEAHTLPSPHHQSFSRPTRRFDPHLCST 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
            ALTAFS+RSLWTRSDD+SEFE+IGHFGVESSRLSND TGI  G+QDLELGGVVEEVIGA
Sbjct: 61  AALTAFSSRSLWTRSDDESEFEQIGHFGVESSRLSNDDTGIHSGIQDLELGGVVEEVIGA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
             VEESILPIQQL S+LDGFHQYTG+PW
Sbjct: 121 AVVEESILPIQQLTSILDGFHQYTGMPW 148

[Close]

BLAST of Tan0009157 vs. NCBI nr
Match: XP_022933145.1 (ALBINO3-like protein 2, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-57
Identity = 119/148 (80.41%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSRFYS ASLSYP+A +LHE+HT PSSHHHSF RP HRFD  I+SI
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+RI  F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVEESILP QQL S+LDGFHQYTG+PW
Sbjct: 121 TAVEESILPTQQLTSILDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. NCBI nr
Match: XP_022933144.1 (ALBINO3-like protein 2, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-57
Identity = 119/148 (80.41%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSRFYS ASLSYP+A +LHE+HT PSSHHHSF RP HRFD  I+SI
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+RI  F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVEESILP QQL S+LDGFHQYTG+PW
Sbjct: 121 TAVEESILPTQQLTSILDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. NCBI nr
Match: KAG6598966.1 (ALBINO3-like protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-57
Identity = 119/148 (80.41%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSRFYS ASLSYP+A +LHE+HT PSSHHHSF RP HRFD  I+SI
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+RI  F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVEESILP QQL S+LDGFHQYTG+PW
Sbjct: 121 TAVEESILPTQQLTSILDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. NCBI nr
Match: XP_023546235.1 (ALBINO3-like protein 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 6.2e-57
Identity = 118/148 (79.73%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSRFYS ASLSYP+A +LH++HT PSSHHHSF RP HRFD  ISSI
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHQAHTLPSSHHHSFTRPTHRFDHHISSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+RI  F   +SR+S+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLF---ASRVSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVEESILP QQL S+LDGFHQYTG+PW
Sbjct: 121 TAVEESILPTQQLTSILDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. ExPASy TrEMBL
Match: A0A6J1F440 (ALBINO3-like protein 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439944 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 119/148 (80.41%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSRFYS ASLSYP+A +LHE+HT PSSHHHSF RP HRFD  I+SI
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+RI  F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVEESILP QQL S+LDGFHQYTG+PW
Sbjct: 121 TAVEESILPTQQLTSILDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. ExPASy TrEMBL
Match: A0A6J1EYX9 (ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439944 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 119/148 (80.41%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSRFYS ASLSYP+A +LHE+HT PSSHHHSF RP HRFD  I+SI
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+RI  F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVEESILP QQL S+LDGFHQYTG+PW
Sbjct: 121 TAVEESILPTQQLTSILDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. ExPASy TrEMBL
Match: A0A6J1I9X8 (ALBINO3-like protein 2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472541 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSR YS ASLSYP+A +LHE+HT P+SHHHSF RP HRFD  ISSI
Sbjct: 1   MATSKLCTNLRRLRPSRVYSCASLSYPIASRLHEAHTLPTSHHHSFPRPTHRFDHHISSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+R   F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRTDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVE+SILP QQL SMLDGFHQYTG+PW
Sbjct: 121 TAVEDSILPTQQLTSMLDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. ExPASy TrEMBL
Match: A0A6J1ICK0 (ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472541 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCT+LRRLRPSR YS ASLSYP+A +LHE+HT P+SHHHSF RP HRFD  ISSI
Sbjct: 1   MATSKLCTNLRRLRPSRVYSCASLSYPIASRLHEAHTLPTSHHHSFPRPTHRFDHHISSI 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
           GALTAFS+RSLWTRSDDDSEF+R   F   +SRLS+D TGIQ G+QDLELGGVVEEVI A
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRTDLF---ASRLSDDDTGIQSGIQDLELGGVVEEVINA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVE+SILP QQL SMLDGFHQYTG+PW
Sbjct: 121 TAVEDSILPTQQLTSMLDGFHQYTGLPW 145

[Close]

BLAST of Tan0009157 vs. ExPASy TrEMBL
Match: A0A0A0LJT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094350 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 114/148 (77.03%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSSASLSYPMAFQLHESHTHPSSHHHSFGRPNHRFDPLISSI 60
           MATSKLCTHLRRLRPSRFYS +SLS P+ F+LHE+HT  SSHH  F  P+HRFDP ISS+
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISSLSSPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSL 60

Query: 61  GALTAFSARSLWTRSDDDSEFERIGHFGVESSRLSNDGTGIQLGLQDLELGGVVEEVIGA 120
            A TAFS+RS WTRS+DDSEF+RI H+GVESS LSND TGI    QDLELGGVVEEVIGA
Sbjct: 61  SAFTAFSSRSFWTRSNDDSEFDRIAHYGVESSHLSNDDTGI----QDLELGGVVEEVIGA 120

Query: 121 TAVEESILPIQQLASMLDGFHQYTGIPW 149
           TAVE SILPIQQL S+LDGFHQYTG+PW
Sbjct: 121 TAVENSILPIQQLTSILDGFHQYTGMPW 144

The following BLAST results are available for this feature:

BLAST of Tan0009157 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009157 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890165.1	2.4e-61	81.76	ALBINO3-like protein 2, chloroplastic [Benincasa hispida]	[more]
XP_022933145.1	2.8e-57	80.41	ALBINO3-like protein 2, chloroplastic isoform X2 [Cucurbita moschata]	[more]
XP_022933144.1	2.8e-57	80.41	ALBINO3-like protein 2, chloroplastic isoform X1 [Cucurbita moschata]	[more]
KAG6598966.1	2.8e-57	80.41	ALBINO3-like protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023546235.1	6.2e-57	79.73	ALBINO3-like protein 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0009157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F440	1.3e-57	80.41	ALBINO3-like protein 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1EYX9	1.3e-57	80.41	ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1I9X8	2.5e-56	79.05	ALBINO3-like protein 2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1ICK0	2.5e-56	79.05	ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0LJT6	1.3e-55	77.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094350 PE=3 SV=1	[more]

BLAST of Tan0009157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009157.1	Tan0009157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090150	establishment of protein localization to membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0032977	membrane insertase activity